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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5637#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1602 fasta sequence
[TTGTATTTCCAAAAGAAAATGAGCTTAAAATCTAACTCAAAGATGGATATATATTTTTAAAAGTGAACGAATTTAAAACCGACTCAAATATGGATGACGTATCAAAATACCAATAAAAACATCTTCGATTTTTATAATAGTAAAGATTTCATTCAATATGTTGATGTGACCATCAAGTATATGCATACAACCAAGCATGAGAAATATAAAATATTGCCAAAGAATACATCGGATAAATGGAGGATCTACAGGATATTAAAGTCCAATGAGTTTTGGAATCCAGTTCGGCCTCCGGAGACAGCACTGATTTCAAACGGACCTAGCGCCTTCATGCCAACTCCGATTTGGGTGATCTTGGACTTCGTGGAAAGCTTATCTCGCTACCTTTCAAATGCATCCAGTCTCACGTCCAAATTCATCTCGAGTCTACGGGAATCGCCAAAACAAGACAGTACTGTTGCTGAAACCGAACTTAGGCCTTAGACCTTGTAATAGACTAGGCCCATCTCGGAAGTGTCTCCCTCCACCTCCACGAATTAGCACTTAACCCTAGCTTTATTTTCCGCTATAAATAGCTTTGTACATTCTCAAAAACATTTGGGTTTTGTTTAGTTGAATTTTGCCAAGTGCCATTCACCTTGTCTCTAGTCCTCGCTCGATTAGTCGGCGACTATTGATTCAGAGCCCCCAATAGTTGGTGTGTTGATTTGCCGGGTCGATTAGATCTACCACTTCAATCGCAACTATTTCTTTGTGCTTAATCACCTATTCGCAATATTTAGATTGCATCTTATCTTGTTCTTGCAGTGTTCTCTCGTTTGCATTGCAGGAATCATCAACCGCGCGTCACGGTTGGTACGACATCGTTTGTGGTGTAGCGATTGCACGGCGTTCTGGACTTGTTCTGGTTGGTAGCCACGTCGCAAACGTCGCACTCGATCAAAGTGAGAGTTATCCCCTCACCAGAAGATCGGGCCACGAGAGAGAGCATCATCAGTTGGTATCAGAGCTTCAGTTGCCTGGTGAGGATTTTAGTTTTGTAATTTTTTCCCATCATCCACTATACAGCCGCACCACTTTTTCCTTTACCAAACATTAGTTTTGAGCCTTGTAATTTTCATTCAATTTTGCTTTATTGAGTTTTGGTCCGCTGTCGTGTCAGTGCTGGTTTTTGTTCTAGCTTCGTCTGGTTTGAGTTTTGCATCTTGGTTGCTCACTGCCTGTACGTTCGGTTGAAGGAGAAGAAAACATTAGATCTGATCTTTTTTTCATCCTCCTGTGTTAGTGCATGCATGCCGTGGAATTCTGGTACGTTACCAAGTAAATAGCGCGTGAAATTAGGAAGCTAATCGTGTTTCAATATATCCGAAGTGCATGTGCCAAAAAAATAGCAATTCCCAGTTTTTCTTCCTTTTGAGCTGCCACGCGCAAATAGAAAGTATATAAATCAAGATCGGTTCCCATATTCCTTGCGCCACAAAAATAGGAGGTATCCATCGTTTTCTCTTGTGACCGAGGTATGCATGCAACACAATCGTGCATATGTGCTTGAGTTAATTACTTGAAAAAGAAAAAAAGAGGAAGAAATACAAAAAAAAAAGG]
[+] EMBL AK063301 [TTGTATTTCCAAAAGAAAATGAGCTTAAAATCTAACTCAAAGATGGATATATATTTTTAAAAGTGAACGAATTTAAAACCGACTCAAATATGGATGACGTATCAAAATACCAATAAAAACATCTTCGATTTTTATAATAGTAAAGATTTCATTCAATATGTTGATGTGACCATCAAGTATATGCATACAACCAAGCATGAGAAATATAAAATATTGCCAAAGAATACATCGGATAAATGGAGGATCTACAGGATATTAAAGTCCAATGAGTTTTGGAATCCAGTTCGGCCTCCGGAGACAGCACTGATTTCAAACGGACCTAGCGCCTTCATGCCAACTCCGATTTGGGTGATCTTGGACTTCGTGGAAAGCTTATCTCGCTACCTTTCAAATGCATCCAGTCTCACGTCCAAATTCATCTCGAGTCTACGGGAATCGCCAAAACAAGACAGTACTGTTGCTGAAACCGAACTTAGGCCTTAGACCTTGTAATAGACTAGGCCCATCTCGGAAGTGTCTCCCTCCACCTCCACGAATTAGCACTTAACCCTAGCTTTATTTTCCGCTATAAATAGCTTTGTACATTCTCAAAAACATTTGGGTTTTGTTTAGTTGAATTTTGCCAAGTGCCATTCACCTTGTCTCTAGTCCTCGCTCGATTAGTCGGCGACTATTGATTCAGAGCCCCCAATAGTTGGTGTGTTGATTTGCCGGGTCGATTAGATCTACCACTTCAATCGCAACTATTTCTTTGTGCTTAATCACCTATTCGCAATATTTAGATTGCATCTTATCTTGTTCTTGCAGTGTTCTCTCGTTTGCATTGCAGGAATCATCAACCGCGCGTCACGGTTGGTACGACATCGTTTGTGGTGTAGCGATTGCACGGCGTTCTGGACTTGTTCTGGTTGGTAGCCACGTCGCAAACGTCGCACTCGATCAAAGTGAGAGTTATCCCCTCACCAGAAGATCGGGCCACGAGAGAGAGCATCATCAGTTGGTATCAGAGCTTCAGTTGCCTGGTGAGGATTTTAGTTTTGTAATTTTTTCCCATCATCCACTATACAGCCGCACCACTTTTTCCTTTACCAAACATTAGTTTTGAGCCTTGTAATTTTCATTCAATTTTGCTTTATTGAGTTTTGGTCCGCTGTCGTGTCAGTGCTGGTTTTTGTTCTAGCTTCGTCTGGTTTGAGTTTTGCATCTTGGTTGCTCACTGCCTGTACGTTCGGTTGAAGGAGAAGAAAACATTAGATCTGATCTTTTTTTCATCCTCCTGTGTTAGTGCATGCATGCCGTGGAATTCTGGTACGTTACCAAGTAAATAGCGCGTGAAATTAGGAAGCTAATCGTGTTTCAATATATCCGAAGTGCATGTGCCAAAAAAATAGCAATTCCCAGTTTTTCTTCCTTTTGAGCTGCCACGCGCAAATAGAAAGTATATAAATCAAGATCGGTTCCCATATTCCTTGCGCCACAAAAATAGGAGGTATCCATCGTTTTCTCTTGTGACCGAGGTATGCATGCAACACAATCGTGCATATGTGCTTGAGTTAATTACTTGAAAAAGAAAAAAAGAGGAAGAAATACAAAAAAAAAAGG]
[+] EMBL CF324533 [ GACCATCAAGTATATGCATACAACCAAGCATGAGAAATATAAAATATTGCCAAAGAATACATCGGATAAATGGAGGATCTACAGGATATTAAAGTCCAATGAGTTTTGGAATCCAGTTCGGCCTCCGGAGACAGCACTGATTTCAAACGGACCTAGCGCCTTCATGCCAACTCCGATTTGGGTGATCTTGGACTTCGTGGAAAGCTTATCTCGCTACCTTTCAAATGCATCCAGTCTCACGTCCAAATTCATCTCGAGTCTACGGGAATCGCCAAAACAAGACAGTACTGTTGCTGAAACCGAACTTAGGCCTTAGACCTTGTAATAGACTAGGCCCATCTCGGAAGTGTCTCCCTCCACCTCCACGAATTAGCACTTAACCCTAGCTTTATTTTCCGCTATAAATAGCTTTGTACATTCTCAAAAACATTTGGGTTTTGTTTAGTTGAATTTTGCCAAGTGCCATTCACCTTGTCTCTAGTCCTCGCTCGATTAGTCGGCGACTATTGATTCAGAGCCCCCAATAGTTGGTGTGTTGATTTGCCGGGTCGATTAGATCTACCACTTCAATCGCAA ]
consensusID : consensus_5637#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence
[TTTTCTTAAAAAAAATGTCGGGTCCCAAAACTAATGATTGAGAAACCGACATGTTTAACTATATCAAGCCCTGGATCAGTAGATTGATACAGCTTCAACAATCTGGATCTTCATTCCATACATTTGAACTAGGTTCCAAAGGTGATGACGACATCACTTTGTCGGATACGCTCATAACTTCACACGTTCCAATGATAATTCCAAGTCCAAGTCCAGTTCGGCCTCCGGAGACAGCACTGACTTTAAACGGACCTAGCGCCTTCATGCCAACTCCGATTTGGGTGATCTTGGAGTTCGTAGAAAGCTTATCTCGCTACCTTTCAAATGCATCCGGTCTCATGTCCAAATTCATCTCGAGTCAACGGGAATCG]
[+] EMBL CF310920 [TTTTCTTAAAAAAAATGTCGGGTCCCAAAACTAATGATTGAGAAACCGACATGTTTAACTATATCAAGCCCTGGATCAGTAGATTGATACAGCTTCAACAATCTGGATCTTCATTCCATACATTTGAACTAGGTTCCAAAGGTGATGACGACATCACTTTGTCGGATACGCTCATAACTTCACACGTTCCAATGATAATTCCAAGTCCAAGTCCAGTTCGGCCTCCGGAGACAGCACTGACTTTAAACGGACCTAGCGCCTTCATGCCAACTCCGATTTGGGTGATCTTGGAGTTCGTAGAAAGCTTATCTCGCTACCTTTCAAATGCATCCGGTCTCATGTCCAAATTCATCTCGAGTCAACGGGAATCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5637#0 TTGTATTTCCAAAAGAAAATGAGCTTAAAATCTAACTCAAAGATGGATATATATTTTTAA 60
consensus_5637#1 ------------------------------------------------TTTTCTTAAAAA 12
* * ** **
consensus_5637#0 AAGTGAACGAATTTAAAACCGACTCAAATATGGATGACGTATCAAAATACCAATAAAAAC 120
consensus_5637#1 AAATGTCGGGTCCCAAAACTAATGATTGAGAAACCGACATGTTTAACTAT--ATCAAG-- 68
** ** * ***** * *** * * ** ** ** **
consensus_5637#0 ATCTTCGATTTTTATAATAGTAAAGATTTCATTCAATATGTTGATGTGACCATCAAGTAT 180
consensus_5637#1 -CCCTGGATCAGTAGATTGATACAGCTTCAA--CAATCTG--GATCT--TCATTCCATAC 121
* * *** ** * * ** ** ** * **** ** *** * *** **
consensus_5637#0 ATGCATACAACCAAGCATGAGAAATATAAAATATTGCCAAAGAATACATCGGATAAATGG 240
consensus_5637#1 AT---TTGAACTAGGTTCCAAAGGTG----ATGACGACATC-ACTTTGTCGGATACGCTC 173
** * *** * * * * * ** * ** * * *******
consensus_5637#0 AGGATCTACAGGATATTAAAGTCCAATGAGTTTTGGAATCCAGTTCGGCCTCCGGAGACA 300
consensus_5637#1 ATAACTTCACACGTTCCAATGATAATTCCAAGTCCAAGTCCAGTTCGGCCTCCGGAGACA 233
* * * * ** * * * * * **********************
consensus_5637#0 GCACTGATTTCAAACGGACCTAGCGCCTTCATGCCAACTCCGATTTGGGTGATCTTGGAC 360
consensus_5637#1 GCACTGACTTTAAACGGACCTAGCGCCTTCATGCCAACTCCGATTTGGGTGATCTTGGAG 293
******* ** ************************************************
consensus_5637#0 TTCGTGGAAAGCTTATCTCGCTACCTTTCAAATGCATCCAGTCTCACGTCCAAATTCATC 420
consensus_5637#1 TTCGTAGAAAGCTTATCTCGCTACCTTTCAAATGCATCCGGTCTCATGTCCAAATTCATC 353
***** ********************************* ****** *************
consensus_5637#0 TCGAGTCTACGGGAATCGCCAAAACAAGACAGTACTGTTGCTGAAACCGAACTTAGGCCT 480
consensus_5637#1 TCGAGTCAACGGGAATCG------------------------------------------ 371
******* **********
consensus_5637#0 TAGACCTTGTAATAGACTAGGCCCATCTCGGAAGTGTCTCCCTCCACCTCCACGAATTAG 540
consensus_5637#1 ------------------------------------------------------------
consensus_5637#0 CACTTAACCCTAGCTTTATTTTCCGCTATAAATAGCTTTGTACATTCTCAAAAACATTTG 600
consensus_5637#1 ------------------------------------------------------------
consensus_5637#0 GGTTTTGTTTAGTTGAATTTTGCCAAGTGCCATTCACCTTGTCTCTAGTCCTCGCTCGAT 660
consensus_5637#1 ------------------------------------------------------------
consensus_5637#0 TAGTCGGCGACTATTGATTCAGAGCCCCCAATAGTTGGTGTGTTGATTTGCCGGGTCGAT 720
consensus_5637#1 ------------------------------------------------------------
consensus_5637#0 TAGATCTACCACTTCAATCGCAACTATTTCTTTGTGCTTAATCACCTATTCGCAATATTT 780
consensus_5637#1 ------------------------------------------------------------
consensus_5637#0 AGATTGCATCTTATCTTGTTCTTGCAGTGTTCTCTCGTTTGCATTGCAGGAATCATCAAC 840
consensus_5637#1 ------------------------------------------------------------
consensus_5637#0 CGCGCGTCACGGTTGGTACGACATCGTTTGTGGTGTAGCGATTGCACGGCGTTCTGGACT 900
consensus_5637#1 ------------------------------------------------------------
consensus_5637#0 TGTTCTGGTTGGTAGCCACGTCGCAAACGTCGCACTCGATCAAAGTGAGAGTTATCCCCT 960
consensus_5637#1 ------------------------------------------------------------
consensus_5637#0 CACCAGAAGATCGGGCCACGAGAGAGAGCATCATCAGTTGGTATCAGAGCTTCAGTTGCC 1020
consensus_5637#1 ------------------------------------------------------------
consensus_5637#0 TGGTGAGGATTTTAGTTTTGTAATTTTTTCCCATCATCCACTATACAGCCGCACCACTTT 1080
consensus_5637#1 ------------------------------------------------------------
consensus_5637#0 TTCCTTTACCAAACATTAGTTTTGAGCCTTGTAATTTTCATTCAATTTTGCTTTATTGAG 1140
consensus_5637#1 ------------------------------------------------------------
consensus_5637#0 TTTTGGTCCGCTGTCGTGTCAGTGCTGGTTTTTGTTCTAGCTTCGTCTGGTTTGAGTTTT 1200
consensus_5637#1 ------------------------------------------------------------
consensus_5637#0 GCATCTTGGTTGCTCACTGCCTGTACGTTCGGTTGAAGGAGAAGAAAACATTAGATCTGA 1260
consensus_5637#1 ------------------------------------------------------------
consensus_5637#0 TCTTTTTTTCATCCTCCTGTGTTAGTGCATGCATGCCGTGGAATTCTGGTACGTTACCAA 1320
consensus_5637#1 ------------------------------------------------------------
consensus_5637#0 GTAAATAGCGCGTGAAATTAGGAAGCTAATCGTGTTTCAATATATCCGAAGTGCATGTGC 1380
consensus_5637#1 ------------------------------------------------------------
consensus_5637#0 CAAAAAAATAGCAATTCCCAGTTTTTCTTCCTTTTGAGCTGCCACGCGCAAATAGAAAGT 1440
consensus_5637#1 ------------------------------------------------------------
consensus_5637#0 ATATAAATCAAGATCGGTTCCCATATTCCTTGCGCCACAAAAATAGGAGGTATCCATCGT 1500
consensus_5637#1 ------------------------------------------------------------
consensus_5637#0 TTTCTCTTGTGACCGAGGTATGCATGCAACACAATCGTGCATATGTGCTTGAGTTAATTA 1560
consensus_5637#1 ------------------------------------------------------------
consensus_5637#0 CTTGAAAAAGAAAAAAAGAGGAAGAAATACAAAAAAAAAAGG 1602
consensus_5637#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||