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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1766 fasta sequence
[TTCTCTCCCCGCCAGCTCATGCCTCGCCTCCGTGCGCCGCGCTCCTCGCCCTCGCTCTCGCTCGTGCAGTGACATGTCACGCGCCGCCGCCTTCACCTCCTCCAACGGTCCATTGACGATGAAGACGGAAAGAGAGAGGGCGAGAGCTAGAGGGGATGGGGAGAGGAAGGCACGCAGCGAGTTCCCCTCCTTCCTTCGTAGCAATTGGTGCTTCCACCAGCAAGCTTTCTATAACGTGGAGTGTCGCCGACCACGGCCGCAGCCTCCTTCCTCTGGATTGGACTCCACTGGGAACTCCTCCGACATATCAAGTGTGCCTGTCCACCTTCTACCTCTGAGGCAAAGATTGGATCAAGCAAGCTGGATCTGACTCAGCACCTTGATCTGCTCAACAACCGGAGCCCCCACCTCCTTATACATCCCAAAGATGGATATGCATCTTCTGTATTCAGTTAGGATAAGGCTTCCAAGGTCTGCATAAAGCAACCGTGAGACTCACATGCTACAAAATTTTGGTTTCACATGATGTTTATGACTGAAAGTAATGCAGTATCAGGCATGCAAAAATAGAAGTTTAGTTGATCTACTGGTGCTTCATCTGCAAACACCATGGATCAGTTCATGACAGCATGACCATAAGGTTGGGAGGGACAAGAACAAGGTGTCCATTAAAGTTATGGAGATAATGCTGTTCAGGCCGGTCCAGTGAAAAGAGATTAAAGAGGATTAAATTGTTTGCAGCGATGGATCGAAGTTGGATGTATAGAAGAACTGTGCGACGTCATAGCAAATAGTATAGAAATTGAGTATTAAATTTTATAAACACCGCGGAGGAGGATAGGAAAAGAAGAAACAAGATTACATATGTTGTCAATGTGCATATTGCAAAAATGAGATATGTTTGATAGCAGAGTGGACGTACATGCTCATCTGATACAACGAGGATTCATGGAGGGCTACACATGTTGGGTGAAGCATGGAGAGCAAGAATCACTTGACGATGTTGCAGCTGCAGACAGAAGTGGAGCACAAAATTAGGAAAATGAAGATGAGCATAATATGTTTGTACCTTCTCCATTAGGCGGTGAAATGGTTGATGTGGATCACGATCTGATGCAAGACATATTACATGACGTTGAGGACACAGCTTACAACGAGAGAGATTCCATAAAATTCAGCAGGTTGGTCGGTGACTCGGAGACGCCTCTATACGCCGGATGCAAGGCAAAACACACCAAATTGTCAGATACCTTGAACCTAACGAAGCTGAAGGCAAGTAGTGGATGGACATAAAAGAGTTTCATAGATCTTTGGGGAATACTGAAAGCAATGCTATTTGATATATTGTTTACATATCTTGCTAGTTACATGATCAAACTGATTGGCACACATGCATCTCATCAATTTTTGGACCTGCACTGGAGCTAAGCAGATCTCCTAGGTCATTGCTGTTGTCGACTTAGTTCGCACCAACAAAGTTCTGGCACCATAGGCCAAGCGCATATTTTTCATCAACACCGTGCACTTGCGGACTTATTTGTAGCCATCACAAATAACAACAGGGAGAGGGGGCGGTGATGATAAGTTACCCGAGGGTGACCCGGCAGGGCCCTGGGGTGTGAGTTGTCTTTCTAAAATAAGAGTGTCTAATTCTATATATATCTATATATCCTATCAATAGCATTGGATCCTCTCATGCTCAATAAATTCATGTCTTATGTACAATTGCAATTCCAAATCAAATACTATGAAGCTTAAAATGTTGT]
[+] EMBL AK065382 [TTCTCTCCCCGCCAGCTCATGCCTCGCCTCCGTGCGCCGCGCTCCTCGCCCTCGCTCTCGCTCGTGCAGTGACATGTCACGCGCCGCCGCCTTCACCTCCTCCAACGGTCCATTGACGATGAAGACGGAAAGAGAGAGGGCGAGAGCTAGAGGGGATGGGGAGAGGAAGGCACGCAGCGAGTTCCCCTCCTTCCTTCGTAGCAATTGGTGCTTCCACCAGCAAGCTTTCTATAACGTGGAGTGTCGCCGACCACGGCCGCAGCCTCCTTCCTCTGGATTGGACTCCACTGGGAACTCCTCCGACATATCAAGTGTGCCTGTCCACCTTCTACCTCTGAGGCAAAGATTGGATCAAGCAAGCTGGATCTGACTCAGCACCTTGATCTGCTCAACAACCGGAGCCCCCACCTCCTTATACATCCCAAAGATGGATATGCATCTTCTGTATTCAGTTAGGATAAGGCTTCCAAGGTCTGCATAAAGCAACCGTGAGACTCACATGCTACAAAATTTTGGTTTCACATGATGTTTATGACTGAAAGTAATGCAGTATCAGGCATGCAAAAATAGAAGTTTAGTTGATCTACTGGTGCTTCATCTGCAAACACCATGGATCAGTTCATGACAGCATGACCATAAGGTTGGGAGGGACAAGAACAAGGTGTCCATTAAAGTTATGGAGATAATGCTGTTCAGGCCGGTCCAGTGAAAAGAGATTAAAGAGGATTAAATTGTTTGCAGCGATGGATCGAAGTTGGATGTATAGAAGAACTGTGCGACGTCATAGCAAATAGTATAGAAATTGAGTATTAAATTTTATAAACACCGCGGAGGAGGATAGGAAAAGAAGAAACAAGATTACATATGTTGTCAATGTGCATATTGCAAAAATGAGATATGTTTGATAGCAGAGTGGACGTACATGCTCATCTGATACAACGAGGATTCATGGAGGGCTACACATGTTGGGTGAAGCATGGAGAGCAAGAATCACTTGACGATGTTGCAGCTGCAGACAGAAGTGGAGCACAAAATTAGGAAAATGAAGATGAGCATAATATGTTTGTACCTTCTCCATTAGGCGGTGAAATGGTTGATGTGGATCACGATCTGATGCAAGACATATTACATGACGTTGAGGACACAGCTTACAACGAGAGAGATTCCATAAAATTCAGCAGGTTGGTCGGTGACTCGGAGACGCCTCTATACGCCGGATGCAAGGCAAAACACACCAAATTGTCAGATACCTTGAACCTAACGAAGCTGAAGGCAAGTAGTGGATGGACATAAAAGAGTTTCATAGATCTTTGGGGAATACTGAAAGCAATGCTATTTGATATATTGTTTACATATCTTGCTAGTTACATGATCAAACTGATTGGCACACATGCATCTCATCAATTTTTGGACCTGCACTGGAGCTAAGCAGATCTCCTAGGTCATTGCTGTTGTCGACTTAGTTCGCACCAACAAAGTTCTGGCACCATAGGCCAAGCGCATATTTTTCATCAACACCGTGCACTTGCGGACTTATTTGTAGCCATCACAAATAACAACAGGGAGAGGGGGCGGTGATGATAAGTTACCCGAGGGTGACCCGGCAGGGCCCTGGGGTGTGAGTTGTCTTTCTAAAATAAGAGTGTCTAATTCTATATATATCTATATATCCTATCAATAGCATTGGATCCTCTCATGCTCAATAAATTCATGTCTTATGTACAATTGCAATTCCAAATCAAATACTATGAAGCTTAAAATGTTGT]
consensusID : consensus_5639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 835 fasta sequence
[GCATGTACCAGAGCCGACGGATGGTTTGTTGGATCATTGATCAGTAGAGGAATGCATATCCTGTGTTACAAACATACAAATGTAGACTTGTTGGATCCAGCCTTTCTTATTTGCTTATGATTTTACCTCAATATCCTACAATGCTGGGTTTTTTTGGCTAGCCACTGAAGACCTCAAGGCTAATAACATTCAGAACCTTGCTAAATGTCAGAGAAGGCCTCTTAGAAGGTTCGAGTCACCACTGACGAAACCGATGATATGAAGGCTCATATGCCATCAATTGATCGAAGTTGGATGTATGCGAAAAATTTGAAACGCCGTTCTACGGAGTACAGAAAGGGCGTAATAAATTTTATGAACGCCGCGGAGGAGGATCGGATAAGAAGAAACAGTGATTACATGTGTTGTCCATGTGCAGATTGCAAGAATGAGAATATGTTTGATAGCGGAGAGGACGTACACGGTCATCTGATATAACGAGGATTCATGGAGGGCTATACATGTTGGGTGAAGCATGGAGAGCAAGAATCAGGAAGTGGAGCAGCAGCAGACAGAAGTGGTGCGCATAATCAGGAAGATGAAGATGAGCATGACATGTTTATACCTTCTCCATTGGGCGGTGAAATAGTTGATGTGGATCACGATCTGCTGCAAGACATGTTACGTGACATTCAGGACCCAGCCCAGAATGAGAGAGATGGAATGAAGTTCAGCAGGTTGGTAAGTGATTACAAGACGCCTTTGTACGCTGGATGCAAAGCAAAACACACTAAGTTGTCAGTTACCTTGGACCGAATGAAGCTGAAGGCAAGTAGTGGATGGACAAAAAAAAAGG]
[-] EMBL CB634122 [GCATGTACCAGAGCCGACGGATGGTTTGTTGGATCATTGATCAGTAGAGGAATGCATATCCTGTGTTACAAACATACAAATGTAGACTTGTTGGATCCAGCCTTTCTTATTTGCTTATGATTTTACCTCAATATCCTACAATGCTGGGTTTTTTTGGCTAGCCACTGAAGACCTCAAGGCTAATAACATTCAGAACCTTGCTAAATGTCAGAGAAGGCCTCTTAGAAGGTTCGAGTCACCACTGACGAAACCGATGATATGAAGGCTCATATGCCATCAATTGATCGAAGTTGGATGTATGCGAAAAATTTGAAACGCCGTTCTACGGAGTACAGAAAGGGCGTAATAAATTTTATGAACGCCGCGGAGGAGGATCGGATAAGAAGAAACAGTGATTACATGTGTTGTCCATGTGCAGATTGCAAGAATGAGAATATGTTTGATAGCGGAGAGGACGTACACGGTCATCTGATATAACGAGGATTCATGGAGGGCTATACATGTTGGGTGAAGCATGGAGAGCAAGAATCAGGAAGTGGAGCAGCAGCAGACAGAAGTGGTGCGCATAATCAGGAAGATGAAGATGAGCATGACATGTTTATACCTTCTCCATTGGGCGGTGAAATAGTTGATGTGGATCACGATCTGCTGCAAGACATGTTACGTGACATTCAGGACCCAGCCCAGAATGAGAGAGATGGAATGAAGTTCAGCAGGTTGGTAAGTGATTACAAGACGCCTTTGTACGCTGGATGCAAAGCAAAACACACTAAGTTGTCAGTTACCTTGGACCGAATGAAGCTGAAGGCAAGTAGTGGATGGACAAAAAAAAAGG]
[-] EMBL CB626639 [ AGTAGAGGAATGCATATCCTGTGTTACAAACATACAAATGTAGACTTGTTGGATCCAGCCTTTCTTATTTGCTTATGATTTTACCTCAATATCCTACAATGCTGGGTTTTTTTGGCTAGCCACTGAAGACTTCAAGGCTAATAACATTCAGAACCTTGCTAAATGTCAGAGAAGGCCTCTTAGAAGGTTCGAGTCACCACTGACGAAACCGATGATATGAAGGCTCATATGCCATCAATTGATCGAAGTTGGATGTATGCGAAAAATTTGAAACGCCGTTCTACGGAGTACAGAAAGGGCGTAATAAATTTTATGAACGCCGCGGAGGAGGATCGGATAAGAAGAAACAGTGATTACATGTGTTGTCCATGTGCAGATTGCAAGAATGAGAATATGTTTGATAGCGGAGAGGACGTACACGGTCATCTGATATAACGAGGATTCATGGAGGGCTATACATGTTGGGTGAAGCATGGAGAGCAAGAATCAGGAAGTGGAGCAGCAGCAGACAGAAGTGGTGCGCATAATCAGGAAGATGAAGATGAGCATGACATGTTTATACCTTCTCCATTGGGCGGTGAAATAGTTGATGTGGATCACGATCTGCTGCAAGACATGTTACGTGACATTCAGGACCCAGCCCAGAATGAGAGAGATGGAATGAAGTTCAGCAGGTTGGTAAGTGATTACAAGACGCCTTTGTACGCTGGATGCAAAGCAAAACACACTAAGTTGTCAGTTACCTAGGGCCTAATGAAGCTGAAGGCAAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5639#0 TTCTCTCCCCGCCAGCTCATGCCTCGCCTCCGTGCGCCGCGCTCCTCGCCCTCGCTCTCG 60
consensus_5639#1 ------------------------------------------------------------
consensus_5639#0 CTCGTGCAGTGACATGTCACGCGCCGCCGCCTTCACCTCCTCCAACGGTCCATTGACGAT 120
consensus_5639#1 ------------------------------------------------------------
consensus_5639#0 GAAGACGGAAAGAGAGAGGGCGAGAGCTAGAGGGGATGGGGAGAGGAAGGCACGCAGCGA 180
consensus_5639#1 ------------------------------------------------------------
consensus_5639#0 GTTCCCCTCCTTCCTTCGTAGCAATTGGTGCTTCCACCAGCAAGCTTTCTATAACGTGGA 240
consensus_5639#1 ------------------------------------------------------------
consensus_5639#0 GTGTCGCCGACCACGGCCGCAGCCTCCTTCCTCTGGATTGGACTCCACTGGGAACTCCTC 300
consensus_5639#1 ------------------------------------------------------------
consensus_5639#0 CGACATATCAAGTGTGCCTGTCCACCTTCTACCTCTGAGGCAAAGATTGGATCAAGCAAG 360
consensus_5639#1 ------------------------------------------------------------
consensus_5639#0 CTGGATCTGACTCAGCACCTTGATCTGCTCAACAACCGGAGCCCCCACCTCCTTATACAT 420
consensus_5639#1 ------------------------------------------------------GCATGT 6
* *
consensus_5639#0 CCCAAAGATGGATATGCATCTTCTGTAT--TCAGTTAGGATAAGGCTTCCAAGGTCTGCA 478
consensus_5639#1 ACCAGAGCCGACGGATGGTTTGTTGGATCATTGATCAGTA-GAGGAATGCATATCCTGTG 65
*** ** * * * ** ** * * ** * *** * ** ***
consensus_5639#0 TAAAGCAACCGTGAGACTCACATGCTACAAAATTTTGGTTTCACATGATGTTTATGACTG 538
consensus_5639#1 TTA--CAAACATACAAATGTAGACTTGTTGGATCCAGCCTTTCTTATTTGCTTATGATTT 123
* * *** * * * * * ** * ** ** ****** *
consensus_5639#0 AAAGTAATGCAGTATCAGGCATGCAAAAATAGAAGTTTAGTTGATCTACTGGTGCTTCAT 598
consensus_5639#1 ----TACCTCAATAT----CCTACAATGCTGG--GTTTTTTTGGCTAGCCA--------- 164
** ** *** * * *** * * **** *** *
consensus_5639#0 CTGCAAACACCATGGATCAGTTCATGACAGCATGACCATAAGGTTGGGAGGGACAAGAAC 658
consensus_5639#1 CTGAAGACCTCAAGGCT--------AATAACAT--TCAGAACCTTGCTAAATGTCAGAG- 213
*** * ** ** ** * * * *** ** ** *** * ***
consensus_5639#0 AAGGTGTCCATTAAAGTTATGGAGATAATGCTGTTCAGGCCGGTCCAGTGAAAAGAGATT 718
consensus_5639#1 AAGGCCTCTTAGAAGGTT--CGAGTCACCACTGACGAAACCGAT----------GATAT- 260
**** ** ** *** *** * *** * *** * ** **
consensus_5639#0 AAAGAGGATTAAATTGTTTGCAGCGATGGATCGAAGTTGGATGTATAGAAGAACTGTGCG 778
consensus_5639#1 ---GAAGGCTCATATGC---CATCAATTGATCGAAGTTGGATGTATGCGAAAAATTTGAA 314
** * * * ** ** * ** ****************** * ** * **
consensus_5639#0 ACGTCATAGCAAATAGTATAGAAATTGAGTATTAAATTTTATAAACACCGCGGAGGAGGA 838
consensus_5639#1 ACGCCGTTCTACGGAGTACAGAAAGGGCGTAATAAATTTTATGAACGCCGCGGAGGAGGA 374
*** * * * **** ***** * *** ********** *** *************
consensus_5639#0 TAGGAAAAGAAGAAACAA-GATTACATATGTTGTCAATGTGCATATTGCAAAAATGAGA- 896
consensus_5639#1 TCGGATAAGAAGAAACAGTGATTACATGTGTTGTCCATGTGCAGATTGCAAGAATGAGAA 434
* *** *********** ******** ******* ******* ******* *******
consensus_5639#0 TATGTTTGATAGCAGAGTGGACGTACATGCTCATCTGATACAACGAGGATTCATGGAGGG 956
consensus_5639#1 TATGTTTGATAGCGGAGAGGACGTACACGGTCATCTGATATAACGAGGATTCATGGAGGG 494
************* *** ********* * ********** *******************
consensus_5639#0 CTACACATGTTGGGTGAAGCATGGAGAGCAAGAATCACTTGACGATGTTGCAGCTGCAGA 1016
consensus_5639#1 CTATACATGTTGGGTGAAGCATGGAGAGCAAGAATCA---GGAAGTGGAGCAGCAGCAGA 551
*** ********************************* * ** ***** *****
consensus_5639#0 CAGAAGTGGAGCACAAAATTAGGAAAATGAAGATGAGCATAATATGTTTGTACCTTCTCC 1076
consensus_5639#1 CAGAAGTGGTGCGCATAATCAGGAAGATGAAGATGAGCATGACATGTTTATACCTTCTCC 611
********* ** ** *** ***** ************** * ****** **********
consensus_5639#0 ATTAGGCGGTGAAATGGTTGATGTGGATCACGATCTGATGCAAGACATATTACATGACGT 1136
consensus_5639#1 ATTGGGCGGTGAAATAGTTGATGTGGATCACGATCTGCTGCAAGACATGTTACGTGACAT 671
*** *********** ********************* ********** **** **** *
consensus_5639#0 TGAGGACACAGCTTACAACGAGAGAGATTCCATAAAATTCAGCAGGTTGGTCGGTGACTC 1196
consensus_5639#1 TCAGGACCCAGCCCAGAATGAGAGAGATGGAATGAAGTTCAGCAGGTTGGTAAGTGATTA 731
* ***** **** * ** ********* ** ** ************** **** *
consensus_5639#0 GGAGACGCCTCTATACGCCGGATGCAAGGCAAAACACACCAAATTGTCAGATACCTTGAA 1256
consensus_5639#1 CAAGACGCCTTTGTACGCTGGATGCAAAGCAAAACACACTAAGTTGTCAGTTACCTTGGA 791
******** * ***** ******** *********** ** ******* ******* *
consensus_5639#0 CCTAACGAAGCTGAAGGCAAGTAGTGGATGGACATAAAAGAGTTTCATAGATCTTTGGGG 1316
consensus_5639#1 CCGAATGAAGCTGAAGGCAAGTAGTGGATGGACAAAAAAAAAGG---------------- 835
** ** **************************** **** *
consensus_5639#0 AATACTGAAAGCAATGCTATTTGATATATTGTTTACATATCTTGCTAGTTACATGATCAA 1376
consensus_5639#1 ------------------------------------------------------------
consensus_5639#0 ACTGATTGGCACACATGCATCTCATCAATTTTTGGACCTGCACTGGAGCTAAGCAGATCT 1436
consensus_5639#1 ------------------------------------------------------------
consensus_5639#0 CCTAGGTCATTGCTGTTGTCGACTTAGTTCGCACCAACAAAGTTCTGGCACCATAGGCCA 1496
consensus_5639#1 ------------------------------------------------------------
consensus_5639#0 AGCGCATATTTTTCATCAACACCGTGCACTTGCGGACTTATTTGTAGCCATCACAAATAA 1556
consensus_5639#1 ------------------------------------------------------------
consensus_5639#0 CAACAGGGAGAGGGGGCGGTGATGATAAGTTACCCGAGGGTGACCCGGCAGGGCCCTGGG 1616
consensus_5639#1 ------------------------------------------------------------
consensus_5639#0 GTGTGAGTTGTCTTTCTAAAATAAGAGTGTCTAATTCTATATATATCTATATATCCTATC 1676
consensus_5639#1 ------------------------------------------------------------
consensus_5639#0 AATAGCATTGGATCCTCTCATGCTCAATAAATTCATGTCTTATGTACAATTGCAATTCCA 1736
consensus_5639#1 ------------------------------------------------------------
consensus_5639#0 AATCAAATACTATGAAGCTTAAAATGTTGT 1766
consensus_5639#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||