cluster # 5643

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Oryza sativa
cluster # 5643 cluster # 5643 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5643#0 length = 588 sequences # 1

consensus_5643#1 length = 545 sequences # 1
consensus_5643#2 length = 402 sequences # 1

consensusID : consensus_5643#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 588
fasta sequence

                              [TGGCGGCGGAGATTGACCTCGTCCTCGCACGCCGGAGTCGCCGAGTTCATCCTGCCGCAGCCCTCGCGCGGGTGCTCGGGTGGGGGAAGCCTCTAAACCGTACGGCGTCGTGTGACTCGTGTCCGCGAGGGCCGCCGTACCAGATGCTGCTCAAGTAGCCCGGCGTGCATCTCGTTAGAGGTCTCTACGAAGGGGAGGAAATGAAGGGCTTCCAGCAGATCAGCTCGCGGGGAGGTTCAGAGACCCGACCACACCACATTGGTCATCCCTAAGAAAGCGTGGAGGCGTGGAGCTACTAGATTTCCTGATGTATTGGAGTACCTTGACGAAGCATGGGCTGGAAAGTTGTTTTTGGTGGTGATCACCCGGAGCAGATCTTGCGTCATGGACCTACTTAGCAGCTGAACAGTTTGGCTGGTCTTGCATTGTGCCTGTCAGATTAGTGCTGTACTTGATGCACTGTAGTCGTTTATGCATGAAATGAAATACAGAACCATATGCAGATTGCAGAACAAATTACTTTCCTTCTAAATAGGGTGAGATATGCTAGGTAAACCTTATTACTTTGTGGTGCTGTTTGACAATGTA]

[+] EMBL CA752632             [TGGCGGCGGAGATTGACCTCGTCCTCGCACGCCGGAGTCGCCGAGTTCATCCTGCCGCAGCCCTCGCGCGGGTGCTCGGGTGGGGGAAGCCTCTAAACCGTACGGCGTCGTGTGACTCGTGTCCGCGAGGGCCGCCGTACCAGATGCTGCTCAAGTAGCCCGGCGTGCATCTCGTTAGAGGTCTCTACGAAGGGGAGGAAATGAAGGGCTTCCAGCAGATCAGCTCGCGGGGAGGTTCAGAGACCCGACCACACCACATTGGTCATCCCTAAGAAAGCGTGGAGGCGTGGAGCTACTAGATTTCCTGATGTATTGGAGTACCTTGACGAAGCATGGGCTGGAAAGTTGTTTTTGGTGGTGATCACCCGGAGCAGATCTTGCGTCATGGACCTACTTAGCAGCTGAACAGTTTGGCTGGTCTTGCATTGTGCCTGTCAGATTAGTGCTGTACTTGATGCACTGTAGTCGTTTATGCATGAAATGAAATACAGAACCATATGCAGATTGCAGAACAAATTACTTTCCTTCTAAATAGGGTGAGATATGCTAGGTAAACCTTATTACTTTGTGGTGCTGTTTGACAATGTA]




>consensus_5643#0
TGGCGGCGGAGATTGACCTCGTCCTCGCACGCCGGAGTCGCCGAGTTCATCCTGCCGCAG
CCCTCGCGCGGGTGCTCGGGTGGGGGAAGCCTCTAAACCGTACGGCGTCGTGTGACTCGT
GTCCGCGAGGGCCGCCGTACCAGATGCTGCTCAAGTAGCCCGGCGTGCATCTCGTTAGAG
GTCTCTACGAAGGGGAGGAAATGAAGGGCTTCCAGCAGATCAGCTCGCGGGGAGGTTCAG
AGACCCGACCACACCACATTGGTCATCCCTAAGAAAGCGTGGAGGCGTGGAGCTACTAGA
TTTCCTGATGTATTGGAGTACCTTGACGAAGCATGGGCTGGAAAGTTGTTTTTGGTGGTG
ATCACCCGGAGCAGATCTTGCGTCATGGACCTACTTAGCAGCTGAACAGTTTGGCTGGTC
TTGCATTGTGCCTGTCAGATTAGTGCTGTACTTGATGCACTGTAGTCGTTTATGCATGAA
ATGAAATACAGAACCATATGCAGATTGCAGAACAAATTACTTTCCTTCTAAATAGGGTGA
GATATGCTAGGTAAACCTTATTACTTTGTGGTGCTGTTTGACAATGTA

consensusID : consensus_5643#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence

                              [GTCGGGGGGTCGGCCGCCCCGGACGGCGCCGCCGCCCACCGCCGATCGCCGTTGGTAGTGGTATGGTGTGGCAGCAGCGGCGGAGATTGGCCTCGTCCTCGCACGCCGGAGTCGCCGAGTTCATCCTGCCGCGGCCCGCGGGCCCTCGCTCGGGTGCTCGGGTCGGGGGAATCCTCTAAACCGTACGGCGTCGTGTCCGCGAGGGCCGCCGTACCAGATGCTGCTCAAGTAGCCCGGCGTGCATCTCGTTAGAGATCTATACGAAGGGGAGGACATGAACAGCTTCCAGCAGAGGCTCGCGGGGAGGTTCAGAGATCCGACCACACCACATTGGTCATCCCTAAGAAAGCGTGGAGGCGTCGAGCTACTAGATTTTCTGATAATGGCAATTTTATTAGGTTCTTAATTTCTCCGTGTTTCGAGTTCATACATGGAAATGCAAACCATTTTTTTGATGCATTGATAGGGAACAAGAAGTCGATATAATGTCGTCATGCTAACTCCTGGAATCAAAACCAAATGGTGAAATGGAGAATCATAGTCGT]

[+] EMBL AK107798             [GTCGGGGGGTCGGCCGCCCCGGACGGCGCCGCCGCCCACCGCCGATCGCCGTTGGTAGTGGTATGGTGTGGCAGCAGCGGCGGAGATTGGCCTCGTCCTCGCACGCCGGAGTCGCCGAGTTCATCCTGCCGCGGCCCGCGGGCCCTCGCTCGGGTGCTCGGGTCGGGGGAATCCTCTAAACCGTACGGCGTCGTGTCCGCGAGGGCCGCCGTACCAGATGCTGCTCAAGTAGCCCGGCGTGCATCTCGTTAGAGATCTATACGAAGGGGAGGACATGAACAGCTTCCAGCAGAGGCTCGCGGGGAGGTTCAGAGATCCGACCACACCACATTGGTCATCCCTAAGAAAGCGTGGAGGCGTCGAGCTACTAGATTTTCTGATAATGGCAATTTTATTAGGTTCTTAATTTCTCCGTGTTTCGAGTTCATACATGGAAATGCAAACCATTTTTTTGATGCATTGATAGGGAACAAGAAGTCGATATAATGTCGTCATGCTAACTCCTGGAATCAAAACCAAATGGTGAAATGGAGAATCATAGTCGT]




>consensus_5643#1
GTCGGGGGGTCGGCCGCCCCGGACGGCGCCGCCGCCCACCGCCGATCGCCGTTGGTAGTG
GTATGGTGTGGCAGCAGCGGCGGAGATTGGCCTCGTCCTCGCACGCCGGAGTCGCCGAGT
TCATCCTGCCGCGGCCCGCGGGCCCTCGCTCGGGTGCTCGGGTCGGGGGAATCCTCTAAA
CCGTACGGCGTCGTGTCCGCGAGGGCCGCCGTACCAGATGCTGCTCAAGTAGCCCGGCGT
GCATCTCGTTAGAGATCTATACGAAGGGGAGGACATGAACAGCTTCCAGCAGAGGCTCGC
GGGGAGGTTCAGAGATCCGACCACACCACATTGGTCATCCCTAAGAAAGCGTGGAGGCGT
CGAGCTACTAGATTTTCTGATAATGGCAATTTTATTAGGTTCTTAATTTCTCCGTGTTTC
GAGTTCATACATGGAAATGCAAACCATTTTTTTGATGCATTGATAGGGAACAAGAAGTCG
ATATAATGTCGTCATGCTAACTCCTGGAATCAAAACCAAATGGTGAAATGGAGAATCATA
GTCGT

consensusID : consensus_5643#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 402
fasta sequence

                              [CGCGGACGCTGGTGCNATNCGNGGTGCTCGGGTCGGGGGAATCCTCTAAACCGTACGGCGTCGTGTCCGCGAGGGCCGCCGTACCAAATGCTGCTCAAGTAGCCCGGCGTGCATCTCGTTAGAGATCTATACGAAGGGGAGGACATGAACAGCTTCCAGCAGAGGCTCGCGGGGAGGTTCAGAGATCCGACCACACCACATTGGTCATCCCTAAGAAAGCGTGGAGGCGTCGAGCTACTAGATTTTCTGATAATGGCAATTTTATTAGGTTCTTAATTTCTCCGTGTTTCGAGTTCATACATGGAAATGCAAACCATTTTTTTGATGCATTGATAGGGAACAAGAAGTCGATATAATGTCGTCATGCTAACTCCTGGAATCAAAACCAAATGGTGAAATGGA]

[+] EMBL AU092616             [CGCGGACGCTGGTGCNATNCGNGGTGCTCGGGTCGGGGGAATCCTCTAAACCGTACGGCGTCGTGTCCGCGAGGGCCGCCGTACCAAATGCTGCTCAAGTAGCCCGGCGTGCATCTCGTTAGAGATCTATACGAAGGGGAGGACATGAACAGCTTCCAGCAGAGGCTCGCGGGGAGGTTCAGAGATCCGACCACACCACATTGGTCATCCCTAAGAAAGCGTGGAGGCGTCGAGCTACTAGATTTTCTGATAATGGCAATTTTATTAGGTTCTTAATTTCTCCGTGTTTCGAGTTCATACATGGAAATGCAAACCATTTTTTTGATGCATTGATAGGGAACAAGAAGTCGATATAATGTCGTCATGCTAACTCCTGGAATCAAAACCAAATGGTGAAATGGA]




>consensus_5643#2
CGCGGACGCTGGTGCNATNCGNGGTGCTCGGGTCGGGGGAATCCTCTAAACCGTACGGCG
TCGTGTCCGCGAGGGCCGCCGTACCAAATGCTGCTCAAGTAGCCCGGCGTGCATCTCGTT
AGAGATCTATACGAAGGGGAGGACATGAACAGCTTCCAGCAGAGGCTCGCGGGGAGGTTC
AGAGATCCGACCACACCACATTGGTCATCCCTAAGAAAGCGTGGAGGCGTCGAGCTACTA
GATTTTCTGATAATGGCAATTTTATTAGGTTCTTAATTTCTCCGTGTTTCGAGTTCATAC
ATGGAAATGCAAACCATTTTTTTGATGCATTGATAGGGAACAAGAAGTCGATATAATGTC
GTCATGCTAACTCCTGGAATCAAAACCAAATGGTGAAATGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5643#1      GTCGGGGGGTCGGCCGCCCCGGACGGCGCCGCCGCCCACCGCCGATCGCCGTTGGTAGTG 60
consensus_5643#2      ------------------------------------------------------------
consensus_5643#0      ------------------------------------------------------------
                                                                                  

consensus_5643#1      GTATGGTGTGGCAGCAGCGGCGGAGATTGGCCTCGTCCTCGCACGCCGGAGTCGCCGAGT 120
consensus_5643#2      ------------------------------------------------------------
consensus_5643#0      --------------TGGCGGCGGAGATTGACCTCGTCCTCGCACGCCGGAGTCGCCGAGT 46
                                                                                  

consensus_5643#1      TCATCCTGCCGCGGCCCGCGGGCCCTCGCTCGGGTGCTCGGGTCGGGGGAATCCTCTAAA 180
consensus_5643#2      ---------CGCGGAC-GCTGGTGCNATNCGNGGTGCTCGGGTCGGGGGAATCCTCTAAA 50
consensus_5643#0      TCATCCTGCCGCAGCC--------CTCGCGCGGGTGCTCGGGT-GGGGGAAGCCTCTAAA 97
                               *** * *        *       *********** ******* ********

consensus_5643#1      CCGTACGGCGTCGTGT---------CCGCGAGGGCCGCCGTACCAGATGCTGCTCAAGTA 231
consensus_5643#2      CCGTACGGCGTCGTGT---------CCGCGAGGGCCGCCGTACCAAATGCTGCTCAAGTA 101
consensus_5643#0      CCGTACGGCGTCGTGTGACTCGTGTCCGCGAGGGCCGCCGTACCAGATGCTGCTCAAGTA 157
                      ****************         ******************** **************

consensus_5643#1      GCCCGGCGTGCATCTCGTTAGAGATCTATACGAAGGGGAGGACATGAACAGCTTCCAGCA 291
consensus_5643#2      GCCCGGCGTGCATCTCGTTAGAGATCTATACGAAGGGGAGGACATGAACAGCTTCCAGCA 161
consensus_5643#0      GCCCGGCGTGCATCTCGTTAGAGGTCTCTACGAAGGGGAGGAAATGAAGGGCTTCCAGCA 217
                      *********************** *** ************** *****  **********

consensus_5643#1      GA--GGCTCGCGGGGAGGTTCAGAGATCCGACCACACCACATTGGTCATCCCTAAGAAAG 349
consensus_5643#2      GA--GGCTCGCGGGGAGGTTCAGAGATCCGACCACACCACATTGGTCATCCCTAAGAAAG 219
consensus_5643#0      GATCAGCTCGCGGGGAGGTTCAGAGACCCGACCACACCACATTGGTCATCCCTAAGAAAG 277
                      **   ********************* *********************************

consensus_5643#1      CGTGGAGGCGTCGAGCTACTAGATTTTCTGATA----ATGGCAATTTTATTAGGTTCTTA 405
consensus_5643#2      CGTGGAGGCGTCGAGCTACTAGATTTTCTGATA----ATGGCAATTTTATTAGGTTCTTA 275
consensus_5643#0      CGTGGAGGCGTGGAGCTACTAGATTTCCTGATGTATTGGAGTACCTTGACGAAGCATGGG 337
                      *********** ************** *****        * *  ** *  * *      

consensus_5643#1      ATTTCTCCGTGTTTCGAGTTCATACATGGAAATGCAAACCATTTTTTTGATGCATTGATA 465
consensus_5643#2      ATTTCTCCGTGTTTCGAGTTCATACATGGAAATGCAAACCATTTTTTTGATGCATTGATA 335
consensus_5643#0      CTGGAAAGTTGTTTTTGGTGGTGATCACCCGGAGCAGATCTTGCGTCATGGACCTACTTA 397
                       *       *****   **    *         *** * * *   *      * *   **

consensus_5643#1      GGGAACAAGAAGTCGATATAATGTCGTCATGCTAACTCCTGGAATCAAAACCAAA--TGG 523
consensus_5643#2      GGGAACAAGAAGTCGATATAATGTCGTCATGCTAACTCCTGGAATCAAAACCAAA--TGG 393
consensus_5643#0      GCAGCTGAACAGTTTGGCTGGTCTTGCATTGT--GCCTGTCAGATTAGTGCTGTACTTGA 455
                      *      *  ***     *  * * *   **    *   *   ** *   *   *  ** 

consensus_5643#1      TGAAATGGAGAATCATAGTCGT-------------------------------------- 545
consensus_5643#2      TGAAATGGA--------------------------------------------------- 402
consensus_5643#0      TGCACTGTAGTCGTTTATGCATGAAATGAAATACAGAACCATATGCAGATTGCAGAACAA 515
                      ** * ** *                                                   

consensus_5643#1      ------------------------------------------------------------
consensus_5643#2      ------------------------------------------------------------
consensus_5643#0      ATTACTTTCCTTCTAAATAGGGTGAGATATGCTAGGTAAACCTTATTACTTTGTGGTGCT 575
                                                                                  

consensus_5643#1      -------------
consensus_5643#2      -------------
consensus_5643#0      GTTTGACAATGTA 588