These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5657#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 260 fasta sequence [AGCTGATGTCTTTTGATCACACTGCGATCAAATTATGCATCATTTGCAGTACAACTCCGCGTCAGGAAAAAGTAGAGGAGATATATTTCTTGTTTTACTTATACAGCATTTTTTTTTTCGAACCATCCGGTACGTACGTAGTAGTACTCCACGCGTTCACATCGATGATCGGGGACGATATCCTCATGTAGTACTTATGCAAAAGCGTTGGCGTAAACTGACGAACTGAACGGACGGACGGTCGGATTTAGGGCTCCCAT] [+] EMBL CF295391 [AGCTGATGTCTTTTGATCACACTGCGATCAAATTATGCATCATTTGCAGTACAACTCCGCGTCAGGAAAAAGTAGAGGAGATATATTTCTTGTTTTACTTATACAGCATTTTTTTTTTCGAACCATCCGGTACGTACGTAGTAGTACTCCACGCGTTCACATCGATGATCGGGGACGATATCCTCATGTAGTACTTATGCAAAAGCGTTGGCGTAAACTGACGAACTGAACGGACGGACGGTCGGATTTAGGGCTCCCAT] consensusID : consensus_5657#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 160 fasta sequence [CTGGACTGAAGGAGTTGTACTGCCTATGATGCATAATTTGATCGCAGTGTGATCAAAAGACATCAGCTATAATGTCTTAATAATATTATTATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF336347 [CTGGACTGAAGGAGTTGTACTGCCTATGATGCATAATTTGATCGCAGTGTGATCAAAAGACATCAGCTATAATGTCTTAATAATATTATTATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF337859 [CTGGACTGAAGGAGTTGTACTGCCTATGATGCATAATTTGATCGCAGTGTGATCAAAAGACATCAGCTATAATGTCTTAATAATATTATTATGANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5657#0 AGCTGATGTCTTTTGATCACACTGCGATCAAATTATGCATCATTTGCAGTACAACTCCGC 60 consensus_5657#1 ------------------------------------------------------------ consensus_5657#0 GTCAGGAAAAAGTAGAGGAGATATATTTCTTGTTTTACTTATACAGCATTTTTTTTTTCG 120 consensus_5657#1 --------------------------------CTGGACTGAAGGAGTTGTACTGCCTATG 28 * *** * ** * * * * consensus_5657#0 AACCATCCGGTACGTACGTAGTAGTACTCCACGCGTTCACATCGATGATCGGGGACGATA 180 consensus_5657#1 ATGCAT--AATTTGATCGCAGTGTGATCAAAAGACATCAGCTATAATGTCTTA-ATAATA 85 * *** * * ** *** * * * *** * * ** * *** consensus_5657#0 TCCTCATGTAGTACTTATGCAAAAGCGTTGGCGTAAACTGACGAACTGAACGGACGGACG 240 consensus_5657#1 TTATTATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 145 * * *** * * * **** *** * ** ** * * consensus_5657#0 GTCGGATTTAGGGCTCCCAT 260 consensus_5657#1 AAAAAAAAAAAAAAA----- 160 * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||