cluster # 5657

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Oryza sativa
cluster # 5657 cluster # 5657 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5657#0 length = 260 sequences # 1

consensus_5657#1 length = 160 sequences # 2

consensusID : consensus_5657#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 260
fasta sequence

                              [AGCTGATGTCTTTTGATCACACTGCGATCAAATTATGCATCATTTGCAGTACAACTCCGCGTCAGGAAAAAGTAGAGGAGATATATTTCTTGTTTTACTTATACAGCATTTTTTTTTTCGAACCATCCGGTACGTACGTAGTAGTACTCCACGCGTTCACATCGATGATCGGGGACGATATCCTCATGTAGTACTTATGCAAAAGCGTTGGCGTAAACTGACGAACTGAACGGACGGACGGTCGGATTTAGGGCTCCCAT]

[+] EMBL CF295391             [AGCTGATGTCTTTTGATCACACTGCGATCAAATTATGCATCATTTGCAGTACAACTCCGCGTCAGGAAAAAGTAGAGGAGATATATTTCTTGTTTTACTTATACAGCATTTTTTTTTTCGAACCATCCGGTACGTACGTAGTAGTACTCCACGCGTTCACATCGATGATCGGGGACGATATCCTCATGTAGTACTTATGCAAAAGCGTTGGCGTAAACTGACGAACTGAACGGACGGACGGTCGGATTTAGGGCTCCCAT]




>consensus_5657#0
AGCTGATGTCTTTTGATCACACTGCGATCAAATTATGCATCATTTGCAGTACAACTCCGC
GTCAGGAAAAAGTAGAGGAGATATATTTCTTGTTTTACTTATACAGCATTTTTTTTTTCG
AACCATCCGGTACGTACGTAGTAGTACTCCACGCGTTCACATCGATGATCGGGGACGATA
TCCTCATGTAGTACTTATGCAAAAGCGTTGGCGTAAACTGACGAACTGAACGGACGGACG
GTCGGATTTAGGGCTCCCAT

consensusID : consensus_5657#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 160
fasta sequence

                              [CTGGACTGAAGGAGTTGTACTGCCTATGATGCATAATTTGATCGCAGTGTGATCAAAAGACATCAGCTATAATGTCTTAATAATATTATTATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF336347             [CTGGACTGAAGGAGTTGTACTGCCTATGATGCATAATTTGATCGCAGTGTGATCAAAAGACATCAGCTATAATGTCTTAATAATATTATTATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF337859             [CTGGACTGAAGGAGTTGTACTGCCTATGATGCATAATTTGATCGCAGTGTGATCAAAAGACATCAGCTATAATGTCTTAATAATATTATTATGANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA   ]




>consensus_5657#1
CTGGACTGAAGGAGTTGTACTGCCTATGATGCATAATTTGATCGCAGTGTGATCAAAAGA
CATCAGCTATAATGTCTTAATAATATTATTATGAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5657#0      AGCTGATGTCTTTTGATCACACTGCGATCAAATTATGCATCATTTGCAGTACAACTCCGC 60
consensus_5657#1      ------------------------------------------------------------
                                                                                  

consensus_5657#0      GTCAGGAAAAAGTAGAGGAGATATATTTCTTGTTTTACTTATACAGCATTTTTTTTTTCG 120
consensus_5657#1      --------------------------------CTGGACTGAAGGAGTTGTACTGCCTATG 28
                                                       *  *** *   **   *  *   *  *

consensus_5657#0      AACCATCCGGTACGTACGTAGTAGTACTCCACGCGTTCACATCGATGATCGGGGACGATA 180
consensus_5657#1      ATGCAT--AATTTGATCGCAGTGTGATCAAAAGACATCAGCTATAATGTCTTA-ATAATA 85
                      *  ***    *  *  ** ***   *    * *   ***  *  *   **    *  ***

consensus_5657#0      TCCTCATGTAGTACTTATGCAAAAGCGTTGGCGTAAACTGACGAACTGAACGGACGGACG 240
consensus_5657#1      TTATTATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 145
                      *  * *** *  *   *   ****          ***   *  **   **   *   *  

consensus_5657#0      GTCGGATTTAGGGCTCCCAT 260
consensus_5657#1      AAAAAAAAAAAAAAA----- 160
                           *   *