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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1349 fasta sequence
[TCTCGGCCCATCAGGCCCAGCACCCAAACCGCTGTGCTCCCTTCGTGGCGGCGACGCCGACGAGGCGTACGCGTCTTCTCCGCCGCCGCCGCCGCCGCCGCCGTCCGTCCGTCCGTCCGGTCGGCCAGCCGGCAACGGCCACCCGTGAGCGACATCCGCGACCGGCCAGAACCGCTTCCTTTGGTAGTCCGTGCCCGACGCCAACAAGCGGAGGAGATATCCCACAATGGGCATCAGTAAGACTGAAGTGAATCTGCTGCGGTTGCTTGACTCGGCTCCGCGGCAGCAGAACCAGGCTAAACTCATTCATTATGTCACCACATCGAGGGAACTGTTGGAGAAGCTGGCAGCGGAAAATACGTCAGAAGGGATATCAAGTATTGCAAAAGGAAGGCTAAATGAGTATTCAGAGAGGATTGAGGAACTTGCCGCAAGGCTTGCTTCTCTAGTGCCTGGTTACGAAAATGCTGTTGAAGCCATCAGAAAAGAAGAAAGTTACCTTGAAGGGGAACAAATTAGAAGTCCAATAGCCTTATCCCCTGGATTGAGGAGGCGATTGACAGCTCTGCAAGAGATTGAACAACCTACCAATGCAAAAGAAAGAAATGTTGCAGAACCTCTTAGATTAGATGAAGCAGCCCAGGCAAACATAGAGAAATATAGGAATCTGCAAGAAGATTTGACTGATGAGATTGTTGAATTAGCACGCCAGCTGAAGGATAGCAGTCTTATGATGAACCAGTCTGTGCAAGCAACAGAGAAGATACTTGATTCAACTGAAAGGGCTGTGGCATATAGCTTGGCAGGCACTGACCGTGCAAATGCACAAGCTGTGGAGGTGTCTTCGTTAACCTCCAAAACAACTTGTTTCCAGTGGTTTCTGCTTTTTGTAATGACCTGTATGTTCATCATGGTTGTTCTACTTATACGGGTAACCTAAGGCGTGGCATTCACTGAAACAAATGTGACCAGTTACAGTACATTACTGCTCGAAGATAGACCTCCATTACAAAATGCTGTACTGACTAGTATAAGTGATAGATGCTGCGACTTTCTTTAGTCAGCTAGCTAGAAGCTGTTAATAAATGAATATAGCAGGCTTTTGGCCATGTATAACCATGCTGACCGAGTTTGAATTCATTACCTAAAAAAAAATGGATATAGCAGGCAACCGCTGATATGATTTTTTTTCCCTCATTTTTTTGATGTGCAATGAGTTGTTCGGTGCTCATATTTTTGTAAGCCGCTGATATAGCAGGCAGACGCTGATATACTTCTTAACTTCCATTTGATGTATGATCAATGTATATATACTAAATTGCAAGCATATGTGTTGCCTTCAAACGAAA]
[+] EMBL AK071858 [TCTCGGCCCATCAGGCCCAGCACCCAAACCGCTGTGCTCCCTTCGTGGCGGCGACGCCGACGAGGCGTACGCGTCTTCTCCGCCGCCGCCGCCGCCGCCGCCGTCCGTCCGTCCGTCCGGTCGGCCAGCCGGCAACGGCCACCCGTGAGCGACATCCGCGACCGGCCAGAACCGCTTCCTTTGGTAGTCCGTGCCCGACGCCAACAAGCGGAGGAGATATCCCACAATGGGCATCAGTAAGACTGAAGTGAATCTGCTGCGGTTGCTTGACTCGGCTCCGCGGCAGCAGAACCAGGCTAAACTCATTCATTATGTCACCACATCGAGGGAACTGTTGGAGAAGCTGGCAGCGGAAAATACGTCAGAAGGGATATCAAGTATTGCAAAAGGAAGGCTAAATGAGTATTCAGAGAGGATTGAGGAACTTGCCGCAAGGCTTGCTTCTCTAGTGCCTGGTTACGAAAATGCTGTTGAAGCCATCAGAAAAGAAGAAAGTTACCTTGAAGGGGAACAAATTAGAAGTCCAATAGCCTTATCCCCTGGATTGAGGAGGCGATTGACAGCTCTGCAAGAGATTGAACAACCTACCAATGCAAAAGAAAGAAATGTTGCAGAACCTCTTAGATTAGATGAAGCAGCCCAGGCAAACATAGAGAAATATAGGAATCTGCAAGAAGATTTGACTGATGAGATTGTTGAATTAGCACGCCAGCTGAAGGATAGCAGTCTTATGATGAACCAGTCTGTGCAAGCAACAGAGAAGATACTTGATTCAACTGAAAGGGCTGTGGCATATAGCTTGGCAGGCACTGACCGTGCAAATGCACAAGCTGTGGAGGTGTCTTCGTTAACCTCCAAAACAACTTGTTTCCAGTGGTTTCTGCTTTTTGTAATGACCTGTATGTTCATCATGGTTGTTCTACTTATACGGGTAACCTAAGGCGTGGCATTCACTGAAACAAATGTGACCAGTTACAGTACATTACTGCTCGAAGATAGACCTCCATTACAAAATGCTGTACTGACTAGTATAAGTGATAGATGCTGCGACTTTCTTTAGTCAGCTAGCTAGAAGCTGTTAATAAATGAATATAGCAGGCTTTTGGCCATGTATAACCATGCTGACCGAGTTTGAATTCATTACCTAAAAAAAAATGGATATAGCAGGCAACCGCTGATATGATTTTTTTTCCCTCATTTTTTTGATGTGCAATGAGTTGTTCGGTGCTCATATTTTTGTAAGCCGCTGATATAGCAGGCAGACGCTGATATACTTCTTAACTTCCATTTGATGTATGATCAATGTATATATACTAAATTGCAAGCATATGTGTTGCCTTCAAACGAAA]
consensusID : consensus_5662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 690 fasta sequence
[CCAGAACTTCTTAGATTGGATGCAGCAGCTCAGGCAAACATAGAGAAACATAGGAATTTGCAAGTAAGATTTGACTAATGAAATTGTTGAATTAGCACGCCAGCTGAAGGATAGCAGTCTTATGATGAACCAGTCTGTGCAAGCAACAGAGAAGATACTTGATTCAACTGAAAGGGCTGTGGCATATAGCTTGGCAGGCACTGACCGTGCAAATGCACGAGCTGTGGAGGTGTCTTCGTTAACCTCCAAAACAACTTGTTTCCACTGGTTTCTGCTTTTTGTAATGACCTGTATGTTCATCATGGTTGTTCTACTTATACGGGTAACCTAAGGCGTGGCATTCACTGAAACAAATGTACCAGTTACGATACATTACTGCTCGAAGATAGACCTCCATTACAAAATGCTGTACTGACTAGTATAAGTGATAGATGCTGCGACTTTCTTTAGTCAGCTAGCTAGAAAAATATAGCAGGTTTTTGGCCATGTATTACCATGCTGTTGGATGGAGAGACCGAGTTTGAATCCATTACCTAAAAAAATGGATATAGCAGACAACCGCTGATGATTTTTCCCCTCATTTTTTTGTAAGTGCAATGAGTTGTTCGGAGTTCATATTTTTGTAAGCCGCTGATATAGTAGGCAGACGCTGATATACTTCTTAATTTCCATTTGATGTATTTATACTAA]
[-] EMBL CB627239 [CCAGAACTTCTTAGATTGGATGCAGCAGCTCAGGCAAACATAGAGAAACATAGGAATTTGCAAGTAAGATTTGACTAATGAAATTGTTGAATTAGCACGCCAGCTGAAGGATAGCAGTCTTATGATGAACCAGTCTGTGCAAGCAACAGAGAAGATACTTGATTCAACTGAAAGGGCTGTGGCATATAGCTTGGCAGGCACTGACCGTGCAAATGCACGAGCTGTGGAGGTGTCTTCGTTAACCTCCAAAACAACTTGTTTCCACTGGTTTCTGCTTTTTGTAATGACCTGTATGTTCATCATGGTTGTTCTACTTATACGGGTAACCTAAGGCGTGGCATTCACTGAAACAAATGTACCAGTTACGATACATTACTGCTCGAAGATAGACCTCCATTACAAAATGCTGTACTGACTAGTATAAGTGATAGATGCTGCGACTTTCTTTAGTCAGCTAGCTAGAAAAATATAGCAGGTTTTTGGCCATGTATTACCATGCTGTTGGATGGAGAGACCGAGTTTGAATCCATTACCTAAAAAAATGGATATAGCAGACAACCGCTGATGATTTTTCCCCTCATTTTTTTGTAAGTGCAATGAGTTGTTCGGAGTTCATATTTTTGTAAGCCGCTGATATAGTAGGCAGACGCTGATATACTTCTTAATTTCCATTTGATGTATTTATACTAA]
[-] EMBL CB627238 [ CTGACTAGTATAAGTGATAGATGCTGCGACTTTCTTTAGTCAGCTAGCTAGAAAAATATAGCAGGTTTTTGGCCATGTATTACCATGCTGTTGGATGGAGAGACCGAGTTTGAATCCATTACCTAAAAAAATGGATATAGCAGACACCCGCTGATGATTTTTCCCCTCATTTTTTTGTAAGTGCAATGAGTTGTTCGGAGTTCATATTTTTGTAAGCCGCTGATATAGTAGGCAGACGCTGATATACTTCTTAATTTCCATTTGATGTATTTATACTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5662#0 TCTCGGCCCATCAGGCCCAGCACCCAAACCGCTGTGCTCCCTTCGTGGCGGCGACGCCGA 60
consensus_5662#1 ------------------------------------------------------------
consensus_5662#0 CGAGGCGTACGCGTCTTCTCCGCCGCCGCCGCCGCCGCCGCCGTCCGTCCGTCCGTCCGG 120
consensus_5662#1 ------------------------------------------------------------
consensus_5662#0 TCGGCCAGCCGGCAACGGCCACCCGTGAGCGACATCCGCGACCGGCCAGAACCGCTTCCT 180
consensus_5662#1 ------------------------------------------------------------
consensus_5662#0 TTGGTAGTCCGTGCCCGACGCCAACAAGCGGAGGAGATATCCCACAATGGGCATCAGTAA 240
consensus_5662#1 ------------------------------------------------------------
consensus_5662#0 GACTGAAGTGAATCTGCTGCGGTTGCTTGACTCGGCTCCGCGGCAGCAGAACCAGGCTAA 300
consensus_5662#1 ------------------------------------------------------------
consensus_5662#0 ACTCATTCATTATGTCACCACATCGAGGGAACTGTTGGAGAAGCTGGCAGCGGAAAATAC 360
consensus_5662#1 ------------------------------------------------------------
consensus_5662#0 GTCAGAAGGGATATCAAGTATTGCAAAAGGAAGGCTAAATGAGTATTCAGAGAGGATTGA 420
consensus_5662#1 ------------------------------------------------------------
consensus_5662#0 GGAACTTGCCGCAAGGCTTGCTTCTCTAGTGCCTGGTTACGAAAATGCTGTTGAAGCCAT 480
consensus_5662#1 ------------------------------------------------------------
consensus_5662#0 CAGAAAAGAAGAAAGTTACCTTGAAGGGGAACAAATTAGAAGTCCAATAGCCTTATCCCC 540
consensus_5662#1 ------------------------------------------------------------
consensus_5662#0 TGGATTGAGGAGGCGATTGACAGCTCTGCAAGAGATTGAACAACCTACCAATGCAAAAGA 600
consensus_5662#1 ------------------------------------------------------------
consensus_5662#0 AAGAAATGTTGCAGAACCTCTTAGATTAGATGAAGCAGCCCAGGCAAACATAGAGAAATA 660
consensus_5662#1 ----------CCAGAACTTCTTAGATTGGATGCAGCAGCTCAGGCAAACATAGAGAAACA 50
****** ********* **** ****** ****************** *
consensus_5662#0 TAGGAATCTGCAAG-AAGATTTGACTGATGAGATTGTTGAATTAGCACGCCAGCTGAAGG 719
consensus_5662#1 TAGGAATTTGCAAGTAAGATTTGACTAATGAAATTGTTGAATTAGCACGCCAGCTGAAGG 110
******* ****** *********** **** ****************************
consensus_5662#0 ATAGCAGTCTTATGATGAACCAGTCTGTGCAAGCAACAGAGAAGATACTTGATTCAACTG 779
consensus_5662#1 ATAGCAGTCTTATGATGAACCAGTCTGTGCAAGCAACAGAGAAGATACTTGATTCAACTG 170
************************************************************
consensus_5662#0 AAAGGGCTGTGGCATATAGCTTGGCAGGCACTGACCGTGCAAATGCACAAGCTGTGGAGG 839
consensus_5662#1 AAAGGGCTGTGGCATATAGCTTGGCAGGCACTGACCGTGCAAATGCACGAGCTGTGGAGG 230
************************************************ ***********
consensus_5662#0 TGTCTTCGTTAACCTCCAAAACAACTTGTTTCCAGTGGTTTCTGCTTTTTGTAATGACCT 899
consensus_5662#1 TGTCTTCGTTAACCTCCAAAACAACTTGTTTCCACTGGTTTCTGCTTTTTGTAATGACCT 290
********************************** *************************
consensus_5662#0 GTATGTTCATCATGGTTGTTCTACTTATACGGGTAACCTAAGGCGTGGCATTCACTGAAA 959
consensus_5662#1 GTATGTTCATCATGGTTGTTCTACTTATACGGGTAACCTAAGGCGTGGCATTCACTGAAA 350
************************************************************
consensus_5662#0 CAAATGTGACCAGTTACAGTACATTACTGCTCGAAGATAGACCTCCATTACAAAATGCTG 1019
consensus_5662#1 CAAATGT-ACCAGTTACGATACATTACTGCTCGAAGATAGACCTCCATTACAAAATGCTG 409
******* ********* *****************************************
consensus_5662#0 TACTGACTAGTATAAGTGATAGATGCTGCGACTTTCTTTAGTCAGCTAGCTAGAAGCTGT 1079
consensus_5662#1 TACTGACTAGTATAAGTGATAGATGCTGCGACTTTCTTTAGTCAGCTAGCTAGAAA---- 465
*******************************************************
consensus_5662#0 TAATAAATGAATATAGCAGGCTTTTGGCCATGTATAACCATGCTG------------ACC 1127
consensus_5662#1 ---------AATATAGCAGGTTTTTGGCCATGTATTACCATGCTGTTGGATGGAGAGACC 516
*********** ************** ********* ***
consensus_5662#0 GAGTTTGAATTCATTACCTAAAAAAAAATGGATATAGCAGGCAACCGCTGATATGATTTT 1187
consensus_5662#1 GAGTTTGAATCCATTACCTAAAAAAA--TGGATATAGCAGACAACCGCTGATGA----TT 570
********** *************** ************ *********** **
consensus_5662#0 TTTTCCCTCATTTTTTTG-ATGTGCAATGAGTTGTTCGGTGCTCATATTTTTGTAAGCCG 1246
consensus_5662#1 TTTCCCCTCATTTTTTTGTAAGTGCAATGAGTTGTTCGGAGTTCATATTTTTGTAAGCCG 630
*** ************** * ****************** * ******************
consensus_5662#0 CTGATATAGCAGGCAGACGCTGATATACTTCTTAACTTCCATTTGATGTATGATCAATGT 1306
consensus_5662#1 CTGATATAGTAGGCAGACGCTGATATACTTCTTAATTTCCATTTGATGTATTTATACTAA 690
********* ************************* *************** * *
consensus_5662#0 ATATATACTAAATTGCAAGCATATGTGTTGCCTTCAAACGAAA 1349
consensus_5662#1 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||