cluster # 5666

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Oryza sativa
cluster # 5666 cluster # 5666 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5666#0 length = 403 sequences # 1

consensus_5666#1 length = 357 sequences # 2

consensusID : consensus_5666#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACAAGCAATTAAGCGGTGTTTATCCCCCCTAATTAAAATCGAGACCCTGAAATAGCTTAAACACTGGTGGTACCATGAAAAAATTTATCCCCCTGGAGTACTGGACATTAAAAATTTACCACTTAACTTACCCCCTTACCCATGGTTTCAAATCCATGCCTGCGGGAAACAATTACCGCAACACACACAGGAAGTCTGAATTTTATAACATCCATTTTTTTTTTTTTTCTCCCCCCAATTCATTAACATTTTATACATGCCTACTCCCCCAAAAAAAAAAGAAGAAACCCGAAGAGAACCTTTTCCCTTGCCCAATTATTGGTTTCACCAACCTGAACTCATTAAGCTCCTTGAAAAG]

[+] EMBL CF298182             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACAAGCAATTAAGCGGTGTTTATCCCCCCTAATTAAAATCGAGACCCTGAAATAGCTTAAACACTGGTGGTACCATGAAAAAATTTATCCCCCTGGAGTACTGGACATTAAAAATTTACCACTTAACTTACCCCCTTACCCATGGTTTCAAATCCATGCCTGCGGGAAACAATTACCGCAACACACACAGGAAGTCTGAATTTTATAACATCCATTTTTTTTTTTTTTCTCCCCCCAATTCATTAACATTTTATACATGCCTACTCCCCCAAAAAAAAAAGAAGAAACCCGAAGAGAACCTTTTCCCTTGCCCAATTATTGGTTTCACCAACCTGAACTCATTAAGCTCCTTGAAAAG]




>consensus_5666#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACAAGCAATTAAGCG
GTGTTTATCCCCCCTAATTAAAATCGAGACCCTGAAATAGCTTAAACACTGGTGGTACCA
TGAAAAAATTTATCCCCCTGGAGTACTGGACATTAAAAATTTACCACTTAACTTACCCCC
TTACCCATGGTTTCAAATCCATGCCTGCGGGAAACAATTACCGCAACACACACAGGAAGT
CTGAATTTTATAACATCCATTTTTTTTTTTTTTCTCCCCCCAATTCATTAACATTTTATA
CATGCCTACTCCCCCAAAAAAAAAAGAAGAAACCCGAAGAGAACCTTTTCCCTTGCCCAA
TTATTGGTTTCACCAACCTGAACTCATTAAGCTCCTTGAAAAG

consensusID : consensus_5666#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 357
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAAACTAAAACACTGGTGGTACCATGAAAAAATTTATCCCCCTGGAGTACTGGACATTAAAAATTTACCACTTAACTTACCCCCTTACCCATGCATTCAAATCCATGCCTGCGGGAAACAATTTCCCCAACACACACAGGAAGTCTGAATTTTATAACATCCATTTTTTTTTTTTTCCTCCCCCCAATTTATTAACATTTTATACATGCCTACTCCCCCAAAAAAAAAAGAAGAAACCAGAAGAGAACATTTTTCATTGCCCAATTATTGGTTTTACCAACCTGAACTCATTAAGCTCCTTGAAAAGCCCTGG]

[+] EMBL CF318045             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAAACTAAAACACTGGTGGTACCATGAAAAAATTTATCCCCCTGGAGTACTGGACATTAAAAATTTACCACTTAACTTACCCCCTTACCCATGCATTCAAATCCATGCCTGCGGGAAACAATTTCCCCAACACACACAGGAAGTCTGAATTTTATAACATCCATTTTTTTTTTTTTCCTCCCCCCAATTTATTAACATTTTATACATGCCTACTCCCCCAAAAAAAAAAGAAGAAACCAGAAGAGAACATTTTTCATTGCCCAATTATTGGTTTTACCAACCTGAACTCATTAAGCTCCTTGAAAAGCCCTGG]
[+] EMBL CF301702             [                                                  tttttttTGGTGGTACCATGAAAAAGTTTATCCCCCTGGAGTACTGGACATTAAAAATTCACCACTTAACTTACCCCCTTACCCATGCATTCAAATCCATGCCTGCGGGAAACAATTACCACAACACACACAGGAAGTTTGAATTTTATAAAATTCATTTTTTTTTTTTTTCTCCCCCCAATTTATTAACATTTTATACATGCCTACTCCCCaa                                                                                             ]




>consensus_5666#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAAACTAAAACACTGG
TGGTACCATGAAAAAATTTATCCCCCTGGAGTACTGGACATTAAAAATTTACCACTTAAC
TTACCCCCTTACCCATGCATTCAAATCCATGCCTGCGGGAAACAATTTCCCCAACACACA
CAGGAAGTCTGAATTTTATAACATCCATTTTTTTTTTTTTCCTCCCCCCAATTTATTAAC
ATTTTATACATGCCTACTCCCCCAAAAAAAAAAGAAGAAACCAGAAGAGAACATTTTTCA
TTGCCCAATTATTGGTTTTACCAACCTGAACTCATTAAGCTCCTTGAAAAGCCCTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5666#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACAAGCAATTAAGCG 60
consensus_5666#1      ----TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------------- 40
                          ****************************************                

consensus_5666#0      GTGTTTATCCCCCCTAATTAAAATCGAGACCCTGAAATAGCTTAAACACTGGTGGTACCA 120
consensus_5666#1      --------------------------------TGAAAAAACTAAAACACTGGTGGTACCA 68
                                                      ***** * ** *****************

consensus_5666#0      TGAAAAAATTTATCCCCCTGGAGTACTGGACATTAAAAATTTACCACTTAACTTACCCCC 180
consensus_5666#1      TGAAAAAATTTATCCCCCTGGAGTACTGGACATTAAAAATTTACCACTTAACTTACCCCC 128
                      ************************************************************

consensus_5666#0      TTACCCATGGTTTCAAATCCATGCCTGCGGGAAACAATTACCGCAACACACACAGGAAGT 240
consensus_5666#1      TTACCCATGCATTCAAATCCATGCCTGCGGGAAACAATTTCCCCAACACACACAGGAAGT 188
                      *********  **************************** ** *****************

consensus_5666#0      CTGAATTTTATAACATCCATTTTTTTTTTTTTTCTCCCCCCAATTCATTAACATTTTATA 300
consensus_5666#1      CTGAATTTTATAACATCCATTTTTTTTTTTTTCCTCCCCCCAATTTATTAACATTTTATA 248
                      ******************************** ************ **************

consensus_5666#0      CATGCCTACTCCCCCAAAAAAAAAAGAAGAAACCCGAAGAGAACCTTTTCCCTTGCCCAA 360
consensus_5666#1      CATGCCTACTCCCCCAAAAAAAAAAGAAGAAACCAGAAGAGAACATTTTTCATTGCCCAA 308
                      ********************************** ********* **** * ********

consensus_5666#0      TTATTGGTTTCACCAACCTGAACTCATTAAGCTCCTTGAAAAG------ 403
consensus_5666#1      TTATTGGTTTTACCAACCTGAACTCATTAAGCTCCTTGAAAAGCCCTGG 357
                      ********** ********************************