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Oryza sativa
cluster # 5679 cluster # 5679       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5679#0 length = 992 sequences # 3  

consensusID : consensus_5679#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 992
fasta sequence
                              [TGGTGGGCGAGCACCTCCACCACCGCCTGCCCCTGGGGGAAGGCTCGGTGGTCCTCCCCCACCTCCACCTCCTGGTGGACGTGCACCACCTCCTCCTAGAGGACCAGGAGCACCACCACCTCCAGGAGGCAATCCTAGTAGTTTAATAGGTAGAGGGCGTGGGGTGGTACGTGCTTCAGGATCAGGTTTTGGGGCTGCAGCTGCACGTAAATCAACTTTAAAGCCATTACATTGGATCAAGGTGACTAGAGCTTTGCAAGGAAGTCTATGGGAAGAATTACAGCGAAATGATGACTCACAGAGTGTTTCGGAGTTTGATTTGTCAGAGCTGGAAAGCCTTTTTCCAGCAGCTGTTCCAAAACCGAATGACAGCTCTAAATCTGATTCACGTAGAAAATCGCTTGGTTCAAAGCCAGAAAAAGTTCACCTAATTGAGTTGAGGAGGGCAAACAACACAGAGATCATGCTGACAAAAGTGAAGATGCCACTGCCAGATTTGGTGAGTGCGGCTTTGGCACTGGACCAATCTACCTTGGATGTTGATCAAGTGGAGAATCTCATAAAGTTCTGTCCTACAAAAGAAGAAATGGAACTTCTCAAGAATTACACTGGAGATAAGGAAAATCTGGGTAAATGCGAACAGTTCTTCCTAGAATTGATGAAAGTGCCACGAATGGAGTCAAAACTGCGGGTGTTCTCCTTCAAGATCCAGTTTGGTTCGCAAGTCGCAGATCTTCGAAAAAGTTTGAACACCATAGACTCTTCATGTGATGAGATTCGAAGTTCTCTCAAGTTAAAAGAAATCATGAAGAAAATTCTCCTCCTTGGGAATACATTGAACCAGGGTACTGCTAGAGGTGCTGCAGTTGGCTTCCGGTTGGACAGTCTTCTAAAACTAACAGATACCCGAGCAACAAATAATAAAATGACACTTATGCACTACCTCTGCAAGGTACTTGCTGCAAAATCATCACAGCTTCTGGACTTCTACA]

[+] EMBL CB627620             [TGGTGGGCGAGCACCTCCACCACCGCCTGCCCCTGGGGGAAGGCTCGGTGGTCCTCCCCCACCTCCACCTCCTGGTGGACGTGCACCACCTCCTCCTAGAGGACCAGGAGCACCACCACCTCCAGGAGGCAATCCTAGTAGTTTAATAGGTAGAGGGCGTGGGGTGGTACGTGCTTCAGGATCAGGTTTTGGGGCTGCAGCTGCACGTAAATCAACTTTAAAGCCATTACATTGGATCAAGGTGACTAGAGCTTTGCAAGGAAGTCTATGGGAAGAATTACAGCGAAATGATGACTCACAGAGTGTTTCGGAGTTTGATTTGTCAGAGCTGGAAAGCCTTTTTCCAGCAGCTGTTCCAAAACCGAATGACAGCTCTAAATCTGATTCACGTAGAAAATCGCTTGGTTCAAAGCCAGAAAAAGTTCACCTAATTGAGTTGAGGAGGGCAAACAACACAGAGATCATGCTGACAAAAGTGAAGATGCCACTGCCAGATTTGGTGAGTGCGGCTTTGGCACTGGACCAATCTACCTTGGATGTTGATCAAGTGGAGAATCTCATAAAGTTCTGTCCTACAAAAGAAGAAATGGAACTTCTCAAGAATTACACTGGAGATAAGGAAAATCTGGGTAAATGCGAACAGTTCTTCCTAGAATTGATGAAAGTGCCACGAATGGAGTCAAAACTGCGGGTGTTCTCCTTCAAGATCCAGTTTGGTTCGCAAGTCGCAGATCTTCGAAAAAGTT                                                                                                                                                                                                                                                      ]
[+] EMBL CB636379             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTGCGGCTTTGGCACTGGACCAATCTACCTTGGATGTTGATCAAGTGGAGAATCTCATAAAGTTCTGTCCTACAAAAGAAGAAATGGAACTTCTCAAGAATTACACTGGAGATAAGGAAAATCTGGGTAAATGCGAACAGTTCTTCCTAGAATTGATGAAAGTGCCACGAATGGAGTCAAAACTGCGGGTGTTCTCCTTCAAGATCCAGTTTGGTTCGCAAGTCGCAGATCTTCGAAAAAGTTTGAACACCATAGACTCTTCATGTGATGAGATTCGAAGTTCTCTCAAGTTAAAAGAAATCATGAAGAAAATTCTCCTCCTTGGGAATACATTGAACCAGGGTACTGCTAGAGGTGCTGCAGTTGGCTTCCGGTTGGACAGTCTTCTAAAACTAACAGATACCCGAGCAACAAATAATAAAATGACACTTATGCACTACCTCTGCAAGGTACTTGCTGCAAAATCATCACAGCTTCTGGACTTCTACA]
[+] EMBL CB636368             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTGCGGCTTTGGCACTGGACCAATCTACCTTGGATGTTGATCAAGTGGAGAATCTCATAAAGTTCTGTCCTACAAAAGAAGAAATGGAACTTCTCAAGAATTACACTGGAGATAAGGAAAATCTGGGTAAATGCGAACAGTTCTTCCTAGAATTGATGAAAGTGCCACGAATGGAGTCAAAACTGCGGGTGTTCTCCTTCAAGATCCAGTTTGGTTCGCAAGTCGCAGATCTTCGAAAAAGTTTGAACACCATAGACTCTTCATGTGATGAGATTCGAAGTTCTCTCAAGTTAAAAGAAATCATGAAGAAAATTCTCCTCCTTGGGAATACATTGAACCAGGGTACTGCTAGAGGTGCTGCAGTTGGCTTCCGGTTGGACAGTCTTCTNAAACTCAC                                                                                            ]


>consensus_5679#0 TGGTGGGCGAGCACCTCCACCACCGCCTGCCCCTGGGGGAAGGCTCGGTGGTCCTCCCCC ACCTCCACCTCCTGGTGGACGTGCACCACCTCCTCCTAGAGGACCAGGAGCACCACCACC TCCAGGAGGCAATCCTAGTAGTTTAATAGGTAGAGGGCGTGGGGTGGTACGTGCTTCAGG ATCAGGTTTTGGGGCTGCAGCTGCACGTAAATCAACTTTAAAGCCATTACATTGGATCAA GGTGACTAGAGCTTTGCAAGGAAGTCTATGGGAAGAATTACAGCGAAATGATGACTCACA GAGTGTTTCGGAGTTTGATTTGTCAGAGCTGGAAAGCCTTTTTCCAGCAGCTGTTCCAAA ACCGAATGACAGCTCTAAATCTGATTCACGTAGAAAATCGCTTGGTTCAAAGCCAGAAAA AGTTCACCTAATTGAGTTGAGGAGGGCAAACAACACAGAGATCATGCTGACAAAAGTGAA GATGCCACTGCCAGATTTGGTGAGTGCGGCTTTGGCACTGGACCAATCTACCTTGGATGT TGATCAAGTGGAGAATCTCATAAAGTTCTGTCCTACAAAAGAAGAAATGGAACTTCTCAA GAATTACACTGGAGATAAGGAAAATCTGGGTAAATGCGAACAGTTCTTCCTAGAATTGAT GAAAGTGCCACGAATGGAGTCAAAACTGCGGGTGTTCTCCTTCAAGATCCAGTTTGGTTC GCAAGTCGCAGATCTTCGAAAAAGTTTGAACACCATAGACTCTTCATGTGATGAGATTCG AAGTTCTCTCAAGTTAAAAGAAATCATGAAGAAAATTCTCCTCCTTGGGAATACATTGAA CCAGGGTACTGCTAGAGGTGCTGCAGTTGGCTTCCGGTTGGACAGTCTTCTAAAACTAAC AGATACCCGAGCAACAAATAATAAAATGACACTTATGCACTACCTCTGCAAGGTACTTGC TGCAAAATCATCACAGCTTCTGGACTTCTACA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)