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Oryza sativa
cluster # 5681 cluster # 5681       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5681#0 length = 819 sequences # 1  
consensus_5681#1 length = 794 sequences # 2  

consensusID : consensus_5681#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 819
fasta sequence
                              [CCCTCCTGTTAAAGGTGAAGATTACATTTTGTATTGCCATCCAGAGATTCAGAAGACACCAAAGTCTGATAAACTGCGTCAGTGGTACTTATCTATGCTTCAAAAGGCTATTAAGGAGAACATTGTTGTCGAGTTGACAAATCTCTATGATCAATTTTTTGTCACTGCAAAAGAATGCAAGATAAAAGTATCTGCAGCTCGCTTGCCATATTTTGATGGAGATTATTGGCCAGGAGCTGCAGAAGATATTATCAACCAACTTCAACTAGAGGGTGATGGTAAGCTGCTGAAGAAGGGGAGAGTAAATAAAATTATCACAAAACGAGCTTTAAAAGCTGCCGGCCACACTGATCTAAGTGGGAATGCTTCAAAAGAGGCTATGCTGATGCAAAAACTTGGAGAAATCATTTGCCCAATTAAGGATGATCTCATCATGGTCCATTTGCAGTATTCGTGCAGTCACTGTTGTACCTTTATGGTGTCTGGAAGACGCTGGGTCTGCAATGAATGCAAAAGTTTTTATATTTGTGACAGGTGTTATAATGCAGAGCAGCGGCTTGAGGAGAAGGAGAGGCACCCAAGTAATAGTAAATGTTTGCATATACTCCACCCAGTTGAAATTGTTGGGGTCTCTGAAGATACCAAGGACAGAGATATTATCTTAGAAAATGAGATCTTTGACACCAGACAGGCATTCCTGAGTTTTTGTCAAGGGTATCATTATCAATATGACACCCTCCGCCGTGCAAAGCATTCCACCATGATGATGCTATACCACCTTCATAATCCAACTGGACCAGCTTTTGTTGCCACATGTAA]

[+] EMBL CB677581             [CCCTCCTGTTAAAGGTGAAGATTACATTTTGTATTGCCATCCAGAGATTCAGAAGACACCAAAGTCTGATAAACTGCGTCAGTGGTACTTATCTATGCTTCAAAAGGCTATTAAGGAGAACATTGTTGTCGAGTTGACAAATCTCTATGATCAATTTTTTGTCACTGCAAAAGAATGCAAGATAAAAGTATCTGCAGCTCGCTTGCCATATTTTGATGGAGATTATTGGCCAGGAGCTGCAGAAGATATTATCAACCAACTTCAACTAGAGGGTGATGGTAAGCTGCTGAAGAAGGGGAGAGTAAATAAAATTATCACAAAACGAGCTTTAAAAGCTGCCGGCCACACTGATCTAAGTGGGAATGCTTCAAAAGAGGCTATGCTGATGCAAAAACTTGGAGAAATCATTTGCCCAATTAAGGATGATCTCATCATGGTCCATTTGCAGTATTCGTGCAGTCACTGTTGTACCTTTATGGTGTCTGGAAGACGCTGGGTCTGCAATGAATGCAAAAGTTTTTATATTTGTGACAGGTGTTATAATGCAGAGCAGCGGCTTGAGGAGAAGGAGAGGCACCCAAGTAATAGTAAATGTTTGCATATACTCCACCCAGTTGAAATTGTTGGGGTCTCTGAAGATACCAAGGACAGAGATATTATCTTAGAAAATGAGATCTTTGACACCAGACAGGCATTCCTGAGTTTTTGTCAAGGGTATCATTATCAATATGACACCCTCCGCCGTGCAAAGCATTCCACCATGATGATGCTATACCACCTTCATAATCCAACTGGACCAGCTTTTGTTGCCACATGTAA]


>consensus_5681#0 CCCTCCTGTTAAAGGTGAAGATTACATTTTGTATTGCCATCCAGAGATTCAGAAGACACC AAAGTCTGATAAACTGCGTCAGTGGTACTTATCTATGCTTCAAAAGGCTATTAAGGAGAA CATTGTTGTCGAGTTGACAAATCTCTATGATCAATTTTTTGTCACTGCAAAAGAATGCAA GATAAAAGTATCTGCAGCTCGCTTGCCATATTTTGATGGAGATTATTGGCCAGGAGCTGC AGAAGATATTATCAACCAACTTCAACTAGAGGGTGATGGTAAGCTGCTGAAGAAGGGGAG AGTAAATAAAATTATCACAAAACGAGCTTTAAAAGCTGCCGGCCACACTGATCTAAGTGG GAATGCTTCAAAAGAGGCTATGCTGATGCAAAAACTTGGAGAAATCATTTGCCCAATTAA GGATGATCTCATCATGGTCCATTTGCAGTATTCGTGCAGTCACTGTTGTACCTTTATGGT GTCTGGAAGACGCTGGGTCTGCAATGAATGCAAAAGTTTTTATATTTGTGACAGGTGTTA TAATGCAGAGCAGCGGCTTGAGGAGAAGGAGAGGCACCCAAGTAATAGTAAATGTTTGCA TATACTCCACCCAGTTGAAATTGTTGGGGTCTCTGAAGATACCAAGGACAGAGATATTAT CTTAGAAAATGAGATCTTTGACACCAGACAGGCATTCCTGAGTTTTTGTCAAGGGTATCA TTATCAATATGACACCCTCCGCCGTGCAAAGCATTCCACCATGATGATGCTATACCACCT TCATAATCCAACTGGACCAGCTTTTGTTGCCACATGTAA



consensusID : consensus_5681#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 794
fasta sequence
                              [CAGGAGAGGAAAAGCATTGAGGAGGTTCCTGGAGCCGAAGGTCTTGTGGTTAGAGTTGTTTCATCAGTGGACAAGAAGCTGGAAGTAAAACCACGTTTTTTGGAAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGAATGTATGTTCAAGAATTTGGTGCAGAATGCTCCTACCCGAACCAGCGTCGTGTTTATTTGTCATACCTGGATTCTGTTAAATACTTCAGGCCTGAGATTAGAACGGTGTCTGGAGAGGCGTTACGTACATTTGTTTATCATGAAATTCTGATAGGATATCTTGAATATTGCAAGCAGCGTGGATTCACAAGCTGTTACATATGGGCGTGCCCACCTTTAAAAGGTGAAGATTACATTTTGTACTGCCATCCTGAGATTCAGAAGACTCCAAAATCCGACAAATTGAGGGAGTGGTACTTATCTATGCTTCGAAAAGCTACCAAGGAGGAGATTGTTGTTGAGCTGACAAATCTATATGACCATTTCTTCATTACTATGGGGGAGTGCAAGGCTAAAGTGACTGCTTCTCGTTTGCCTTACTTTGATGGAGATTATTGGCCAGGAGCTGCAGAAGATATGATCAATCAACTTCGTCAAGAAGAAGATGACCGGAAGCAGCAGAAGAAGGGCAAGACAAAGAAGATTATTACAAAAAGAGCTCTTAAAGCTGCTGGCCACACCGATCTCAGTGGGAATGCTTCCAAGGATGC]

[+] EMBL CB627754             [CAGGAGAGGAAAAGCATTGAGGAGGTTCCTGGAGCCGAAGGTCTTGTGGTTAGAGTTGTTTCATCAGTGGACAAGAAGCTGGAAGTAAAACCACGTTTTTTGGAAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGAATGTATGTTCAAGAATTTGGTGCAGAATGCTCCTACCCGAACCAGCGTCGTGTTTATTTGTCATACCTGGATTCTGTTAAATACTTCAGGCCTGAGATTAGAACGGTGTCTGGAGAGGCGTTACGTACATTTGTTTATCATGAAATTCTGATAGGATATCTTGAATATTGCAAGCAGCGTGGATTCACAAGCTGTTACATATGGGCGTGCCCACCTTTAAAAGGTGAAGATTACATTTTGTACTGCCATCCTGAGATTCAGAAGACTCCAAAATCCGACAAATTGAGGGAGTGGTACTTATCTATGCTTCGAAAAGCTACCAAGGAGGAGATTGTTGTTGAGCTGACAAATCTATATGACCATTTCTTCATTACTATGGGGGAGTGCAAGGCTAAAGTGACTGCTTCTCGTTTGCCTTACTTTGATGGAGATTATTGGCCAGGAGCTGCAGAAGATATGATCAATCAACTTCGTCAAGAAGAAGATGACCGGAAGCAGCAGAAGAAGGGCAAGACAAAGAAGATTATTACAAAAAGAGCTCTTAAAGCTGCTGGCCACACCGATCTCAGTGGGAATGCTTCCAAGGATGC]
[+] EMBL CB640255             [                  GAGGAGGTTCCTGGAGCCGAAGGTCTTGTGGTTAGAGTTGTTTCATCAGTGGACAAGAAGCTGGAAGTAAAACCACGTTTTTTGGAAATTTTTCAAGAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGAATGTATGTTCAAGAATTTGGTGCAGAATGCTCCTACCCGAACCAGCGTCGTGTTTATTTGTCATACCTGGATTCTGTTAAATACTTCAGGCCTGAGATTAGAACGGTGTCTGGAGAGGCGTTACGTACATTTGTTTATCATGAAATTCTGATAGGATATCTTGAATATTGCAAGCAGCGTGGATTCACAAGCTGTTACATATGGGCGTGCCCACCTTTAAAAGGTGAAGATTACATTTTGTACTGCCATCCTGAGATTCAGAAGACTCCAAAATCCGACAAATTGAGGGAGTGGTACTTATCTATGCTTCGAAAAGCTACCAAGGAGGAGATTGT                                                                                                                                                                                                                                                               ]


>consensus_5681#1 CAGGAGAGGAAAAGCATTGAGGAGGTTCCTGGAGCCGAAGGTCTTGTGGTTAGAGTTGTT TCATCAGTGGACAAGAAGCTGGAAGTAAAACCACGTTTTTTGGAAATTTTTCAAGAAGAT AACTACCCGACAGAGTTCCCATACAAGTCCAAGGCTGTCCTTTTGTTCCAGAAAATAGAA GGTGTAGAAGTGTGCCTATTTGGAATGTATGTTCAAGAATTTGGTGCAGAATGCTCCTAC CCGAACCAGCGTCGTGTTTATTTGTCATACCTGGATTCTGTTAAATACTTCAGGCCTGAG ATTAGAACGGTGTCTGGAGAGGCGTTACGTACATTTGTTTATCATGAAATTCTGATAGGA TATCTTGAATATTGCAAGCAGCGTGGATTCACAAGCTGTTACATATGGGCGTGCCCACCT TTAAAAGGTGAAGATTACATTTTGTACTGCCATCCTGAGATTCAGAAGACTCCAAAATCC GACAAATTGAGGGAGTGGTACTTATCTATGCTTCGAAAAGCTACCAAGGAGGAGATTGTT GTTGAGCTGACAAATCTATATGACCATTTCTTCATTACTATGGGGGAGTGCAAGGCTAAA GTGACTGCTTCTCGTTTGCCTTACTTTGATGGAGATTATTGGCCAGGAGCTGCAGAAGAT ATGATCAATCAACTTCGTCAAGAAGAAGATGACCGGAAGCAGCAGAAGAAGGGCAAGACA AAGAAGATTATTACAAAAAGAGCTCTTAAAGCTGCTGGCCACACCGATCTCAGTGGGAAT GCTTCCAAGGATGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5681#0      CCCTCCTGTTAAAGGTGAAGATTACATTTTGTATTGCCATCCAGAGATTCAGAAGACACC 60
consensus_5681#1      ------CAGGAGAGGAAAAGCATTGAGGAGGTTCCTGGAGCCGAAGGTCTTGTGGTTAGA 54
                                * ***  ***  *  *    **      * **  ** *   *  *  *  

consensus_5681#0      AAAGTCTGATAAACTGC------GTCAGTGGTACTTATCTATGCTTCAAAAGGCTATTAA 114
consensus_5681#1      GTTGTTTCATCAGTGGACAAGAAGCTGGAAGTAAAACCACGTTTTTTGGAAATTTTTCAA 114
                         ** * ** *   *       *   *  ***        *  **   **   * * **

consensus_5681#0      GGAGAACATTGTT--GTCGAGTTGACAAATC--TCTATGATCAATTTTTTGTCACTGCAA 170
consensus_5681#1      GAAGATAACTACCCGACAGAGTTCCCATACAAGTCCAAGGCTGTCCTTTTGTTCCAGAAA 174
                      * ***  * *        *****  ** *    ** * *       ******  * * **

consensus_5681#0      A-AGAATGCA---AGATAAAAGTATCTGCAGCTCGCTTGCCATATTTTGATGGAGATTAT 226
consensus_5681#1      ATAGAAGGTGTAGAAGTGTGCCTATTTGGAATGTATGTTCAAGAATTTGGTGCAGAATGC 234
                      * **** *     *  *     *** ** *       * * * * **** ** *** *  

consensus_5681#0      TG--GCCAGGAGCTGCAGAAGATAT---TATCAA--CCAACTTCAACTAGA--------G 271
consensus_5681#1      TCCTACCCGAACCAGCGTCGTGTTTATTTGTCATACCTGGATTCTGTTAAATACTTCAGG 294
                      *    ** * * * **      * *   * ***   *    ***   ** *        *

consensus_5681#0      GGTGATGGTAAGCTG----CTGAAGAAGGGGAGAGTAAATAAAATTATCACAAAACGAGC 327
consensus_5681#1      CCTGAGATTAGAACGGTGTCTGGAGAGGCGTTACGTACATTTGTTTATCATGAAAT---T 351
                        ***   **    *    *** *** * *    *** **    ******  ***     

consensus_5681#0      TTTAAAAGCTGCCGGCCACACTGATCTAAGTGGGAATGCTTCAAAAGAGGCTA--TGCTG 385
consensus_5681#1      CTGATAGGATATCTTGAATATTG---CAAGCAGCGTGGATTCACAAGCTGTTACATATGG 408
                       * * * * *  *    * * **    ***  *    * **** ***  * **  *   *

consensus_5681#0      ATGCAAAAACTTGGAGAAATCATTTGCCCAATTAAGGATGATCTCATCATGGTCCATTTG 445
consensus_5681#1      GCGTGCCCACCTTTAAAAGGTGAAGATTACATTTTGTAC--TGCCATCCTGAG--ATTCA 464
                        *     ** *  * **            ***  * *   *  **** **    ***  

consensus_5681#0      CAGTATTCGTGCAGTCACTGTTGTACCTTTATGGTGTCTGGAAGACGCTGGGTCTGCAAT 505
consensus_5681#1      GAAGACTCCAAAATCCGACAAATTGAGGGAGTGGTACTTATCTATGCTTCGAAAAGCTAC 524
                       *  * **    *  *       *       ****   *         * *    ** * 

consensus_5681#0      GAATGCAAAAGTTTTTATATTTGTGACAGGTGTTATAATGCAGAGCAGCGGCTTGAGGAG 565
consensus_5681#1      CAAGGAGGAGATTGTTGTTGAGCTGACAAAT------CTATATGACCATTTCTTCATTAC 578
                       ** *   *  ** ** *     *****  *       *  *   *     *** *  * 

consensus_5681#0      AAGGAGAGGCACCCAAGTAATAGTAAATGTTTG-CATATACTCCACCCAGTTGAA-ATTG 623
consensus_5681#1      TATGGGGGAGTGCAAGGCTAAAGTGACTGCTTCTCGTTTGCCTTACTTTGATGGAGATTA 638
                       * * * *    * * *  * *** * ** **  * * * *   **   * ** * *** 

consensus_5681#0      TTGGGGTCTCTGAAGATACCAAGGACA-GAGATATTATCTTAGAAAATGAGATCTTTGAC 682
consensus_5681#1      TTGG----CCAGGAGCTGCAGAAGATATGATCAATCAACTTCGTCAAGAAGAAGAT-GAC 693
                      ****     * * ** * *  * ** * **   ** * *** *  **  ***   * ***

consensus_5681#0      ACCAGACAGGCATTCCTGAGTTTTTGTCAAGGGTATCATTATCAATATGACACCCTCCGC 742
consensus_5681#1      CGGAAGCAG-CAGAAGAAGGGCAAGACAAAGAAGATTATTACAAAAAGAGCTCTTAAAGC 752
                         *  *** **       *        ***   ** ****  ** *   * *     **

consensus_5681#0      CGT--GCAAAGCATTCCACCATGATGATGCTATACCACCTTCATAATCCAACTGGACCAG 800
consensus_5681#1      TGCTGGCCACACCGATCTCAGTGGGAATGCTTCCAAGGATGC------------------ 794
                       *   ** *  *    * *  **   *****        * *                  

consensus_5681#0      CTTTTGTTGCCACATGTAA 819
consensus_5681#1      -------------------
                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)