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Oryza sativa
cluster # 5685 cluster # 5685       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5685#0 length = 1279 sequences # 3  

consensusID : consensus_5685#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1279
fasta sequence
                              [AAAGTTGCTTCAATAATATTTTGCTCAGCGACCAGGGACACTCGCTGACCGTCGGCATCGTGCAGCCGCGCAAGCTCATCGTGGACACCGGCAGCGACCTCATCTGGACGCAGTGCAAGCTGTCCTCCTCCACCGCCGCGGCGGCGAGGCACGGCTCGCCGCCGGTCTACGACCCCGGCGAGTCCTCCACTTTCGCCTTCCTCCCCTGCAGCGACAGGCTGTGCCAGGAGGGGCAGTTCAGCTTCAAGAACTGCACCAGCAAGAACAGGTGCGTCTACGAGGACGTGTACGGCAGCGCGGCGGCCGTCGGCGTCCTCGCGTCGGAGACCTTCACCTTCGGCGCGCGCCGCGCCGTCTCCCTCCGCCTCGGCTTCGGCTGCGGCGCGCTCTCCGCCGGAAGCCTCATCGGCGCCACCGGCATCCTGGGGCTTAGCCCGGAGAGCTTGTCCCTCATCACGCAGCTGAAAATACAGAGATTCTCCTACTGCCTCACCCCTTTCGCCGACAAGAAGACGAGCCCGTTGCTGTTCGGCGCAATGGCCGACCTGTCCAGGCACAAGACGACGAGGCCGATCCAAACCACCGCGATAGTGAGCAATCCGGTGGAGACCGTCTACTACTACGTGCCGCTGGTTGGCATCTCGCTCGGGCACAAGCGGCTCGCCGTGCCGGCGGCGAGCCTCGCAATGAGGCCCGACGGCGGCGGCGGCACGATCGTCGGCTCTGGCAGCACGGTGGCGTACCTCGTGGAGGCGGCGTTCGAGGCCGTCAAGGAGGCCGTGATGGACGTGGTGAGGCTGCCGGTGGCGAACCGGACCGTCGAGGACTACGAGCTCTGCTTCGTGCTGCCGCGCCGCACGGCTGCGGCGGCGATGGAGGCGGTGCAGGTTCCGCCGCTGGTGCTGCACTTCGACGGCGGCGCGGCGATGGTGCTGCCGCGGGACAACTACTTCCAGGAGCCGAGAGCCGGGCTGATGTGCCTGGCCGTGGGCAAGACGACGGACGGCTCCGGCGTGTCCATCATCGGCAACGTCCAGCAGCAGAACATGCACGTACTCTTCGATGTGCAACACCACAAGTTCTCCTTTGCGCCCACGCAGTGTGATCAAATCTGAAACACTCTTACTACTAACACAGTTGTTCTTACAATTTTCCCTTTTATTTTTCCCTGAAAATGTTATTAGCCTTCCGGATTAAGATATCCAATAATAAAAAGGATTCATCGATCAAGTATTGACGTTTCGAAACGACAAAAGAGAATAAGAGGAAATGCACCACA]

[+] EMBL AK108789             [AAAGTTGCTTCAATAATATTTTGCTCAGCGACCAGGGACACTCGCTGACCGTCGGCATCGTGCAGCCGCGCAAGCTCATCGTGGACACCGGCAGCGACCTCATCTGGACGCAGTGCAAGCTGTCCTCCTCCACCGCCGCGGCGGCGAGGCACGGCTCGCCGCCGGTCTACGACCCCGGCGAGTCCTCCACTTTCGCCTTCCTCCCCTGCAGCGACAGGCTGTGCCAGGAGGGGCAGTTCAGCTTCAAGAACTGCACCAGCAAGAACAGGTGCGTCTACGAGGACGTGTACGGCAGCGCGGCGGCCGTCGGCGTCCTCGCGTCGGAGACCTTCACCTTCGGCGCGCGCCGCGCCGTCTCCCTCCGCCTCGGCTTCGGCTGCGGCGCGCTCTCCGCCGGAAGCCTCATCGGCGCCACCGGCATCCTGGGGCTTAGCCCGGAGAGCTTGTCCCTCATCACGCAGCTGAAAATACAGAGATTCTCCTACTGCCTCACCCCTTTCGCCGACAAGAAGACGAGCCCGTTGCTGTTCGGCGCAATGGCCGACCTGTCCAGGCACAAGACGACGAGGCCGATCCAAACCACCGCGATAGTGAGCAATCCGGTGGAGACCGTCTACTACTACGTGCCGCTGGTTGGCATCTCGCTCGGGCACAAGCGGCTCGCCGTGCCGGCGGCGAGCCTCGCAATGAGGCCCGACGGCGGCGGCGGCACGATCGTCGGCTCTGGCAGCACGGTGGCGTACCTCGTGGAGGCGGCGTTCGAGGCCGTCAAGGAGGCCGTGATGGACGTGGTGAGGCTGCCGGTGGCGAACCGGACCGTCGAGGACTACGAGCTCTGCTTCGTGCTGCCGCGCCGCACGGCTGCGGCGGCGATGGAGGCGGTGCAGGTTCCGCCGCTGGTGCTGCACTTCGACGGCGGCGCGGCGATGGTGCTGCCGCGGGACAACTACTTCCAGGAGCCGAGAGCCGGGCTGATGTGCCTGGCCGTGGGCAAGACGACGGACGGCTCCGGCGTGTCCATCATCGGCAACGTCCAGCAGCAGAACATGCACGTACTCTTCGATGTGCAACACCACAAGTTCTCCTTTGCGCCCACGCAGTGTGATCAAATCTGAAACACTCTTACTACTAACACAGTTGTTCTTACAATTTTCCCTTTTATTTTTCCCTGAAAATGTTATTAGCCTTCCGGATTAAGATATCCAATAATAAAAAGGATTCATCGATCAAGTATTGACGTTTCGAAACGACAAAAGAGAATAAGAGGAAATGCACCACA]
[+] EMBL CB652507             [                            CGACCAGCGACACTCGCTGACCGTCGGCATCGTGCAGCCGCGCAAGCTCATCGTGGACACCGGCAGCGACCTCATCTGGACGCAGTGCAAGCTGTCCTCCTCCACCGCCGCGGCGGCGAGGCACGGCTCGCCGCCGGTCTACGACCCCGGCGAGTCCTCCACTTTCGCCTTCCTCCCCTGCAGCGACAGGCTGTGCCAGGAGGGGCAGTTCAGCTTCAAGAACTGCACCAGCAAGAACAGGTGCGTCTACGAGGACGTGTACGGCAGCGCGGCGGCCGTCGGCGTCCTCGCGTCGGAGACCTTCTCCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB652508             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GAAAATACAGAGATTCTCCTACTGCCTCACCCCTTTCGCCGACAAGAAGACGAGCCCGTTGCTGTTCGGCGCAATGGCCGACCTGTCCAGGCACAAGACGACGAGGCCGATCCAAACCACCGCGATAGTGAGCAATCCGGTGGAGACCGTCTACTACTACGTGCCGCTGGTTGGCATCTCGCTCGGGCACAAGCGGCTCGCCGTGCCGGCGGCGAGCCTCGCAATGAGGCCCGACGGCGGCGGCGGCACGATCGTCGACTCTGGCAGCACGGTGGCGTACCTCGTGGAGGCGGCGTTCGAGGCCGTCAAGGAGGCCGTGATGGACGTGGTGAGGCTGCCGGTGGCGAACCGGACCGTCGAGGACTACGAGCTCTGCTTCGTGCTGCCGCGCCGCACGGCTGCGGCGGCGATGGAGGCGGTGCAGGTTCCGCCGCTGGTGCTGCACTTCGACGGCGGCGCGGCGATGGTGCTGCCGCGGGACAACTACTTCCAGGAGCCGAGAGCCGGGCTGATGTGCCTGGCCGTGGGCAAGACGACGGACGGCTCCGGCGTGTCCATCATCGGCAACGTCCAGCAGCAGAACATGCACGTACTCTTCGATGTGCAACACCACAAGTTCTCCTTTGCGCCCACGCAGTGTGATCAAATCTGAAACACTCTTACTACTAACACAGTTGTTCTTACAATTTTCCCTTTTATTTTTCCCTGAAAATGTTATTAGCCTTCCGGATTAAAATATCCAATAAGAAAAAGGATTCATCGATCAAGTATTGACGTTTC                                    ]


>consensus_5685#0 AAAGTTGCTTCAATAATATTTTGCTCAGCGACCAGGGACACTCGCTGACCGTCGGCATCG TGCAGCCGCGCAAGCTCATCGTGGACACCGGCAGCGACCTCATCTGGACGCAGTGCAAGC TGTCCTCCTCCACCGCCGCGGCGGCGAGGCACGGCTCGCCGCCGGTCTACGACCCCGGCG AGTCCTCCACTTTCGCCTTCCTCCCCTGCAGCGACAGGCTGTGCCAGGAGGGGCAGTTCA GCTTCAAGAACTGCACCAGCAAGAACAGGTGCGTCTACGAGGACGTGTACGGCAGCGCGG CGGCCGTCGGCGTCCTCGCGTCGGAGACCTTCACCTTCGGCGCGCGCCGCGCCGTCTCCC TCCGCCTCGGCTTCGGCTGCGGCGCGCTCTCCGCCGGAAGCCTCATCGGCGCCACCGGCA TCCTGGGGCTTAGCCCGGAGAGCTTGTCCCTCATCACGCAGCTGAAAATACAGAGATTCT CCTACTGCCTCACCCCTTTCGCCGACAAGAAGACGAGCCCGTTGCTGTTCGGCGCAATGG CCGACCTGTCCAGGCACAAGACGACGAGGCCGATCCAAACCACCGCGATAGTGAGCAATC CGGTGGAGACCGTCTACTACTACGTGCCGCTGGTTGGCATCTCGCTCGGGCACAAGCGGC TCGCCGTGCCGGCGGCGAGCCTCGCAATGAGGCCCGACGGCGGCGGCGGCACGATCGTCG GCTCTGGCAGCACGGTGGCGTACCTCGTGGAGGCGGCGTTCGAGGCCGTCAAGGAGGCCG TGATGGACGTGGTGAGGCTGCCGGTGGCGAACCGGACCGTCGAGGACTACGAGCTCTGCT TCGTGCTGCCGCGCCGCACGGCTGCGGCGGCGATGGAGGCGGTGCAGGTTCCGCCGCTGG TGCTGCACTTCGACGGCGGCGCGGCGATGGTGCTGCCGCGGGACAACTACTTCCAGGAGC CGAGAGCCGGGCTGATGTGCCTGGCCGTGGGCAAGACGACGGACGGCTCCGGCGTGTCCA TCATCGGCAACGTCCAGCAGCAGAACATGCACGTACTCTTCGATGTGCAACACCACAAGT TCTCCTTTGCGCCCACGCAGTGTGATCAAATCTGAAACACTCTTACTACTAACACAGTTG TTCTTACAATTTTCCCTTTTATTTTTCCCTGAAAATGTTATTAGCCTTCCGGATTAAGAT ATCCAATAATAAAAAGGATTCATCGATCAAGTATTGACGTTTCGAAACGACAAAAGAGAA TAAGAGGAAATGCACCACA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)