These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5688#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 452 fasta sequence [CNCAGGAAGTCNACTGCCAGGATCTTCCTNGCCNGCGTGCCCCCACAGGCCACCTTTCCACGTGTTACAATTTATACACCGTCCGATGCATGATGCGCATCACTGATCCCCGTGGTGGGTGGGGAGGGAGTTTAGGAGGTGAGGTTTGGAACGAGATAATGTTCATAAAAAAAGAAGTTAAGAATAAAACGATAAGAAAATAACCTTGTGTAGTTGGGTCACTGGGTGATTAGCTGGTGGACACTGACAATCAGGATCCACTTGTTCAGAGTGATTAATACTCCTCTGTTATGTGTATTTAAGGAGAAAAATAAAAAAATATAAATTGCCAGTGTACAAGTAGAACTGTACTAGAGTGACGCATGTATTTATCTTGGAAGTTAGGAGTATCTTGGAAGCAATTTGTTTGTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU088736 [CNCAGGAAGTCNACTGCCAGGATCTTCCTNGCCNGCGTGCCCCCACAGGCCACCTTTCCACGTGTTACAATTTATACACCGTCCGATGCATGATGCGCATCACTGATCCCCGTGGTGGGTGGGGAGGGAGTTTAGGAGGTGAGGTTTGGAACGAGATAATGTTCATAAAAAAAGAAGTTAAGAATAAAACGATAAGAAAATAACCTTGTGTAGTTGGGTCACTGGGTGATTAGCTGGTGGACACTGACAATCAGGATCCACTTGTTCAGAGTGATTAATACTCCTCTGTTATGTGTATTTAAGGAGAAAAATAAAAAAATATAAATTGCCAGTGTACAAGTAGAACTGTACTAGAGTGACGCATGTATTTATCTTGGAAGTTAGGAGTATCTTGGAAGCAATTTGTTTGTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU097527 [ TCAGAGTGATTAATACCCCNCTGTTATGTGTATTTAAGGAGNAAAATNAAAAAATATAAATTGCCNGTGTACAAGTAGAACTGTACTAGAGTGACNCATGTNTTTATCTTGGAAGTTAGGAGTATCTTGGAANCAATTTGTTTGTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_5688#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [CATGCGCGTATAGCGAGTGCCCGTCGGGATTCGCCGTGGCGGACGGCGAAGGGAAGGTGTACNCCGGAGGATGCCTGGAGTCCGCGGCGTATAATCCGACACTAGGCCCCGTGCAGGCGGCCATCATAGGGATGGTGGCCGCCGGGGGCGCGCCGCCGGAGACGTGGTGGCGGCGGCGCTCGTGGAGAAGGAAGCGGGGTTGGTGTCGCAGGAAGCGACGGCCAGGATCTTCCTGGCCGCTGTGGCCCCACAGGCCACTTCCACGTGTACAATTATACACCGTCCGATGCATGATGCGCATCACTGATCCCCGTGGTGGGTGGGGANGGAGTTGTAGGAGGTNAGGTTTGGGAACGAGATATGTTCATAAAAAAAGGAGTTAAGATAAACGATAAGAAATAAACTTGTGATAGTTGGGGTCANTGGGT] [+] EMBL AU070599 [CATGCGCGTATAGCGAGTGCCCGTCGGGATTCGCCGTGGCGGACGGCGAAGGGAAGGTGTACNCCGGAGGATGCCTGGAGTCCGCGGCGTATAATCCGACACTAGGCCCCGTGCAGGCGGCCATCATAGGGATGGTGGCCGCCGGGGGCGCGCCGCCGGAGACGTGGTGGCGGCGGCGCTCGTGGAGAAGGAAGCGGGGTTGGTGTCGCAGGAAGCGACGGCCAGGATCTTCCTGGCCGCTGTGGCCCCACAGGCCACTTCCACGTGTACAATTATACACCGTCCGATGCATGATGCGCATCACTGATCCCCGTGGTGGGTGGGGANGGAGTTGTAGGAGGTNAGGTTTGGGAACGAGATATGTTCATAAAAAAAGGAGTTAAGATAAACGATAAGAAATAAACTTGTGATAGTTGGGGTCANTGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5688#0 CNCAGGAAGTCNACTGCCAGGATCTTCCTNGCCNGCGTGCCCCCACAGGCCACCTTTCCA 60 consensus_5688#1 --------------------CATGCGCGTATAGCGAGTGCCCGT-CGGGATTCGCCGTGG 39 ** * * * ****** * ** * consensus_5688#0 CGTGTTACAATTTATACACCGTCCGATGCATGATGCGCATCACTGATCCCCGTGGTGGGT 120 consensus_5688#1 CGGACGGCGAAG-GGAAGGTGTACNCCGGAGGATGC------CTGGAGTCCGCGGCGTAT 92 ** * * * ** * * * ***** *** *** ** * * consensus_5688#0 GGGGAGGGAGTTTAGGAGGTG-AGGTTTGGAACGAGATAATGTTCATAAAAAAAGAAGTT 179 consensus_5688#1 AATCCGACACTAGGCCCCGTGCAGGCGGCCATCATAGGGATGGTGGCCGCCGGGGGCGCG 152 * * * *** *** * * *** * * * consensus_5688#0 AAGAATAAAACGATAAGAAAATAAC-CTTGTGTAGTTGGGTCACTGGGTGATTAGCTGGT 238 consensus_5688#1 CCGCCGGAGACGTGGTGGCGGCGGCGCTCGTGGAGAAGGAA-GCGGGGTTGGTGTC--GC 209 * * *** * * ** *** ** ** * **** * * * consensus_5688#0 GGACACTGACAATCAGGATCCACTTGTTCAGAGTGATTA-ATACTCCTCTGTTATGTGTA 297 consensus_5688#1 AGGAAGCGACGGCCAGGATCTTCCTGGCCGCTGTGGCCCCACAGGCCACTTCCACGTGTA 269 * * *** ******* * ** * *** * * ** ** * ***** consensus_5688#0 TTTAAGGAGAAAAATAAA---AAAATATAAATTGCCAGTGTACAAGTAGAACTGTACTAG 354 consensus_5688#1 CAATTATACACCGTCCGATGCATGATGCGCATCACTGATCCCCGTGGTGGGTGGGGANGG 329 * * * * ** ** * * * * * * * consensus_5688#0 AGTGACGCATGTATTTATCTTGGAAGTTAGGAGTATCTTGGAAGCAATTTGTTTGTCTTT 414 consensus_5688#1 AGTTGTAGGAG-GTNAGGTTTGGGAACGAGATATGTTCATAAAAAAAGGAGTTAAGATAA 388 *** * * **** * ** * * ** ** *** * consensus_5688#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- 452 consensus_5688#1 ACGATAAGAAATAAACTTGTGATAGTTGGGGTCANTGGGT 428 * * ** *** *** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||