|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5693#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2381 fasta sequence
[TGCTCCTCTTTTTTCTTCTTCTTCCTCCGCCACCACCCGACTCGGCGGCCTCTGCTCCTCCGCTCGTTCCTCTCCCGACGAGGGTGGGTGGGGTGGGGTGGGGTGGGGGTTCCTGGTCCTCCACAGTCCAGGGAGCTGAGCCGCGCCGCCGGCCGCAGCCTTATGACAGACAGGAATGGACCATTTGGTAGGCTCCCTGAACATCTCCTTGTAGAAATATTTATCCGGTTACCAACATGCGAATGGGTTCAAATATCATGTGTCAGCAAGCACTGGGCAAGCATATTTCAAGGAGAATGTATGTGGCAAACTGCTATTGCAAGGAACTGGCCATCAGCTGGTTTACGGAAACGCTGGCCTGGGCCAATTCCCAGAGGTTCTGCTAGAAGGTTAGTTTTGTAATCTGATGTTGCATATCTTCTCCATCATTTGATGGTGTTGGAAATTTTAAAGTTTTGCCAGAGTCTGTCTGACGCATGATTGCTTGCTGCTGTATTTGAGTATCCACTTTAAAACAAATACACAAATCTGAAACAAGATGAAAAAATCTCAGATATCAAATGGTTTGCATCAAGTTTATTACCTTACGTTCCTTTAGTAACATGCTTTACTAGATGCCTAGATCTACTTTAAGCAGCTGAGTTTGAAGCGGCATAAAGAGCTGTGTTCCGCTATGCATGCTCACTATCCCAAAATCTTAAGAATAGCTTCTCTCTTCGGATACGATCTTCCATCTGAACATTCAATAAAAAAAAGTATCTCTCGGACATTTATAGGAGATTCCAAGCATTATACGTCAGCCAGAACCTTGTCTCATCTGGTGGGGATATTGATGAACTTGTTGGCCACACTTATCTCTATTTGAAAGAACAGCTTGAGCGCCCAGTTGTTGCTCCTTCCAGCATACTCCATGGCACCATCATCGGTGAGGTTTTCTGTTCCAAGTTCCAACTAGTCCAAATATAGAGTTTATTGTAGTTCATGTGTTGGCGTGCTTTTTGTGTTGAGTGATCATTATGAAAATCTTTTCTCAAAGATAAAACACATGGGAAGGATACGATTAAACCATGTCAGGTACAGGAAATTTCGATAGCACATGTTTTGTGTCTGACATTACAGGAAGAAATGGTTGATCTTGTAGGATTGGTAACAATAGTATGAACTCGTGATTCAATTGCATGGCATGCTGAGTTACTGCAAGATTTATGTATGTTCTTACTTTTTTGAGAAAATTTTGTTCTCCAATAAAATGAAACCTGGGCAGATTCTCAAACAAATGAAGTTCCTATTTTTCCTAAGTGGATTCGCGTCTCAAAGAGGCCTTTAAAGCTGCTTCCGATCTAAAACTGATAACCATGGATTGAATTTTGTGGTACAATGAGACTCATTTTCAGCATCAAGAGTAGAGCTTCATCACTGAGTATTGCTTATACTGACGTTATTGGTTGCTCACACTGAATTTAACATTGCCTCACCCTTCTATGTACAGATCAGTTCATTGCTTGTGGTAGGACAGGAGAAAAGGCACATGAACTTGCTTCAAAGATATGGCTTGCAGTTATTGACAACTTGGAAGAAAACCAGCAAACTTTCTTGCTGTTAAAACACCTTTCTCAAGAAGGAGAAGTAAGTTCAGCGTCCCAATTTTATTTATGACCTGTGTACTCACATTTGACATGTCAATACAATGGACGTGTCATCCCTCCCTTTTCCGTAAGTTATCAAAAATATCTCTTGCGTGAAATGATGCATTTCATACTTCTTAGGGCCTGGCTAGGTGCATCTTCATAAAATAGCTATAGCTACTATGGTGCATTCTGCTGTTATTTCGTTACTAAATAAAAGTAAATAAAATGAATGTCATATTTGATATGCAACTGTGCAAAGTGCAACAACTTGCTGAAAACTGTTATATTTCGCTTTCTGCTTGCAGTTTTTCCTTCCATTCCCATACTCCAGATCATATAAAGTCTTGTGGAGGGTGTTCGACAAGCTGTTCACCGACTTCCGTGACTGCTTCAGCCGAGGGGATTACCATGATGCACTAGCGGGTGCCAAGTCTAGGTTTCAGCCAGTACCATCTGCATGGCTTGGCCACTGACGAGCAGTTGCTGCTCTTGTTGTGCACTGCACATTGCCTTTTAGATGTAGCAGCTATACTTTCTGAAATGCAAAACTGGACCGAAGGATGGTACTTCCATTCCAATGGATGATTTGTATATCTTTTAGTGTCTTAGCAACTTCAGAAACACCAAACTGTTGTCTGATCGAAAAATATATTCTCTTGTAAATTCTAAACATTCAGAATTACCCGACTTCTCCATTTTCGGCTTATGATGGAACTTATTATATGAACTCTTACCTATATCAAGTCAGATGTG]
[+] EMBL AK100566 [TGCTCCTCTTTTTTCTTCTTCTTCCTCCGCCACCACCCGACTCGGCGGCCTCTGCTCCTCCGCTCGTTCCTCTCCCGACGAGGGTGGGTGGGGTGGGGTGGGGTGGGGGTTCCTGGTCCTCCACAGTCCAGGGAGCTGAGCCGCGCCGCCGGCCGCAGCCTTATGACAGACAGGAATGGACCATTTGGTAGGCTCCCTGAACATCTCCTTGTAGAAATATTTATCCGGTTACCAACATGCGAATGGGTTCAAATATCATGTGTCAGCAAGCACTGGGCAAGCATATTTCAAGGAGAATGTATGTGGCAAACTGCTATTGCAAGGAACTGGCCATCAGCTGGTTTACGGAAACGCTGGCCTGGGCCAATTCCCAGAGGTTCTGCTAGAAGGTTAGTTTTGTAATCTGATGTTGCATATCTTCTCCATCATTTGATGGTGTTGGAAATTTTAAAGTTTTGCCAGAGTCTGTCTGACGCATGATTGCTTGCTGCTGTATTTGAGTATCCACTTTAAAACAAATACACAAATCTGAAACAAGATGAAAAAATCTCAGATATCAAATGGTTTGCATCAAGTTTATTACCTTACGTTCCTTTAGTAACATGCTTTACTAGATGCCTAGATCTACTTTAAGCAGCTGAGTTTGAAGCGGCATAAAGAGCTGTGTTCCGCTATGCATGCTCACTATCCCAAAATCTTAAGAATAGCTTCTCTCTTCGGATACGATCTTCCATCTGAACATTCAATAAAAAAAAGTATCTCTCGGACATTTATAGGAGATTCCAAGCATTATACGTCAGCCAGAACCTTGTCTCATCTGGTGGGGATATTGATGAACTTGTTGGCCACACTTATCTCTATTTGAAAGAACAGCTTGAGCGCCCAGTTGTTGCTCCTTCCAGCATACTCCATGGCACCATCATCGGTGAGGTTTTCTGTTCCAAGTTCCAACTAGTCCAAATATAGAGTTTATTGTAGTTCATGTGTTGGCGTGCTTTTTGTGTTGAGTGATCATTATGAAAATCTTTTCTCAAAGATAAAACACATGGGAAGGATACGATTAAACCATGTCAGGTACAGGAAATTTCGATAGCACATGTTTTGTGTCTGACATTACAGGAAGAAATGGTTGATCTTGTAGGATTGGTAACAATAGTATGAACTCGTGATTCAATTGCATGGCATGCTGAGTTACTGCAAGATTTATGTATGTTCTTACTTTTTTGAGAAAATTTTGTTCTCCAATAAAATGAAACCTGGGCAGATTCTCAAACAAATGAAGTTCCTATTTTTCCTAAGTGGATTCGCGTCTCAAAGAGGCCTTTAAAGCTGCTTCCGATCTAAAACTGATAACCATGGATTGAATTTTGTGGTACAATGAGACTCATTTTCAGCATCAAGAGTAGAGCTTCATCACTGAGTATTGCTTATACTGACGTTATTGGTTGCTCACACTGAATTTAACATTGCCTCACCCTTCTATGTACAGATCAGTTCATTGCTTGTGGTAGGACAGGAGAAAAGGCACATGAACTTGCTTCAAAGATATGGCTTGCAGTTATTGACAACTTGGAAGAAAACCAGCAAACTTTCTTGCTGTTAAAACACCTTTCTCAAGAAGGAGAAGTAAGTTCAGCGTCCCAATTTTATTTATGACCTGTGTACTCACATTTGACATGTCAATACAATGGACGTGTCATCCCTCCCTTTTCCGTAAGTTATCAAAAATATCTCTTGCGTGAAATGATGCATTTCATACTTCTTAGGGCCTGGCTAGGTGCATCTTCATAAAATAGCTATAGCTACTATGGTGCATTCTGCTGTTATTTCGTTACTAAATAAAAGTAAATAAAATGAATGTCATATTTGATATGCAACTGTGCAAAGTGCAACAACTTGCTGAAAACTGTTATATTTCGCTTTCTGCTTGCAGTTTTTCCTTCCATTCCCATACTCCAGATCATATAAAGTCTTGTGGAGGGTGTTCGACAAGCTGTTCACCGACTTCCGTGACTGCTTCAGCCGAGGGGATTACCATGATGCACTAGCGGGTGCCAAGTCTAGGTTTCAGCCAGTACCATCTGCATGGCTTGGCCACTGACGAGCAGTTGCTGCTCTTGTTGTGCACTGCACATTGCCTTTTAGATGTAGCAGCTATACTTTCTGAAATGCAAAACTGGACCGAAGGATGGTACTTCCATTCCAATGGATGATTTGTATATCTTTTAGTGTCTTAGCAACTTCAGAAACACCAAACTGTTGTCTGATCGAAAAATATATTCTCTTGTAAATTCTAAACATTCAGAATTACCCGACTTCTCCATTTTCGGCTTATGATGGAACTTATTATATGAACTCTTACCTATATCAAGTCAGATGTG]
[+] EMBL CA998104 [ cgaAGTATCCACTTTAAAACAAATACACAAATCTGAAACAAGATGAAAAAATCTCAGATATCAAATGGTTTGCATCAAGTTTATTACCTTACGTTCCTTTAGTAACATGCTTTACTAGATGCCTAGATCTACTTTAAGCAGCTGAGTTTGAAGCGGCATAAAGAGCTGTGTTCCGCTATGCATGCTCACTATCCCAAAATCTTAAGAATAGCTTCTCTCTTCGGATACGATCTTCCATCTGAACATTCAATAAAAAAAAGTATCTCTCGGACATTTATAGGAGATTCCAAGCATTATACGTCAGCCAGAACCTTGTCTCATCTGGTGGGGATATTGATGAACTTGTTGGCCACACTTATCTCTATTTGAAAGAACAGC ]
consensusID : consensus_5693#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence
[TTGGCNACACTTATCCCTATTTGAAAGANCAAGCTTGAGCNCCCAGTTGTTGCCCTTCCAGCATACTCCCATGGCACCATCATCGATCAGTTCATTGCTTGTGGTAGGACAGGAGAAAAGGCACATGAACTTGCTTCAAAGATATGGCTTGCAGTTATTGACAACTTGGAAGAAAACCAGCAAACTTTCTTGCTGTTAAAACACCTTTCTCAAGAAGGAGAATTTTTCCTTCCATTCCCATACTCCAGATCATATAAAGTCTTGTGGAGGGTGTTCGACAAGCTGTTCACCGACTTCCGTGACTGCTTCAGCCGAGGGGATTACCATGATGCACTAGCGGGTGCCAAGTCTAGGTTTCAGCCAGTACCATCTGCATGGCTTGGCCACTGACGAGCAGTTGCTGCTCTTGTTGTGCACTGCACATTGCCTTTTAGATGTAGCAGCTATACTTTCTGAAATGCAAAACTGGACCGAAGGATGGTACTTCCATTCCAATGGATGATTTGTATATCTTTTAGTGTCTTAGCAACTTCAGAAACACCAAACTGTTGTCTGATCGAAAAATATATTCTCTTGTAAATTCTAAACATTCAGAATTACCCGACTTCTCCATTTTCGGCTTATGATGGAACTTATTATATGAACTCTTACCTATATCAAGTCAGATGTGGGGTATTGGTACAAAAAAAAAAAAAAA]
[+] EMBL AU092274 [TTGGCNACACTTATCCCTATTTGAAAGANCAAGCTTGAGCNCCCAGTTGTTGCCCTTCCAGCATACTCCCATGGCACCATCATCGATCAGTTCATTGCTTGTGGTAGGACAGGAGAAAAGGCACATGAACTTGCTTCAAAGATATGGCTTGCAGTTATTGACAACTTGGAAGAAAACCAGCAAACTTTCTTGCTGTTAAAACACCTTTCTCAAGAAGGAGAATTTTTCCTTCCATTCCCATACTCCAGATCATATAAAGTCTTGTGGAGGGTGTTCGACAAGCTGTTCACCGACTTCCGTGACTGCTTCAGCCGAGGGGATTACCATGATGCACTAGCGGGTGCCAAGTCTAGGTTTCAGCCAGTACCATCTGCATGGCTTGGCCACTGACGAGCAGTTGCTGCTCTTGTTGTGCACTGCACATTGCCTTTTAGATGTAGCAGCTATACTTTCTGAAATGCAAAACTGGACCGAAGGATGGTACTTCCATTCCAATGGATGATTTGTATATCTTTTAGTGTCTTAGCAACTTCAGAAACACCAAACTGTTGTCTGATCGAAAAATATATTCTCTTGTAAATTCTAAACATTCAGAATTACCCGACTTCTCCATTTTCGGCTTATGATGGAACTTATTATATGAACTCTTACCTATATCAAGTCAGATGTGGGGTATTGGTACAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5693#0 TGCTCCTCTTTTTTCTTCTTCTTCCTCCGCCACCACCCGACTCGGCGGCCTCTGCTCCTC 60
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 CGCTCGTTCCTCTCCCGACGAGGGTGGGTGGGGTGGGGTGGGGTGGGGGTTCCTGGTCCT 120
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 CCACAGTCCAGGGAGCTGAGCCGCGCCGCCGGCCGCAGCCTTATGACAGACAGGAATGGA 180
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 CCATTTGGTAGGCTCCCTGAACATCTCCTTGTAGAAATATTTATCCGGTTACCAACATGC 240
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 GAATGGGTTCAAATATCATGTGTCAGCAAGCACTGGGCAAGCATATTTCAAGGAGAATGT 300
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 ATGTGGCAAACTGCTATTGCAAGGAACTGGCCATCAGCTGGTTTACGGAAACGCTGGCCT 360
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 GGGCCAATTCCCAGAGGTTCTGCTAGAAGGTTAGTTTTGTAATCTGATGTTGCATATCTT 420
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 CTCCATCATTTGATGGTGTTGGAAATTTTAAAGTTTTGCCAGAGTCTGTCTGACGCATGA 480
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 TTGCTTGCTGCTGTATTTGAGTATCCACTTTAAAACAAATACACAAATCTGAAACAAGAT 540
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 GAAAAAATCTCAGATATCAAATGGTTTGCATCAAGTTTATTACCTTACGTTCCTTTAGTA 600
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 ACATGCTTTACTAGATGCCTAGATCTACTTTAAGCAGCTGAGTTTGAAGCGGCATAAAGA 660
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 GCTGTGTTCCGCTATGCATGCTCACTATCCCAAAATCTTAAGAATAGCTTCTCTCTTCGG 720
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 ATACGATCTTCCATCTGAACATTCAATAAAAAAAAGTATCTCTCGGACATTTATAGGAGA 780
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 TTCCAAGCATTATACGTCAGCCAGAACCTTGTCTCATCTGGTGGGGATATTGATGAACTT 840
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 GTTGGCCACACTTATCTCTATTTGAAAGAACAGCTTGAGCGCCCAGTTGTTGCTCCTTCC 900
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 AGCATACTCCATGGCACCATCATCGGTGAGGTTTTCTGTTCCAAGTTCCAACTAGTCCAA 960
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 ATATAGAGTTTATTGTAGTTCATGTGTTGGCGTGCTTTTTGTGTTGAGTGATCATTATGA 1020
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 AAATCTTTTCTCAAAGATAAAACACATGGGAAGGATACGATTAAACCATGTCAGGTACAG 1080
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 GAAATTTCGATAGCACATGTTTTGTGTCTGACATTACAGGAAGAAATGGTTGATCTTGTA 1140
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 GGATTGGTAACAATAGTATGAACTCGTGATTCAATTGCATGGCATGCTGAGTTACTGCAA 1200
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 GATTTATGTATGTTCTTACTTTTTTGAGAAAATTTTGTTCTCCAATAAAATGAAACCTGG 1260
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 GCAGATTCTCAAACAAATGAAGTTCCTATTTTTCCTAAGTGGATTCGCGTCTCAAAGAGG 1320
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 CCTTTAAAGCTGCTTCCGATCTAAAACTGATAACCATGGATTGAATTTTGTGGTACAATG 1380
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 AGACTCATTTTCAGCATCAAGAGTAGAGCTTCATCACTGAGTATTGCTTATACTGACGTT 1440
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 ATTGGTTGCTCACACTGAATTTAACATTGCCTCACCCTTCTATGTACAGATCAGTTCATT 1500
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 GCTTGTGGTAGGACAGGAGAAAAGGCACATGAACTTGCTTCAAAGATATGGCTTGCAGTT 1560
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 ATTGACAACTTGGAAGAAAACCAGCAAACTTTCTTGCTGTTAAAACACCTTTCTCAAGAA 1620
consensus_5693#1 ------------------------------------------------------------
consensus_5693#0 GGAGAAGTAAGTTCAGCGTCCCAATTTTATTTATGACCTGTGTACTCACATTTGACATGT 1680
consensus_5693#1 -----------------------------TTGGCNAC--ACTTATCCCTATTTGAAAGAN 29
** ** ** * ****** *
consensus_5693#0 CAATACAATGGACGTGTCATCCCTCCCTTTTCCGTAAGTTATCAAAAATATCTCTTGCGT 1740
consensus_5693#1 CAAGCT--TGAGCNCCCAGTTGTTGCCCTTCCAGCATACTCCC----ATGGCACCATCAT 83
*** ** * * * ** ** * * * * * ** * * * *
consensus_5693#0 GAAATGATGCATTTCATACTTCTTAGGGCCTGGCTAGGTGCATCTTCATAAAATAGCTAT 1800
consensus_5693#1 CGATCAGTTCATTGCTTG--TGGTAGGACAGGAGAAAAGGCA----CATGAACTTGCTTC 137
* * **** * * * **** * * * *** *** ** * ***
consensus_5693#0 AGCTACTATGGTGCATTCTGCTGTTATTTCGTTACTAAATAAAAGTAAATAAAATGAATG 1860
consensus_5693#1 A------AAGATATGGCTTGCAGTTATT----GACAACTTGGAAGAAAACCAGCAAACTT 187
* * * * *** ****** ** * * *** *** * * *
consensus_5693#0 TCATATTTGATATGCAACTGTGCAAAGTGCAACAACTTGCTGAAAACTGTTATATTTCGC 1920
consensus_5693#1 TCTTG------------CTGT------TAAAACACCTTTCTCAAGAAGG----------- 218
** * **** * **** *** ** ** * *
consensus_5693#0 TTTCTGCTTGCAGTTTTTCCTTCCATTCCCATACTCCAGATCATATAAAGTCTTGTGGAG 1980
consensus_5693#1 ---------AGAATTTTTCCTTCCATTCCCATACTCCAGATCATATAAAGTCTTGTGGAG 269
* ***********************************************
consensus_5693#0 GGTGTTCGACAAGCTGTTCACCGACTTCCGTGACTGCTTCAGCCGAGGGGATTACCATGA 2040
consensus_5693#1 GGTGTTCGACAAGCTGTTCACCGACTTCCGTGACTGCTTCAGCCGAGGGGATTACCATGA 329
************************************************************
consensus_5693#0 TGCACTAGCGGGTGCCAAGTCTAGGTTTCAGCCAGTACCATCTGCATGGCTTGGCCACTG 2100
consensus_5693#1 TGCACTAGCGGGTGCCAAGTCTAGGTTTCAGCCAGTACCATCTGCATGGCTTGGCCACTG 389
************************************************************
consensus_5693#0 ACGAGCAGTTGCTGCTCTTGTTGTGCACTGCACATTGCCTTTTAGATGTAGCAGCTATAC 2160
consensus_5693#1 ACGAGCAGTTGCTGCTCTTGTTGTGCACTGCACATTGCCTTTTAGATGTAGCAGCTATAC 449
************************************************************
consensus_5693#0 TTTCTGAAATGCAAAACTGGACCGAAGGATGGTACTTCCATTCCAATGGATGATTTGTAT 2220
consensus_5693#1 TTTCTGAAATGCAAAACTGGACCGAAGGATGGTACTTCCATTCCAATGGATGATTTGTAT 509
************************************************************
consensus_5693#0 ATCTTTTAGTGTCTTAGCAACTTCAGAAACACCAAACTGTTGTCTGATCGAAAAATATAT 2280
consensus_5693#1 ATCTTTTAGTGTCTTAGCAACTTCAGAAACACCAAACTGTTGTCTGATCGAAAAATATAT 569
************************************************************
consensus_5693#0 TCTCTTGTAAATTCTAAACATTCAGAATTACCCGACTTCTCCATTTTCGGCTTATGATGG 2340
consensus_5693#1 TCTCTTGTAAATTCTAAACATTCAGAATTACCCGACTTCTCCATTTTCGGCTTATGATGG 629
************************************************************
consensus_5693#0 AACTTATTATATGAACTCTTACCTATATCAAGTCAGATGTG------------------- 2381
consensus_5693#1 AACTTATTATATGAACTCTTACCTATATCAAGTCAGATGTGGGGTATTGGTACAAAAAAA 689
*****************************************
consensus_5693#0 --------
consensus_5693#1 AAAAAAAA 697
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||