These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5698#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence [GTACCATATACTGGTTGTATCGCCGCACGAGTTTGCCCAATTGTTGATGAGAAAGTTCATGTAACGTGGGAAACTAAAAAACATTGGAGAACAGCGAATTCAACGAAGGGATCGAGTCTTTGAGTTGACTAGATTTTTTAGCGCTTGCCAACTTGTACACTCCAGATATACACGTCTGTGCTTGTAACATTCTTGAGATCTTAGACGCCCGCACCCTTACATTTGACTCGCCAGAGAAAGAGCGTAAAAGAACTGAAGAAAGATCAACGTAAAGCCAGTCTGTATTTTTGGGAGTCTGTAAAGCGTTAGGCGGCTATTTTTTGCTTTTAACTGATAGACATTTCGTTGTATTGTGCAATGTATTTTTGTGCCCAAACTGCAGGTTAACAAAAAAAAAA] [+] EMBL BI812770 [GTACCATATACTGGTTGTATCGCCGCACGAGTTTGCCCAATTGTTGATGAGAAAGTTCATGTAACGTGGGAAACTAAAAAACATTGGAGAACAGCGAATTCAACGAAGGGATCGAGTCTTTGAGTTGACTAGATTTTTTAGCGCTTGCCAACTTGTACACTCCAGATATACACGTCTGTGCTTGTAACATTCTTGAGATCTTAGACGCCCGCACCCTTACATTTGACTCGCCAGAGAAAGAGCGTAAAAGAACTGAAGAAAGATCAACGTAAAGCCAGTCTGTATTTTTGGGAGTCTGTAAAGCGTTAGGCGGCTATTTTTTGCTTTTAACTGATAGACATTTCGTTGTATTGTGCAATGTATTTTTGTGCCCAAACTGCAGGTTAACAAAAAAAAAA] consensusID : consensus_5698#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [GATGAGAAAGTTCACTTAACTTGGAAACCTATAAAAACCACTGGAGAAGCCACGCGAATTCACCGAAGGGATCGAGGCTTTGAGTTGAACTAGATGTTTTAGGCGCTTGGCAACTTGTACATCCACGATATACACACCGCTCTGTGCCTTGTAACATTCTTGAGATTCTTAGAAACCGGCCGCCACCCCTTACACTTTGACTGCAGAGAAAGAGCGTAAAAGAACTGAAGAAAGATCCAACGTAAAGGCAGTCTGTATTTTTGGGAGTCTGTAAAGCGTTAGGGCGGCTATTTTTTGCTTTTAACTGATAGACATTTCGTTGTATTGTGCAATGTATTTTTGTGCCCAAACTGCAGGTAACA] [+] EMBL BQ909205 [GATGAGAAAGTTCACTTAACTTGGAAACCTATAAAAACCACTGGAGAAGCCACGCGAATTCACCGAAGGGATCGAGGCTTTGAGTTGAACTAGATGTTTTAGGCGCTTGGCAACTTGTACATCCACGATATACACACCGCTCTGTGCCTTGTAACATTCTTGAGATTCTTAGAAACCGGCCGCCACCCCTTACACTTTGACTGCAGAGAAAGAGCGTAAAAGAACTGAAGAAAGATCCAACGTAAAGGCAGTCTGTATTTTTGGGAGTCTGTAAAGCGTTAGGGCGGCTATTTTTTGCTTTTAACTGATAGACATTTCGTTGTATTGTGCAATGTATTTTTGTGCCCAAACTGCAGGTAACA] consensusID : consensus_5698#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [TTCATTAAACTNTGAAAANCTCAAAAACATGNAGAAGCAGCGAATTCCCGANGGGANCGAGGCTTTGAGTTGACTAGATGTTTTAGGCGTTGGCAACTTGTACANCCAGATATACCCGTCTGTGCTTGTAACANTCTTGAGATCTTAGAAACGGCCGCACCCTTACATTTGACTGCAGAGNAAGAGCGTAAAAGAACTGAAGAAAGNTCAAACGTAAAGGCAGTCTGTATTTTTGGGAGTCTGTAAAGCGTTAGGGCGGCNNTTTTTTGCTTTTAACTGATAGACATTTCGTTGTATTGTGCAATGTATTTTTGTGGCCAAAACTGCAGGTTAAAAAAA] [+] EMBL AU068401 [TTCATTAAACTNTGAAAANCTCAAAAACATGNAGAAGCAGCGAATTCCCGANGGGANCGAGGCTTTGAGTTGACTAGATGTTTTAGGCGTTGGCAACTTGTACANCCAGATATACCCGTCTGTGCTTGTAACANTCTTGAGATCTTAGAAACGGCCGCACCCTTACATTTGACTGCAGAGNAAGAGCGTAAAAGAACTGAAGAAAGNTCAAACGTAAAGGCAGTCTGTATTTTTGGGAGTCTGTAAAGCGTTAGGGCGGCNNTTTTTTGCTTTTAACTGATAGACATTTCGTTGTATTGTGCAATGTATTTTTGTGGCCAAAACTGCAGGTTAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5698#1 ---------------------------------------------GATGAGAAAGTTCAC 15 consensus_5698#2 -------------------------------------------------------TTCAT 5 consensus_5698#0 GTACCATATACTGGTTGTATCGCCGCACGAGTTTGCCCAATTGTTGATGAGAAAGTTCAT 60 **** consensus_5698#1 TTAACTTGGAAACCTATAAAAACCACTGGAGAAGCCACGCGAATTCACCGAAGGGATCGA 75 consensus_5698#2 TAAACTNTGAAAANCTCAAAAACA--TGNAGAAGCA--GCGAATTC-CCGANGGGANCGA 60 consensus_5698#0 GTAACGTGGGAAACTA-AAAAACA-TTGGAGAA-CA--GCGAATTCAACGAAGGGATCGA 115 *** * ** ****** ** **** * ******** *** **** *** consensus_5698#1 GGCTTTGAGTTGAACTAGATGTTTTAGGCGCTTGGCAACTTGTACATCCACGATATACAC 135 consensus_5698#2 GGCTTTGAGTTGA-CTAGATGTTTTAGGCG-TTGGCAACTTGTACANCCA-GATATACCC 117 consensus_5698#0 GTCTTTGAGTTGA-CTAGATTTTTTAG-CGCTTGCCAACTTGTACACTCCAGATATACAC 173 * *********** ****** ****** ** *** *********** * ******* * consensus_5698#1 ACCGCTCTGTGCCTTGTAACATTCTTGAGATTCTTAGAAACCGGCCGCCACCCCTTACAC 195 consensus_5698#2 G----TCTGTGC-TTGTAACANTCTTGAGAT-CTTAGAAAC-GGCCGCA--CCCTTACA- 167 consensus_5698#0 G----TCTGTGC-TTGTAACATTCTTGAGAT-CTTAGACGC---CCGCA--CCCTTACA- 221 ******* ******** ********* ****** * **** ******** consensus_5698#1 TTTGACTG--CAGAGAAAGAGCGTAAAAGAACTGAAGAAAGATCCAACGTAAAGGCAGTC 253 consensus_5698#2 TTTGACTG--CAGAGNAAGAGCGTAAAAGAACTGAAGAAAGNTCAAACGTAAAGGCAGTC 225 consensus_5698#0 TTTGACTCGCCAGAGAAAGAGCGTAAAAGAACTGAAGAAAGATC-AACGTAAAGCCAGTC 280 ******* ***** ************************* ** ********* ***** consensus_5698#1 TGTATTTTTGGGAGTCTGTAAAGCGTTAGGGCGGCTATTTTTTGCTTTTAACTGATAGAC 313 consensus_5698#2 TGTATTTTTGGGAGTCTGTAAAGCGTTAGGGCGGCNNTTTTTTGCTTTTAACTGATAGAC 285 consensus_5698#0 TGTATTTTTGGGAGTCTGTAAAGCGTTAGG-CGGCTATTTTTTGCTTTTAACTGATAGAC 339 ****************************** **** *********************** consensus_5698#1 ATTTCGTTGTATTGTGCAATGTATTTTTGTG-CCCAAACTGCAGGTAACA---------- 362 consensus_5698#2 ATTTCGTTGTATTGTGCAATGTATTTTTGTGGCCAAAACTGCAGGTTAAAAAAA------ 339 consensus_5698#0 ATTTCGTTGTATTGTGCAATGTATTTTTGTG-CCCAAACTGCAGGTTAACAAAAAAAAAA 398 ******************************* ** *********** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||