These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5701#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 779 fasta sequence [TGTCTTTTTTATTTTTTTTAGCTCCAGTCTGCAAATAACATGAGACTATACTGACCATATAAAATTACAATGGTACCTCAATAGGCAGAATATCTGCATCTGACTTCGAATTCAAGGACCAAACACTACCGAAGTTCGCCTTTGATCACTTTAGATGCATACACATTTCACTTATCTATGAAAAACTAAAAACTAAAAGGGTTATCTAGGATATATGTCAGTAAGTGTGATCCCATTCGCAGAGATATCCTCTTCATAGATCTTACCAGACCGATCGTACACATAGACGCGCTGGTCAGATGTTTGAGAAGCTGAGTTCGAGTTTCCGTTGAAAAAAAATGCAGGCTCTGTTGGTGGCTGAAGCTCCATGTTATCCCTGGTCAGCATGAAAATGACTGATGGAATGTCCGGCCTGTCGTCAGGATCTGATTGGACACACAGCAGCCCAATGTGGATGCATCTTAGCGCCTGGTTTCGAAAGTGCCCTTCAAGTGATTGGTCAATTACCTGTGAAATCACACCTTCGGTCCAGTAACTCCATACATCACTTAGGAGATTCACTGTGTCAGTGGTGCCATCGCCATAGCTGCAGTTCTTTCTCTTGGTTACAATTTCAAGTACCAGCACGCCAAAGCTGAAAATGTCAATCTTTGGTGACACATTTCCATGTATTGCATACTCTGGTGCCATATATCCGTATGTTCCAACAATTCTAGTTGTCTTTGTGTGAGTATGACCTCCTCCTATCAGTCTTGCTAGTCCAAAGTCTGCAATTTTTG] [+] EMBL CB628016 [TGTCTTTTTTATTTTTTTTAGCTCCAGTCTGCAAATAACATGAGACTATACTGACCATATAAAATTACAATGGTACCTCAATAGGCAGAATATCTGCATCTGACTTCGAATTCAAGGACCAAACACTACCGAAGTTCGCCTTTGATCACTTTAGATGCATACACATTTCACTTATCTATGAAAAACTAAAAACTAAAAGGGTTATCTAGGATATATGTCAGTAAGTGTGATCCCATTCGCAGAGATATCCTCTTCATAGATCTTACCAGACCGATCGTACACATAGACGCGCTGGTCAGATGTTTGAGAAGCTGAGTTCGAGTTTCCGTTGAAAAAAAATGCAGGCTCTGTTGGTGGCTGAAGCTCCATGTTATCCCTGGTCAGCATGAAAATGACTGATGGAATGTCCGGCCTGTCGTCAGGATCTGATTGGACACACAGCAGCCCAATGTGGATGCATCTTAGCGCCTGGTTTCGAAAGTGCCCTTCAAGTGATTGGTCAATTACCTGTGAAATCACACCTTCGGTCCAGTAACTCCATACATCACTTAGGAGATTCACTGTGTCAGTGGTGCCATCGCCATAGCTGCAGTTCTTTCTCTTGGTTACAATTTCAAGTACCAGCACGCCAAAGCTGAAAATGTCAATCTTTGGTGACACATTTCCATGTATTGCATACTCTGGTGCCATATATCCGTATGTTCCAACAATTCTAGTTGTCTTTGTGTGAGTATGACCTCCTCCTATCAGTCTTGCTAGTCCAAAGTCTGCAATTTTTG] [+] EMBL CB634502 [ AGA TA ACTGACC TTTAAAATTACAATGTTACCTCAATAGGCAGAATATCTGCATCTGACTTCGAATTCAAGGACCAAACACTCCCGAAGTTCGCCTTTGATCACTTTAGATGCATACACATTTCACTTATCTATGAAAAACTAAAAACTAAAAGGGTTATCTAGGATATGTGTCAGTAAGTGTGATCCCATTCGCAGAGATATCCTCTTCATAGATCTTACCAGACCGATCGTACACATAGACGCGCTGGTCAGATGTTTGAGAAGCTGAGTTCGAGTTTCCGTTGAAGAAGAATGCAGGCTCTGTTGGTGGCTGAAGCTCCATGTTATCCCTGGTCAGCATGAAAATGACTGATGGAATGTCCGGCCTGTCGTCAGGATCTGATTGGACACACAGCAGCCCAATGTGGATGCATCTTAGCGCCTGGTTTCGAAAGTGCCCTTCAAGTGATTGGTCAATTACCTGTGAAATCACACCTTCGGTCCAGTAACTCCATACATCACTTAGGAGATTCACTGTGTCAGTGGTGCCATCGCCATAGCTGCAGTTCTTTCTCTTGGTTACAATTTCAAGTACCAGCACGCCAAAGCTGAAAATGTCAATCTTTGGTGACACATTTCCATGTATTGCATACTCTGGTGCCATATATCCGTATGTTCCAACAATTCTAGTTGTCTTTGTGTGAGTATGACCTCCTCCTAT ] consensusID : consensus_5701#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 756 fasta sequence [TCTTTTTTTTTTTTTTTTTTGAGATAACTGACCATATAAAATTACAATGGTACCTCAATAGGCAGAATATCTGCATCTGACTTCGAATTCAAGGACCAAACACTAGCGAAGTTCCCCTTTGATCACTTTAGATGCATACACATTTCACTTATCTATGAAAAACTAAAAACTAAAAGGGTTATCTAGGATATATGTCAGTAAGTGTGATCCCATTCGCAGAAATATCCTCTTCATAGATCTTACCAGACCGATCGTACACATAGACGCGCTGGTCAGATGTTTGAGAAGCTGAGTTCGAGTTTCCGTTGAAAAAAAATGCAGGCTCTGTTGGTGGCTGAAGCTCCATGTTATCCCTGGTCAGCATGAAAATGACTGATGGAATGTCCGGCCTGTCGTCAGGATCTGATTGGACACACAGCAGCCCAATGGGGATGCATCTTAGCGCCTGGTTTCGAAAGTGCCCTTCAAGTGATTGGTCAATTACCTGTGAAATCACACCTTCGGTCCAGTAACTCCATACATCACTTAGGAGATTCACTGTGTCAGTGGTGCCATCGCCATAGCTGCAGTTCTTTCTCTTGGGTACAATTTCAAGTACCAGCACGCCAAAGCTGAAAATGTCAATCTTTGGTGACACATTTCCATGTATTGCATACTCTGGTGCCATATATCCGTATGTTCCAACAATTCTAGTTGTCTTTGTGTGAGTATGACCTCCTCCTATCAGTCTTGCTAGTCCAAAGTCTGCAATTTTTG] [+] EMBL CB632757 [TCTTTTTTTTTTTTTTTTTTGAGATAACTGACCATATAAAATTACAATGGTACCTCAATAGGCAGAATATCTGCATCTGACTTCGAATTCAAGGACCAAACACTAGCGAAGTTCCCCTTTGATCACTTTAGATGCATACACATTTCACTTATCTATGAAAAACTAAAAACTAAAAGGGTTATCTAGGATATATGTCAGTAAGTGTGATCCCATTCGCAGAAATATCCTCTTCATAGATCTTACCAGACCGATCGTACACATAGACGCGCTGGTCAGATGTTTGAGAAGCTGAGTTCGAGTTTCCGTTGAAAAAAAATGCAGGCTCTGTTGGTGGCTGAAGCTCCATGTTATCCCTGGTCAGCATGAAAATGACTGATGGAATGTCCGGCCTGTCGTCAGGATCTGATTGGACACACAGCAGCCCAATGGGGATGCATCTTAGCGCCTGGTTTCGAAAGTGCCCTTCAAGTGATTGGTCAATTACCTGTGAAATCACACCTTCGGTCCAGTAACTCCATACATCACTTAGGAGATTCACTGTGTCAGTGGTGCCATCGCCATAGCTGCAGTTCTTTCTCTTGGGTACAATTTCAAGTACCAGCACGCCAAAGCTGAAAATGTCAATCTTTGGTGACACATTTCCATGTATTGCATACTCTGGTGCCATATATCCGTATGTTCCAACAATTCTAGTTGTCTTTGTGTGAGTATGACCTCCTCCTATCAGTCTTGCTAGTCCAAAGTCTGCAATTTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5701#0 TGTCTTTTTTATTTTTTTTAGCTCCAGTCTGCAAATAACATGAGACTATACTGACCATAT 60 consensus_5701#1 --TCTTTTTTTTTTTTTTT--------TTTG-AGATAAC------------TGACCATAT 37 ******** ******** * ** * ***** ********* consensus_5701#0 AAAATTACAATGGTACCTCAATAGGCAGAATATCTGCATCTGACTTCGAATTCAAGGACC 120 consensus_5701#1 AAAATTACAATGGTACCTCAATAGGCAGAATATCTGCATCTGACTTCGAATTCAAGGACC 97 ************************************************************ consensus_5701#0 AAACACTACCGAAGTTCGCCTTTGATCACTTTAGATGCATACACATTTCACTTATCTATG 180 consensus_5701#1 AAACACTAGCGAAGTTCCCCTTTGATCACTTTAGATGCATACACATTTCACTTATCTATG 157 ******** ******** ****************************************** consensus_5701#0 AAAAACTAAAAACTAAAAGGGTTATCTAGGATATATGTCAGTAAGTGTGATCCCATTCGC 240 consensus_5701#1 AAAAACTAAAAACTAAAAGGGTTATCTAGGATATATGTCAGTAAGTGTGATCCCATTCGC 217 ************************************************************ consensus_5701#0 AGAGATATCCTCTTCATAGATCTTACCAGACCGATCGTACACATAGACGCGCTGGTCAGA 300 consensus_5701#1 AGAAATATCCTCTTCATAGATCTTACCAGACCGATCGTACACATAGACGCGCTGGTCAGA 277 *** ******************************************************** consensus_5701#0 TGTTTGAGAAGCTGAGTTCGAGTTTCCGTTGAAAAAAAATGCAGGCTCTGTTGGTGGCTG 360 consensus_5701#1 TGTTTGAGAAGCTGAGTTCGAGTTTCCGTTGAAAAAAAATGCAGGCTCTGTTGGTGGCTG 337 ************************************************************ consensus_5701#0 AAGCTCCATGTTATCCCTGGTCAGCATGAAAATGACTGATGGAATGTCCGGCCTGTCGTC 420 consensus_5701#1 AAGCTCCATGTTATCCCTGGTCAGCATGAAAATGACTGATGGAATGTCCGGCCTGTCGTC 397 ************************************************************ consensus_5701#0 AGGATCTGATTGGACACACAGCAGCCCAATGTGGATGCATCTTAGCGCCTGGTTTCGAAA 480 consensus_5701#1 AGGATCTGATTGGACACACAGCAGCCCAATGGGGATGCATCTTAGCGCCTGGTTTCGAAA 457 ******************************* **************************** consensus_5701#0 GTGCCCTTCAAGTGATTGGTCAATTACCTGTGAAATCACACCTTCGGTCCAGTAACTCCA 540 consensus_5701#1 GTGCCCTTCAAGTGATTGGTCAATTACCTGTGAAATCACACCTTCGGTCCAGTAACTCCA 517 ************************************************************ consensus_5701#0 TACATCACTTAGGAGATTCACTGTGTCAGTGGTGCCATCGCCATAGCTGCAGTTCTTTCT 600 consensus_5701#1 TACATCACTTAGGAGATTCACTGTGTCAGTGGTGCCATCGCCATAGCTGCAGTTCTTTCT 577 ************************************************************ consensus_5701#0 CTTGGTTACAATTTCAAGTACCAGCACGCCAAAGCTGAAAATGTCAATCTTTGGTGACAC 660 consensus_5701#1 CTTGGGTACAATTTCAAGTACCAGCACGCCAAAGCTGAAAATGTCAATCTTTGGTGACAC 637 ***** ****************************************************** consensus_5701#0 ATTTCCATGTATTGCATACTCTGGTGCCATATATCCGTATGTTCCAACAATTCTAGTTGT 720 consensus_5701#1 ATTTCCATGTATTGCATACTCTGGTGCCATATATCCGTATGTTCCAACAATTCTAGTTGT 697 ************************************************************ consensus_5701#0 CTTTGTGTGAGTATGACCTCCTCCTATCAGTCTTGCTAGTCCAAAGTCTGCAATTTTTG 779 consensus_5701#1 CTTTGTGTGAGTATGACCTCCTCCTATCAGTCTTGCTAGTCCAAAGTCTGCAATTTTTG 756 *********************************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||