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Oryza sativa
cluster # 5702 cluster # 5702       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5702#0 length = 2353 sequences # 3  

consensusID : consensus_5702#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2353
fasta sequence
                              [TCCATATTTTCCTTGCTACCAACATCAACCGGCTGTTCTTCCATGCATGAGCTAGTTTGAGTTAGCTATCTTGATCTACAACTCAAGCACAAATGGCAGAAGCAATTATTCTTGCTCTATCAAAGATTAATAGTACTTTTGGATTGGATCCCACAAATATTGCCAAATCTGCAGTATCCAAGCTATATCAGAAAGGAAAGAGTTTGGCGGAGTTACCGGGGAAGGTTGAAGAAATAAGAATGGAACTAACAACAATGGAAAATGTCATAGAACAACTAGATACAGCACATCTCACTGACAAAGTTATCAAGGGTTGGATTGCGGAGGTACGAAAGCTGGCCTACCATGTTGAGGATGTAATGGACAAATACTCATATCATGCTCTTCAAATGGAGGAAGAAGGGTTCCTGAAAAAGTACGTTGTCAAAGGATCACATTATGCCATTGTTTTCGATGGAATTGTTGCTGAGATAGTCCAGATTGAGCAGGAAATCCAAAGAGTTATAAAGCTGAAAGATAAATGGCTGCAACCATCCCAGCTTATCCGTAATAAACATTCTGATTTTGAAAGAAAGCGGTCACAAGGCTGCTTGCCAGAGCTCGTGAAGGATGAAGATCTTGTGGGGATCGAAGGCAACAGGATGTTATTGACTGGATGGTTGTACTCAAATGAACTAGATAGCACAGTGATAATAGTATCTGGCATGGGTGGATTAGGAAAAACTACCATTGTTGCCAATGTGTATGAGCGTGGGAAGATCAGGTTCCATGCTCATGCTTGGATTGTCGTGTCACAGACCTATGACGTAGAAGAATTGCTGAGGAAGGTACTCAGGAAGATTGGATATGCAGATCAAGCACACTTGGATGGTATGGATGTTCATGACTTAAAAGAGAAGTTCAAAGAAAACATAAGTGATAGAAGGTGTTTGATAGTGTTGGATGATGTCTGGGATAGAGAAGCATACAACCAAATACATGATGCCTTCCAAAATCTCCAGGCAAGCCGCATCATCATCACTACACGGAGTAAGCATGTGGCAGCACTAGCTCTACCAACACGTCACCTTAAACTCCAACCTTTGGACAAGGTCGATGCATTCAGTCTCTTCTGCAGAAGGGCTTTTTATAGCAGGAAGGACTACGATTGCCCCTCAGAACTTCTAGAGTTGGCTAATTCAATCGTCGATAGGTGTCAAGGCCTACCTCTAGCTATCGTATCTATTGGGAGCCTGTTGTCCTCAAAGCAGCCGATACAGCATGCTTGGAAGCAAACATACAATCAGCTACAGAGCGAGCTAGCAAAGAGTGATCATGTACAAGCAATTCTGAACCTAAGCTACTATGACTTACCAGGAGACCTCAGTAACTGCTTTTTGTATTGCAGCATGTTCCCTGAGGATTGCCCCATGCCACGAGACAACCTTGTACGACTTTGGGTTGCTGAAGGATTTGCTGCAAGAAAAGAAAACAACACGCCAGAAGACGTGGCTGAAGGAAATCTCAATGAACTGATCAACCGGAATATGCTGGAAGTGGTAGAGACAGATGAACTTGGTAGGGTTAGTACCTGTAAGATGCATGACATTATGCGTGATCTAGCTCTTTTTGTGGCTAAAGATGAGAGATTTGGTTCAGCAAATGATTCTGGCACAATGATGCTGATGGATAATGAAGTCCGCCGCTTGTCAATGTGTCGTTGGGAGGACAAAGGTGTCTATAAAGCTAAATTTCCTCGCCTTCGAACATTAATATCAGTTCAAACAATTTCATCCTCCTCTAACATGTTGTCCTCAATTTTCTCTGAATCCACCTACCTCACTGTCCTTGAGCTGCAAGATTCTGAAATCACTGAAGTGCCAACAAGTATAGGGAATCTGTTTAACCTAAGATATATCGGCTTAAGGCGCACCAAAGTCAAGTCATTTCCAGAGACAATTGAGAAACTCTATAATCTCCACACTCTAGACATCAAGCAGACAAAAATAGAGAAGCTACCACGAGGGATTGTCAAGGTCAGGAAGCTACGACACCTTTTAGCTGACAAATGTGCTGATGAGAAGCATTCAGATTTCCGGTACTTCACTGGAGTTCAACCTCCGAAAGAGCTATCCAACTTAGAAGAGTTGCAGACACTCGAAACTGTGGAAGCCAGCAAAGATTTGGCCGAGCAGCTGAAGAAACTTACGCAACTGTGAAGCGTGTGGATTGACAACATAACTGATGTTGATTGTGCAGTTCTTTTTTCTACACTATCAAATATGCCACTTCTTTCAACCCTGCTTCTTTCCGCAAGTAGTAAAACTGAGACGCTTTGTTTCAAACCCTCGAGCCTATTTCAGGGAGGCTCCAC]

[+] EMBL AK067819             [TCCATATTTTCCTTGCTACCAACATCAACCGGCTGTTCTTCCATGCATGAGCTAGTTTGAGTTAGCTATCTTGATCTACAACTCAAGCACAAATGGCAGAAGCAATTATTCTTGCTCTATCAAAGATTAATAGTACTTTTGGATTGGATCCCACAAATATTGCCAAATCTGCAGTATCCAAGCTATATCAGAAAGGAAAGAGTTTGGCGGAGTTACCGGGGAAGGTTGAAGAAATAAGAATGGAACTAACAACAATGGAAAATGTCATAGAACAACTAGATACAGCACATCTCACTGACAAAGTTATCAAGGGTTGGATTGCGGAGGTACGAAAGCTGGCCTACCATGTTGAGGATGTAATGGACAAATACTCATATCATGCTCTTCAAATGGAGGAAGAAGGGTTCCTGAAAAAGTACGTTGTCAAAGGATCACATTATGCCATTGTTTTCGATGGAATTGTTGCTGAGATAGTCCAGATTGAGCAGGAAATCCAAAGAGTTATAAAGCTGAAAGATAAATGGCTGCAACCATCCCAGCTTATCCGTAATAAACATTCTGATTTTGAAAGAAAGCGGTCACAAGGCTGCTTGCCAGAGCTCGTGAAGGATGAAGATCTTGTGGGGATCGAAGGCAACAGGATGTTATTGACTGGATGGTTGTACTCAAATGAACTAGATAGCACAGTGATAATAGTATCTGGCATGGGTGGATTAGGAAAAACTACCATTGTTGCCAATGTGTATGAGCGTGGGAAGATCAGGTTCCATGCTCATGCTTGGATTGTCGTGTCACAGACCTATGACGTAGAAGAATTGCTGAGGAAGGTACTCAGGAAGATTGGATATGCAGATCAAGCACACTTGGATGGTATGGATGTTCATGACTTAAAAGAGAAGTTCAAAGAAAACATAAGTGATAGAAGGTGTTTGATAGTGTTGGATGATGTCTGGGATAGAGAAGCATACAACCAAATACATGATGCCTTCCAAAATCTCCAGGCAAGCCGCATCATCATCACTACACGGAGTAAGCATGTGGCAGCACTAGCTCTACCAACACGTCACCTTAAACTCCAACCTTTGGACAAGGTCGATGCATTCAGTCTCTTCTGCAGAAGGGCTTTTTATAGCAGGAAGGACTACGATTGCCCCTCAGAACTTCTAGAGTTGGCTAATTCAATCGTCGATAGGTGTCAAGGCCTACCTCTAGCTATCGTATCTATTGGGAGCCTGTTGTCCTCAAAGCAGCCGATACAGCATGCTTGGAAGCAAACATACAATCAGCTACAGAGCGAGCTAGCAAAGAGTGATCATGTACAAGCAATTCTGAACCTAAGCTACTATGACTTACCAGGAGACCTCAGTAACTGCTTTTTGTATTGCAGCATGTTCCCTGAGGATTGCCCCATGCCACGAGACAACCTTGTACGACTTTGGGTTGCTGAAGGATTTGCTGCAAGAAAAGAAAACAACACGCCAGAAGACGTGGCTGAAGGAAATCTCAATGAACTGATCAACCGGAATATGCTGGAAGTGGTAGAGACAGATGAACTTGGTAGGGTTAGTACCTGTAAGATGCATGACATTATGCGTGATCTAGCTCTTTTTGTGGCTAAAGATGAGAGATTTGGTTCAGCAAATGATTCTGGCACAATGATGCTGATGGATAATGAAGTCCGCCGCTTGTCAATGTGTCGTTGGGAGGACAAAGGTGTCTATAAAGCTAAATTTCCTCGCCTTCGAACATTAATATCAGTTCAAACAATTTCATCCTCCTCTAACATGTTGTCCTCAATTTTCTCTGAATCCACCTACCTCACTGTCCTTGAGCTGCAAGATTCTGAAATCACTGAAGTGCCAACAAGTATAGGGAATCTGTTTAACCTAAGATATATCGGCTTAAGGCGCACCAAAGTCAAGTCATTTCCAGAGACAATTGAGAAACTCTATAATCTCCACACTCTAGACATCAAGCAGACAAAAATAGAGAAGCTACCACGAGGGATTGTCAAGGTCAGGAAGCTACGACACCTTTTAGCTGACAAATGTGCTGATGAGAAGCATTCAGATTTCCGGTACTTCACTGGAGTTCAACCTCCGAAAGAGCTATCCAACTTAGAAGAGTTGCAGACACTCGAAACTGTGGAAGCCAGCAAAGATTTGGCCGAGCAGCTGAAGAAACTTACGCAACTGTGAAGCGTGTGGATTGACAACATAACTGATGTTGATTGTGCAG                                                                                                                   ]
[+] EMBL CB628038             [                           ACCGGCTGTTCTTCCATGCATGAGCTAGTTTGAGTTATCTATCTTGATCTACAACTCAAGCACAAATGGCAGAAGCAATTATTCTTGCTCTATCAAAGATTAATAGTACTTTTGGATTGGATCCCACAGATATTGCCAAATCTGCAGGATCCAAGGTATATCAGAAAGGAAAGAGTTTGGTGGAGTTACCGGGGAAGGGTGAAGAAATAAGAATGGAACTAACAACAATGGAAAATGTCATATAACAACTAAATACAGCACATCTCACTGACAGAGTTGTCAAGGGTTGGATTGCGGAGGTACTAAAGCTGGCCTACCATGTTGAGGATGTAATGGACAAATACTCATATCATGCTCTTCAAATGGAGGAAGAAGGGTTCCTGAAAAAGTACGGTGTCAAAGGATCACATTATGCCATTGTTTTCGATGGAATTGTTGCTGAGACAGTCCAGATTGAGCAGGAAATCCAAAGAGTTATAAAGCTGAAAGATAAATGGCTGCAACCATCCCAGCTTATCCGTAATAAACATTCTGACTTTGAAAGAAAGCGGACACAAGGCTGCTTGCCAGAGCTCGTATAGGATGAAGATCTTGTGGGGATCCAAGGCAACAGGATGTTATTGACTGGATGGGTGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB682521             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GTTACTCTCTGTAAGATGCATGACATTATGCGTGATCTAGCTCTTTTTGTGGCTAAAGATGAGAGATTTGGTTCAGCAAATGATTCTGGCACAATGATGCTGATGGATAATGAAGTCCGCCGCTTGTCAATGTGTCGTTGGGAGGACAAAGGTGTCTATAAAGCTAAATTTCCTCGCCTTCGAACATTAATATCAGTTCAAACAATTTCATCCTCCTCTAACATGTTGTCCTCAATTTTCTCTGAATCCACCTACCTCACTGTCCTTGAGCTGCAAGATTCTGAAATCACTGAAGTGCCAACAAGTATAGGGAATCTGTTTAACCTAAGATATATCGGCTTAAGGCGCACCAAAGTCAAGTCATTTCCAGAGACAATTGAGAAACTCTATAATCTCCACACTCTAGACATCAAGCAGACAAAAATAGAGAAGCTACCACGAGGGATTGTCAAGGTCAGGAAGCTACGACACCTTTTAGCTGACAAATGTGCTGATGAGAAGCATTCAGATTTCCGGTACTTCACTGGAGTTCAACCTCCGAAAGAGCTATCCAACTTAGAAGAGTTGCAGACACTCGAAACTGTGGAAGCCAGCAAAGATTTGGCCGAGCAGCTGAAGAAACTTACGCAACTGTGAAGCGTGTGGATTGACAACATAACTGATGTTGATTGTGCAGTTCTTTTTTCTACACTATCAAATATGCCACTTCTTTCAACCCTGCTTCTTTCCGCAAGTAGTAAAACTGAGACGCTTTGTTTCAAACCCTCGAGCCTATTTCAGGGAGGCTCCAC]


>consensus_5702#0 TCCATATTTTCCTTGCTACCAACATCAACCGGCTGTTCTTCCATGCATGAGCTAGTTTGA GTTAGCTATCTTGATCTACAACTCAAGCACAAATGGCAGAAGCAATTATTCTTGCTCTAT CAAAGATTAATAGTACTTTTGGATTGGATCCCACAAATATTGCCAAATCTGCAGTATCCA AGCTATATCAGAAAGGAAAGAGTTTGGCGGAGTTACCGGGGAAGGTTGAAGAAATAAGAA TGGAACTAACAACAATGGAAAATGTCATAGAACAACTAGATACAGCACATCTCACTGACA AAGTTATCAAGGGTTGGATTGCGGAGGTACGAAAGCTGGCCTACCATGTTGAGGATGTAA TGGACAAATACTCATATCATGCTCTTCAAATGGAGGAAGAAGGGTTCCTGAAAAAGTACG TTGTCAAAGGATCACATTATGCCATTGTTTTCGATGGAATTGTTGCTGAGATAGTCCAGA TTGAGCAGGAAATCCAAAGAGTTATAAAGCTGAAAGATAAATGGCTGCAACCATCCCAGC TTATCCGTAATAAACATTCTGATTTTGAAAGAAAGCGGTCACAAGGCTGCTTGCCAGAGC TCGTGAAGGATGAAGATCTTGTGGGGATCGAAGGCAACAGGATGTTATTGACTGGATGGT TGTACTCAAATGAACTAGATAGCACAGTGATAATAGTATCTGGCATGGGTGGATTAGGAA AAACTACCATTGTTGCCAATGTGTATGAGCGTGGGAAGATCAGGTTCCATGCTCATGCTT GGATTGTCGTGTCACAGACCTATGACGTAGAAGAATTGCTGAGGAAGGTACTCAGGAAGA TTGGATATGCAGATCAAGCACACTTGGATGGTATGGATGTTCATGACTTAAAAGAGAAGT TCAAAGAAAACATAAGTGATAGAAGGTGTTTGATAGTGTTGGATGATGTCTGGGATAGAG AAGCATACAACCAAATACATGATGCCTTCCAAAATCTCCAGGCAAGCCGCATCATCATCA CTACACGGAGTAAGCATGTGGCAGCACTAGCTCTACCAACACGTCACCTTAAACTCCAAC CTTTGGACAAGGTCGATGCATTCAGTCTCTTCTGCAGAAGGGCTTTTTATAGCAGGAAGG ACTACGATTGCCCCTCAGAACTTCTAGAGTTGGCTAATTCAATCGTCGATAGGTGTCAAG GCCTACCTCTAGCTATCGTATCTATTGGGAGCCTGTTGTCCTCAAAGCAGCCGATACAGC ATGCTTGGAAGCAAACATACAATCAGCTACAGAGCGAGCTAGCAAAGAGTGATCATGTAC AAGCAATTCTGAACCTAAGCTACTATGACTTACCAGGAGACCTCAGTAACTGCTTTTTGT ATTGCAGCATGTTCCCTGAGGATTGCCCCATGCCACGAGACAACCTTGTACGACTTTGGG TTGCTGAAGGATTTGCTGCAAGAAAAGAAAACAACACGCCAGAAGACGTGGCTGAAGGAA ATCTCAATGAACTGATCAACCGGAATATGCTGGAAGTGGTAGAGACAGATGAACTTGGTA GGGTTAGTACCTGTAAGATGCATGACATTATGCGTGATCTAGCTCTTTTTGTGGCTAAAG ATGAGAGATTTGGTTCAGCAAATGATTCTGGCACAATGATGCTGATGGATAATGAAGTCC GCCGCTTGTCAATGTGTCGTTGGGAGGACAAAGGTGTCTATAAAGCTAAATTTCCTCGCC TTCGAACATTAATATCAGTTCAAACAATTTCATCCTCCTCTAACATGTTGTCCTCAATTT TCTCTGAATCCACCTACCTCACTGTCCTTGAGCTGCAAGATTCTGAAATCACTGAAGTGC CAACAAGTATAGGGAATCTGTTTAACCTAAGATATATCGGCTTAAGGCGCACCAAAGTCA AGTCATTTCCAGAGACAATTGAGAAACTCTATAATCTCCACACTCTAGACATCAAGCAGA CAAAAATAGAGAAGCTACCACGAGGGATTGTCAAGGTCAGGAAGCTACGACACCTTTTAG CTGACAAATGTGCTGATGAGAAGCATTCAGATTTCCGGTACTTCACTGGAGTTCAACCTC CGAAAGAGCTATCCAACTTAGAAGAGTTGCAGACACTCGAAACTGTGGAAGCCAGCAAAG ATTTGGCCGAGCAGCTGAAGAAACTTACGCAACTGTGAAGCGTGTGGATTGACAACATAA CTGATGTTGATTGTGCAGTTCTTTTTTCTACACTATCAAATATGCCACTTCTTTCAACCC TGCTTCTTTCCGCAAGTAGTAAAACTGAGACGCTTTGTTTCAAACCCTCGAGCCTATTTC AGGGAGGCTCCAC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)