These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5706#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence [CCAGTGGTGCTATCCACAGCCCCAGAGGATGAGCCAACTCATTGGCATCCAGACTATTCTGTACTTCCCTGATCCTATAGAGGTGAAACAAGACCAAATTATAGAAGGCTCTGTAAAAGTGTCTCAGAGTGAGGAAAACCCACGTTTTCTGAATATTCAACTAGATTGCACCACGGGAGGCCAAACATTGGTGAAAGATTATGCCATGCGATGAATGGTGTTCTTAGTTTGCTGATCTGGATTCCCCGACTTCTGATGGTAAGATCCTACAACTTGCAAGAGGGTCTCTTCCAGCAATCATGAACTGAGGTCATTGGCAATTGATGCTGAATTGTTGTATGCATGTTGATAACAGTAACGAGAATTCCTCCACTTATTTTCTTTCCTTTATTCTTTTGAGTTTTTCCTTGTGTTTATTTTTTCTAGTTTTCACTGGCGATGTAGATGAACCGAGAATGCAAATTTTCGGTTTAAGTGCAGTGGAGATAGGATTGCATTATTTCAGTTTGTCGAATGCTTTAGTTTTGTGGATGCTTTTTCGTTGGTATCTTGTCTGACTTTGATGTGCTTAAAAAAAA] [+] EMBL AU095166 [CCAGTGGTGCTATCCACAGCCCCAGAGGATGAGCCAACTCATTGGCATCCAGACTATTCTGTACTTCCCTGATCCTATAGAGGTGAAACAAGACCAAATTATAGAAGGCTCTGTAAAAGTGTCTCAGAGTGAGGAAAACCCACGTTTTCTGAATATTCAACTAGATTGCACCACGGGAGGCCAAACATTGGTGAAAGATTATGCCATGCGATGAATGGTGTTCTTAGTTTGCTGATCTGGATTCCCCGACTTCTGATGGTAAGATCCTACAACTTGCAAGAGGGTCTCTTCCAGCAATCATGAACTGAGGTCATTGGCAATTGATGCTGAATTGTTGTATGCATGTTGATAACAGTAACGAGAATTCCTCCACTTATTTTCTTTCCTTTATTCTTTTGAGTTTTTCCTTGTGTTTATTTTTTCTAGTTTTCACTGGCGATGTAGATGAACCGAGAATGCAAATTTTCGGTTTAAGTGCAGTGGAGATAGGATTGCATTATTTCAGTTTGTCGAATGCTTTAGTTTTGTGGATGCTTTTTCGTTGGTATCTTGTCTGACTTTGATGTGCTTAAAAAAAA] consensusID : consensus_5706#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence [GAGTTTGGAATCCCACTGTCGATGGTGTAATTCGGTGACCGAAAAGGGCGCCCGAAGGAATCAGAAGAGTCCCAGTGGTGGCTAATCCACAGCCCCCCAGAGGATGAGCCCAACTCATTGGCATCAGACTATTGCTGGTACTTCCCTGGATCCTATAGAGGTGTAAACAAGACCAAATTATAGAAGGCTCTGTAAAAGTGTCTCAGAGTGAGGAAAACCCACGTTTTCTGAATATTCAACTAGATTGCACCACGGGAGGCCACAACATTGGTGAAAGATTATGCCATGCGATGAATGGTGTTCTTAGTTTGCTGATCTGGATTCCCCGACTTCTGATGTCAGGATGAGAGATAAGGGTAAAGTGAGAAGATGGGAAAAATGGAGACGAGCTGTTTTTCTCATGAACCAAAAGGCTACAGCATAACCTTTGCCTGCTGTGACATTGAGCTTTTACTTTC] [-] EMBL BU667083 [GAGTTTGGAATCCCACTGTCGATGGTGTAATTCGGTGACCGAAAAGGGCGCCCGAAGGAATCAGAAGAGTCCCAGTGGTGGCTAATCCACAGCCCCCCAGAGGATGAGCCCAACTCATTGGCATCAGACTATTGCTGGTACTTCCCTGGATCCTATAGAGGTGTAAACAAGACCAAATTATAGAAGGCTCTGTAAAAGTGTCTCAGAGTGAGGAAAACCCACGTTTTCTGAATATTCAACTAGATTGCACCACGGGAGGCCACAACATTGGTGAAAGATTATGCCATGCGATGAATGGTGTTCTTAGTTTGCTGATCTGGATTCCCCGACTTCTGATGTCAGGATGAGAGATAAGGGTAAAGTGAGAAGATGGGAAAAATGGAGACGAGCTGTTTTTCTCATGAACCAAAAGGCTACAGCATAACCTTTGCCTGCTGTGACATTGAGCTTTTACTTTC] consensusID : consensus_5706#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [AAACATTGGTGAAAGATTATGCCATGCGATGAATGGTGTTCTTAGTTTGCTGATCTGGATTCCCCGACTTCTNATGGTAAGATCCTACAACTTGCAANAGGGTCTCTTCCAGCAATCATGAACTGAGGTCATTGGCAATTGATGCTGAATTGTTGTATGCATGTTGATANCAGTAACGAGAATTCCTCCNCTTATTTTCTTTCCTTTATTCTTTTGAGTTTTTCCTTGNGTTTATTTTTTCTAGTTTTCNCTGGCNATGTANATGAACCGAGAATGCAAATTTTCGGTTTAAGTGCAGTGGANATAGGATTGCATTATTTCAGTTTGTCGAATGCTTTAGTTTTGTGGATGCTTTTTCGTTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU093213 [AAACATTGGTGAAAGATTATGCCATGCGATGAATGGTGTTCTTAGTTTGCTGATCTGGATTCCCCGACTTCTNATGGTAAGATCCTACAACTTGCAANAGGGTCTCTTCCAGCAATCATGAACTGAGGTCATTGGCAATTGATGCTGAATTGTTGTATGCATGTTGATANCAGTAACGAGAATTCCTCCNCTTATTTTCTTTCCTTTATTCTTTTGAGTTTTTCCTTGNGTTTATTTTTTCTAGTTTTCNCTGGCNATGTANATGAACCGAGAATGCAAATTTTCGGTTTAAGTGCAGTGGANATAGGATTGCATTATTTCAGTTTGTCGAATGCTTTAGTTTTGTGGATGCTTTTTCGTTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5706#0 CCAGTGGTGCTATCCACAGCCCCAGAGGATGAGCCAACTCATTGGCATCCAGACTATTCT 60 consensus_5706#2 ------------------------------------------------------------ consensus_5706#1 ------------------------------------------------------------ consensus_5706#0 GTACTTCCCTGATCCTATAGAGGTGAAACAAGACCAAATTATAGAAGGCTCTGTAAAAGT 120 consensus_5706#2 ------------------------------------------------------------ consensus_5706#1 ------------------------------------------------------------ consensus_5706#0 GTCTCAGAGTGAGGAAAACCCACGTTTTCTGAATATTCAACTAGATTGCACCACGGGAGG 180 consensus_5706#2 ------------------------------------------------------------ consensus_5706#1 ------------------------------------------------------------ consensus_5706#0 CCAAACATTGGTGAAAGATTATGCCATGCGATGAATGGTGTTCTTAGTTTGCTGATCTGG 240 consensus_5706#2 --AAACATTGGTGAAAGATTATGCCATGCGATGAATGGTGTTCTTAGTTTGCTGATCTGG 58 consensus_5706#1 -------------GAGTTTGGAATCCCACTGTCGATGGTGTAATTCGGTGACCGAAAAGG 47 * * * * * ******* ** * * * ** ** consensus_5706#0 ATTCCCCGACTTCTGATGGTAAGATCCTACAACTTGCAAGAGGGTCTCTTCCAGCAATCA 300 consensus_5706#2 ATTCCCCGACTTCTNATGGTAAGATCCTACAACTTGCAANAGGGTCTCTTCCAGCAATCA 118 consensus_5706#1 GCGCCCGAAGGAATCA--GAAGAGTCCCAGTGGTGGCTAATCCACAGCCCCCCAGAGG-A 104 *** * * * * * *** * * ** * * ** * * consensus_5706#0 TGAACTGAGGTCATTGGCA----ATTGATGCTGAATTGTTGTATGCATGTTGATAACAGT 356 consensus_5706#2 TGAACTGAGGTCATTGGCA----ATTGATGCTGAATTGTTGTATGCATGTTGATANCAGT 174 consensus_5706#1 TGAGCCCAACTCATTGGCATCAGACTATTGCTGG-TACTTCCCTGGATCCT-ATAGAGGT 162 *** * * ********* * * ***** * ** ** ** * *** ** consensus_5706#0 AACGAGAATTCCTCCACTTATTTTCTTTCCTTTATTCTTTTGAGTTTTTCCTTGTGTTTA 416 consensus_5706#2 AACGAGAATTCCTCCNCTTATTTTCTTTCCTTTATTCTTTTGAGTTTTTCCTTGNGTTTA 234 consensus_5706#1 GTAAACAAGACCAAATTATAGAAGGCTCTGTAAAAGTGTCTCAGAGTGAGGA-AAACCCA 221 * ** ** ** * * * * * ** * * consensus_5706#0 TTTTTTCTAGTTTTCACTGGCGATGTAGATGAACCGAGAATGCAAATTTTCGGTTTAAGT 476 consensus_5706#2 TTTTTTCTAGTTTTCNCTGGCNATGTANATGAACCGAGAATGCAAATTTTCGGTTTAAGT 294 consensus_5706#1 CGTTTTCTGAATATTCAACTAGAT-TGCACCACGGGAGGCCACAACATTGGTGAAAGATT 280 ****** * * ** * * * *** *** ** * * * consensus_5706#0 GCAGTGGAGATAGGATTGCATTATTTCAGTTTGTCGAATGCTTTAGTTTTGTGGATGCTT 536 consensus_5706#2 GCAGTGGANATAGGATTGCATTATTTCAGTTTGTCGAATGCTTTAGTTTTGTGGATGCTT 354 consensus_5706#1 ATGCCATGCGATGAATGGTGTTCTT--AGTTTGCTGA---TCTGGATTCCCCGACTTCTG 335 * ** * ** ** ****** ** * ** * * ** consensus_5706#0 TTTCGTTGGTATCTTGTCTGACTTTGATGTGCTTAAAAAAAA------------------ 578 consensus_5706#2 TTTCGTTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------- 397 consensus_5706#1 ATGTCAGGATGAGAGATAAGGGTAAAGTGAGAAGATGGGAAAAATGGAGACGAGCTGTTT 395 * * * * *** consensus_5706#0 ------------------------------------------------------------ consensus_5706#2 ------------------------------------------------------------ consensus_5706#1 TTCTCATGAACCAAAAGGCTACAGCATAACCTTTGCCTGCTGTGACATTGAGCTTTTACT 455 consensus_5706#0 --- consensus_5706#2 --- consensus_5706#1 TTC 458 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||