These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5710#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [ATCNTTGNNTCAACGGGGCCGNCTTCCTTTTTGGGAACCAGAAGNATTNNCCGTTGGGTTGGAAATTGGNCGNAGAATTNTGNATGGATTCCCAGAAGTGGAAATTTCGTCAGTGGCCGCCAGCACTTCCCCTTTGATGACTTGGCCAACACCGTTGGTANAAAAGCCCGGTGAATCCATCCGGNCCCGGCGCCTTCTCGTTGGGCATCTNTTTTATCACCTTCCAAACTTCCTCTTCAGAGAAAGGCACTTCCAGCTCTTGCAGGTTCGGCGCCGGAGGG] [+] EMBL AU176512 [ATCNTTGNNTCAACGGGGCCGNCTTCCTTTTTGGGAACCAGAAGNATTNNCCGTTGGGTTGGAAATTGGNCGNAGAATTNTGNATGGATTCCCAGAAGTGGAAATTTCGTCAGTGGCCGCCAGCACTTCCCCTTTGATGACTTGGCCAACACCGTTGGTANAAAAGCCCGGTGAATCCATCCGGNCCCGGCGCCTTCTCGTTGGGCATCTNTTTTATCACCTTCCAAACTTCCTCTTCAGAGAAAGGCACTTCCAGCTCTTGCAGGTTCGGCGCCGGAGGG] consensusID : consensus_5710#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [CTTGGATCAACGGGGGNCGNCATCCTTNTTGGGNAGCAGNAGTATTNACCGGTTGGGTTGGAGAATTGGCCGAGNATTCTGATGATTCCCAGAAGTGGAAATTTCGGTCAGTGGCCGCCAGCACTTCCCCTTTGATGACTTGGCCAACACCGTNGGTAGAAAAGCCCGGGGAATCCATCCGGNCCCGGCGCCTTCTCGTTNGGCATCTNTTTTATCACCTTCCAAACTTCCTCTTCANAGAAAGGCACTTCCAGCTCTTGCAGGTTCGGCGCCGGAGGGAA] [+] EMBL AU176509 [CTTGGATCAACGGGGGNCGNCATCCTTNTTGGGNAGCAGNAGTATTNACCGGTTGGGTTGGAGAATTGGCCGAGNATTCTGATGATTCCCAGAAGTGGAAATTTCGGTCAGTGGCCGCCAGCACTTCCCCTTTGATGACTTGGCCAACACCGTNGGTAGAAAAGCCCGGGGAATCCATCCGGNCCCGGCGCCTTCTCGTTNGGCATCTNTTTTATCACCTTCCAAACTTCCTCTTCANAGAAAGGCACTTCCAGCTCTTGCAGGTTCGGCGCCGGAGGGAA] consensusID : consensus_5710#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [TTTGATCAACGNGGGCGCATCCTTCTTTGGGAGCANAGTAATCACCGCTGTGTTGAGATTGTCGAGATTCTGATGATTCCCAGAGTGAAATTTCGTCAGTGCCGCCAGCACTTCCCCTTTGATGACTTGCCAACACCGTTGGTAGAAAAGCCCGGTGAATCCATCCGGTCCCGGCGCCTTCTCGTTTGGCATCTCTTTTATCACCTTCCAAACTTCCTCTTCAGAGAAAGGCACTTCCAGCTCTTGCAGGTTCGGCGCCGGAGGGAAGATTTGATTGAATT] [+] EMBL AU176513 [TTTGATCAACGNGGGCGCATCCTTCTTTGGGAGCANAGTAATCACCGCTGTGTTGAGATTGTCGAGATTCTGATGATTCCCAGAGTGAAATTTCGTCAGTGCCGCCAGCACTTCCCCTTTGATGACTTGCCAACACCGTTGGTAGAAAAGCCCGGTGAATCCATCCGGTCCCGGCGCCTTCTCGTTTGGCATCTCTTTTATCACCTTCCAAACTTCCTCTTCAGAGAAAGGCACTTCCAGCTCTTGCAGGTTCGGCGCCGGAGGGAAGATTTGATTGAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5710#0 ATCNTTGNNTCAACGGGG-CCGNCTTCCTTTTTGGGAACCAGAAGNATTNNCCG-TTGGG 58 consensus_5710#1 ---CTTGGATCAACGGGGGNCGNCATCCTTNTTGGGNAGCAGNAGTATTNACCGGTTGGG 57 consensus_5710#2 ----TTTGATCAACGNGGGC--GCATCCTTCTTTGGGAGCANA-GTAATCACCG-CTGTG 52 ** ****** ** * ***** ** ** * ** * * * *** ** * consensus_5710#0 TTGGAAATTGGNCGNAGAATTNTGNATGGATTCCCAGAAGTGGAAATTTCG-TCAGTGGC 117 consensus_5710#1 TTGGAGAATTGGCCGAGNATTCTGAT--GATTCCCAGAAGTGGAAATTTCGGTCAGTGGC 115 consensus_5710#2 TTGAGA--TTGTCGA--GATTCTGAT--GATTCCCAGAGT--GAAATTTCG-TCAGTG-C 102 *** * * * *** ** ********** ********* ****** * consensus_5710#0 CGCCAGCACTTCCCCTTTGATGACTTGGCCAACACCGTTGGTANAAAAGCCCGGTGAATC 177 consensus_5710#1 CGCCAGCACTTCCCCTTTGATGACTTGGCCAACACCGTNGGTAGAAAAGCCCGGGGAATC 175 consensus_5710#2 CGCCAGCACTTCCCCTTTGATGACTTG-CCAACACCGTTGGTAGAAAAGCCCGGTGAATC 161 *************************** ********** **** ********** ***** consensus_5710#0 CATCCGGNCCCGGCGCCTTCTCGTTGGGCATCTNTTTTATCACCTTCCAAACTTCCTCTT 237 consensus_5710#1 CATCCGGNCCCGGCGCCTTCTCGTTNGGCATCTNTTTTATCACCTTCCAAACTTCCTCTT 235 consensus_5710#2 CATCCGGTCCCGGCGCCTTCTCGTTTGGCATCTCTTTTATCACCTTCCAAACTTCCTCTT 221 ******* ***************** ******* ************************** consensus_5710#0 CAGAGAAAGGCACTTCCAGCTCTTGCAGGTTCGGCGCCGGAGGG---------------- 281 consensus_5710#1 CANAGAAAGGCACTTCCAGCTCTTGCAGGTTCGGCGCCGGAGGGAA-------------- 281 consensus_5710#2 CAGAGAAAGGCACTTCCAGCTCTTGCAGGTTCGGCGCCGGAGGGAAGATTTGATTGAATT 281 ** ***************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||