cluster # 5713

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5713 cluster # 5713 Sequences # 3 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5713#0 length = 1346 sequences # 3
consensusID : consensus_5713#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1346
fasta sequence
                              [TCTTTTTATTTCCCAGTTCCCACATTATATTCATCATGATCACCTCACTCAAAAATTCACCACAAAGTTCACAAAGGAGCATCTCAAACCAGTTGGTCAGATTACTGAATGTATATATAATACTCCTACATAGTTTAAGAAGTTCTCATAGTCACTTAGCTTAGCTTAGTTGAGATCAGCACAGCATATTGCAGACCAATTACCATCAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACTAATCATCTATGGAAGCACTGACCAAGCGACGATGACCGACATGGTGCAGAAGCCAAGCACGAAACGACCTTCGCTTCTCAAGGCCGGCCTAGCACTGAAGCTCATCTGCTTACCAACAACTGTGTCACTGCCATTCTCTGAAGCCTCAACACGGAGGTTCAGCTTGCCTTTCTCCTCAACCACAACGACGCGCCGCTGCAACACGACGAGCCCATCATCGGCGACAACCACCTTCCTATCACCAGAGTCGAGCAGCACCACGTCTTCGTCAATGCCAGCGGTGCGAGCGCTGAAACGGGCCCTGAAATCGGTCGATCCTTGGACGACATGGATTATGATGGTTGCTTCCACTGCATATGCGAATGTGCAAATGTGAACTCCAACGTGCTGTGCTCGGTTGACTCTACCTCTCTTCTTGCAAAGCCATTGTTTGTCAGGTAAGCATAGACAAACGCATGGTAGCTTAAAACCTTGTCTTGAGATGCTGGTACCCTACCCTTTACTTTGAGGTCAACCTCAAAAACAACAGGATCCAACACTACGACAGCTCGACTAGGGCCTGTAAGCACCAAAGATGATGAATCCTGCAGTAAGGTCTGGCAGTCGTCCCTCTCGCGGCAGAAGAGGATGTTCCTCTTGCGATCCAGTGAGTCGCGCACGGCGACAACACCATAGACATCCAGCGGCCACTGGAGGTCCCCCATAACCTCCACCACTTTAACCGAGAAGATTTGTAGCAGGTTCATCGGCCAAGACTCTGGCCATATTGGCCCGTCCGTATGCCGCATCGGCAAGATTTCCGTTTCGTCCTCGAAAGATCCTGTTTTACCGTAGATCTCAACCCAGTCCTCGCGGTAGGAGTCGAGGGGATTGGAGGGTGGCTCGTCGTCACCGTAGTCGTCGTCGTCGTCCATATACTGATGATGGTCGTCGTCGCCGCTGCCCTTGCGCAGCCGCTTGGCATCGCCTCCGGTGACGGCCTCCTCTGATCTGCAGTGGAGGTGGCTGGCCGCGTCCCCGCACCTCTCCGCGCCCGTATCCACCTCCATCACCGCCGGCCCGCCGCTTCTCATGAAAGCT]

[+] EMBL CB653441             [TCTTTTTATTTCCCAGTTCCCACATTATATTCATCATGATCACCTCACTCAAAAATTCACCACAAAGTTCACAAAGGAGCATCTCAAACCAGTTGGTCAGATTACTGAATGTATATATAATACTCCTACATAGTTTAAGAAGTTCTCATAGTCACTTAGCTTAGCTTAGTTGAGATCAGCACAGCATATTGCAGACCAATTACCATCAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACTAATCATCTATGGAAGCACTGACCAAGCGACGATGACCGACATGGTGCAGAAGCCAAGCACGAAACGACCTTCGCTTCTCAAGGCCGGCCTAGCACTGAAGCTCATCTGCTTACCAACAACTGTGTCACTGCCATTCTCTGAAGCCTCAACACGGAGGTTCAGCTTGCCTTTCTCCTCAACCACAACGACGCGCCGCTGCAACACGACGAGCCCATCATCGGCGACAACCACCTTCCTATCACCAGAGTCGAGCAGCACCACGTCTTCGTCAATGCCAGCGGTGCGAGCGCTGAAACGGGCCCTGAAATCGGTCGATCCTTGGACGACATGGATTATGATGGTTGCTTCCACTGCATATGCGAATGTGCAAATGTGAACTCCAACGTGCTGTGCTCGGTTGACTCTACCTCTCTTCTTGCAAAGCCATTGTTTGTCAGGTAAGCATAGACAAACGCATGGTAGCTTAAAACCTTGTCTTGAGATGCTGGTACCCTACCCTTTACTTTGAGGTCAACCTCAAAAACAACAGGATCCAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB663119             [                                                                                          nGTTGGTCAGATTACTGAATGTATATATAATACTCCTACATAGTTTAAGAAGTTCTCATAGTCACTTAGCTTAGCTTAGTTGAGATCAGCACAGCATATTGCAGACCAATTACCATCAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACTAATCATCTATGGAAGCACTGACCAAGCGACGATGACCGACATGGTGCAGAAGCCAAGCACGAAACGACCTTCGCTTCTCAAGGCCGGCCTAGCACTGAAGCTCATCTGCTTACCAACAACTGTGTCACTGCCATTCTCTGAAGCCTCAACACGGAGGTTCAGCTTGCCTTTCTCCTCAACCACAACGACGCGCCGCTGCAACACGACGAGCCCATCATCGGCGACAACCACCTTCCTATCACCAGAGTCGAGCAGCACCACGTCTTCGTCAATGCCAGCGGTGCGAGCGCTGAAACGGGCCCTGAAATCGGTCGATCCTTGGACGACATGGATTATGATGGTTGCTTCCACTGCATATGCGAATGTGCAAATGTGAACTCCAACGTGCTGTGCTCGGTTGACTCTACCTCTCTTCTTGCAAAGCCATTGTTTGTCAGGTAAGCATAGACAAACGCATGGTAGCTTAAAACCTTGTCTTGAGATGCTGGTACCCTACCCTTTACTTTGAGGTCAACCTCAAAAACAACAGGATCCAACACTACGACAGCTCGACTAGGGCCTGTAAGCACCAAAGATGATGAATCCTGCAGTAAGGTCTGGCAGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB663118             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCGAGCGCTGAAACGGGCCCTGAAATCGGTCGATCCTTGGACGACATGGATTATGATGGTTGCTTCCACTGCATATGCGAATGTGCAAATGTGAACTCCAACGTGCTGTGCTCGGTTGACTCTACCTCTCTTCTTGCAAAGCCATTGTTTGTCAGGTAAGCATAGACAAACGCATGGTAGCTTAAAACCTTGTCTTGAGATGCTGGTACCCTACCCTTTACTTTGAGGTCAACCTCAAAAACAACAGGATCCAACACTACGACAGCTCGACTAGGGCCTGTAAGCACCAAAGATGATGAATCCTGCAGTAAGGTCTGGCAGTCGTCCCTCTCGCGGCAGAAGAGGATGTTCCTCTTGCGATCCAGTGAGTCGCGCACGGCGACAACACCATAGACATCCAGCGGCCACTGGAGGTCCCCCATAACCTCCACCACTTTAACCGAGAAGATTTGTAGCAGGTTCATCGGCCAAGACTCTGGCCATATTGGCCCGTCCGTATGCCGCATCGGCAAGATTTCCGTTTCGTCCTCGAAAGATCCTGTTTTACCGTAGATCTCAACCCAGTCCTCGCGGTAGGAGTCGAGGGGATTGGAGGGTGGCTCGTCGTCACCGTAGTCGTCGTCGTCGTCCATATACTGATGATGGTCGTCGTCGCCGCTGCCCTTGCGCAGCCGCTTGGCATCGCCTCCGGTGACGGCCTCCTCTGATCTGCAGTGGAGGTGGCTGGCCGCGTCCCCGCACCTCTCCGCGCCCGTATCCACCTCCATCACCGCCGGCCCGCCGCTTCTCATGAAAGCT]




>consensus_5713#0
TCTTTTTATTTCCCAGTTCCCACATTATATTCATCATGATCACCTCACTCAAAAATTCAC
CACAAAGTTCACAAAGGAGCATCTCAAACCAGTTGGTCAGATTACTGAATGTATATATAA
TACTCCTACATAGTTTAAGAAGTTCTCATAGTCACTTAGCTTAGCTTAGTTGAGATCAGC
ACAGCATATTGCAGACCAATTACCATCAAACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACTAATCATCTATGGAAGCACTGACCAAGCGACGATG
ACCGACATGGTGCAGAAGCCAAGCACGAAACGACCTTCGCTTCTCAAGGCCGGCCTAGCA
CTGAAGCTCATCTGCTTACCAACAACTGTGTCACTGCCATTCTCTGAAGCCTCAACACGG
AGGTTCAGCTTGCCTTTCTCCTCAACCACAACGACGCGCCGCTGCAACACGACGAGCCCA
TCATCGGCGACAACCACCTTCCTATCACCAGAGTCGAGCAGCACCACGTCTTCGTCAATG
CCAGCGGTGCGAGCGCTGAAACGGGCCCTGAAATCGGTCGATCCTTGGACGACATGGATT
ATGATGGTTGCTTCCACTGCATATGCGAATGTGCAAATGTGAACTCCAACGTGCTGTGCT
CGGTTGACTCTACCTCTCTTCTTGCAAAGCCATTGTTTGTCAGGTAAGCATAGACAAACG
CATGGTAGCTTAAAACCTTGTCTTGAGATGCTGGTACCCTACCCTTTACTTTGAGGTCAA
CCTCAAAAACAACAGGATCCAACACTACGACAGCTCGACTAGGGCCTGTAAGCACCAAAG
ATGATGAATCCTGCAGTAAGGTCTGGCAGTCGTCCCTCTCGCGGCAGAAGAGGATGTTCC
TCTTGCGATCCAGTGAGTCGCGCACGGCGACAACACCATAGACATCCAGCGGCCACTGGA
GGTCCCCCATAACCTCCACCACTTTAACCGAGAAGATTTGTAGCAGGTTCATCGGCCAAG
ACTCTGGCCATATTGGCCCGTCCGTATGCCGCATCGGCAAGATTTCCGTTTCGTCCTCGA
AAGATCCTGTTTTACCGTAGATCTCAACCCAGTCCTCGCGGTAGGAGTCGAGGGGATTGG
AGGGTGGCTCGTCGTCACCGTAGTCGTCGTCGTCGTCCATATACTGATGATGGTCGTCGT
CGCCGCTGCCCTTGCGCAGCCGCTTGGCATCGCCTCCGGTGACGGCCTCCTCTGATCTGC
AGTGGAGGTGGCTGGCCGCGTCCCCGCACCTCTCCGCGCCCGTATCCACCTCCATCACCG
CCGGCCCGCCGCTTCTCATGAAAGCT
clustalw multiple alignements is not computed in this case