These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5717#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 553 fasta sequence [TCTTCGTCACCGACGACCGGGTGCTCTGCTGTGGCCTCGACATCCTACACTTCTTCACGCGAGACTCCTCGTTCCAGCCGCTCGACCTCCGCCCCCCCTCGTCGTCGTCGTCGGTCGCCCCGTCCTCCGGCGAGGCGACGCCGTACATGCGCCGCAGCCTCGACGCGGCTTGCGGCGGGAAAGCCCCACGCTGGATCGAGTTCTGGAGCGACGCCGCGTCCGACCGGCGCCGCCGTGACTCGTCCTCCTCGGAGGCCTCGACCGCGTCGTCGTCATCCGGGTGCGCGTCGCCGCCGGCGAGGAGATCGAGGACCCCGCACTGGGTCGACACCTACCTGGACAGGCTCGGGTCAGTCCTCAAGAGCGGCGGGTGGAGGGACACGGAGGTGAATGAGATGGTCGAGGTGACGGCCTCCGGTCTGTTCGACGGCGAGGAGGCGCCGGCGGTGGACGCCGACGCGGTGCTCGACGCGCTCCTCCTGAAGGCCGACAGGTGCTCGGACTCGCTCCGCCGTGCCGGGTGGAGCTCCGAGGACGTGTCCGACGCGCTGGG] [+] EMBL AU184546 [TCTTCGTCACCGACGACCGGGTGCTCTGCTGTGGCCTCGACATCCTACACTTCTTCACGCGAGACTCCTCGTTCCAGCCGCTCGACCTCCGCCCCCCCTCGTCGTCGTCGTCGGTCGCCCCGTCCTCCGGCGAGGCGACGCCGTACATGCGCCGCAGCCTCGACGCGGCTTGCGGCGGGAAAGCCCCACGCTGGATCGAGTTCTGGAGCGACGCCGCGTCCGACCGGCGCCGCCGTGACTCGTCCTCCTCGGAGGCCTCGACCGCGTCGTCGTCATCCGGGTGCGCGTCGCCGCCGGCGAGGAGATCGAGGACCCCGCACTGGGTCGACACCTACCTGGACAGGCTCGGGTCAGTCCTCAAGAGCGGCGGGTGGAGGGACACGGAGGTGAATGAGATGGTCGAGGTGACGGCCTCCGGTCTGTTCGACGGCGA ] [-] EMBL AU176522 [ TCATCCGGGTGCGCGTCGCCGCCGGCGAGGAGATCGAGGACCCCGCACTGGGTCGACACCTACCTGGACAGGCTCGGGTCAGTCATCAAGAGCGGCGGGTGGAGGGACACGGAGGTGAATGAGATGGTCGAGGTGACGGCCTCCGGTCTGTTCGACGGCGAGGAGGCGCCGGCGGTGGACGCCGACGCGGTGCTCGACGCGCTCCTCCTGAAGGCCGACAGGTGCTCGGACTCGCTCCGCCGTGCCGGGTGGAGCTCCGAGGACGTGTCCGACGCGCTGGG] consensusID : consensus_5717#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [TCTTCGTCACCGACGACCGGGTGCTCTGCTGTGGCCTCGACATCCTACACTTCTTCACGCGAGANTCCTCGTTCCAGCCGCTCGACCTCCGCCCCCANTCGTNGTCGTCGTCGGTNGACCCGTNCTCCGGNGAGGCGACGNCGTACATGNGCCGCAGCCTCGACGNGGNTTGNGGNGGGAAAGCCCNANGCTGGATCNANTTCTGGAGCAANGNCGTTNCGACCGGCGNCGAGTTNACTAGNTNCTNCTTGGAGGNCTCGACCGTNTNGTAGTNAATNCGTGTNTTNNTTTGAGTTTGAATTGAGATCTANGGAACNNNGACTNGGTTGANAGCTANNT] [+] EMBL OSR28101A [TCTTCGTCACCGACGACCGGGTGCTCTGCTGTGGCCTCGACATCCTACACTTCTTCACGCGAGANTCCTCGTTCCAGCCGCTCGACCTCCGCCCCCANTCGTNGTCGTCGTCGGTNGACCCGTNCTCCGGNGAGGCGACGNCGTACATGNGCCGCAGCCTCGACGNGGNTTGNGGNGGGAAAGCCCNANGCTGGATCNANTTCTGGAGCAANGNCGTTNCGACCGGCGNCGAGTTNACTAGNTNCTNCTTGGAGGNCTCGACCGTNTNGTAGTNAATNCGTGTNTTNNTTTGAGTTTGAATTGAGATCTANGGAACNNNGACTNGGTTGANAGCTANNT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5717#0 TCTTCGTCACCGACGACCGGGTGCTCTGCTGTGGCCTCGACATCCTACACTTCTTCACGC 60 consensus_5717#1 TCTTCGTCACCGACGACCGGGTGCTCTGCTGTGGCCTCGACATCCTACACTTCTTCACGC 60 ************************************************************ consensus_5717#0 GAGACTCCTCGTTCCAGCCGCTCGACCTCCGCCCCCCCTCGTCGTCGTCGTCGGTCGCCC 120 consensus_5717#1 GAGANTCCTCGTTCCAGCCGCTCGACCTCCGCCCCCANTCGTNGTCGTCGTCGGTNGACC 120 **** ******************************* **** ************ * ** consensus_5717#0 CGTCCTCCGGCGAGGCGACGCCGTACATGCGCCGCAGCCTCGACGCGGCTTGCGGCGGGA 180 consensus_5717#1 CGTNCTCCGGNGAGGCGACGNCGTACATGNGCCGCAGCCTCGACGNGGNTTGNGGNGGGA 180 *** ****** ********* ******** *************** ** *** ** **** consensus_5717#0 AAGCCCCACGCTGGATCGAGTTCTGGAGCGACGCCGCGTCCGACCGGCGCCGCCGTGACT 240 consensus_5717#1 AAGCCCNANGCTGGATCNANTTCTGGAGCAANGNCGT-TNCGACCGGCGNCGAGTTNACT 239 ****** * ******** * ********* * * ** * ********* ** * *** consensus_5717#0 CGT-CCTCCTCGGAGGCCTCGACCGCGTCGTCGTCA-TCCGGGTGCGCGTCGCCGCCGGC 298 consensus_5717#1 AGNTNCTNCTTGGAGGNCTCGACCGTNTNGTAGTNAATNCGTGTNTTNNTTTGAGTTTGA 299 * ** ** ***** ******** * ** ** * * ** ** * * * consensus_5717#0 GAGGAGATC-GAGGACCCCGCACTGGGTCGACACCTACCTGGACAGGCTCGGGTCAGTCC 357 consensus_5717#1 ATTGAGATCTANGGAACNNNGACTNGGTTGANAGCTANNT-------------------- 339 ****** *** * *** *** ** * *** * consensus_5717#0 TCAAGAGCGGCGGGTGGAGGGACACGGAGGTGAATGAGATGGTCGAGGTGACGGCCTCCG 417 consensus_5717#1 ------------------------------------------------------------ consensus_5717#0 GTCTGTTCGACGGCGAGGAGGCGCCGGCGGTGGACGCCGACGCGGTGCTCGACGCGCTCC 477 consensus_5717#1 ------------------------------------------------------------ consensus_5717#0 TCCTGAAGGCCGACAGGTGCTCGGACTCGCTCCGCCGTGCCGGGTGGAGCTCCGAGGACG 537 consensus_5717#1 ------------------------------------------------------------ consensus_5717#0 TGTCCGACGCGCTGGG 553 consensus_5717#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||