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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5718#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1298 fasta sequence
[TACCGTTGACCATGTTACTCTCCAGCCGCCTCCACCTCGCCACGCCCTCCTCGCCGGCAACCTGCCCCTCTCCGCTCCGCCGCCGCCGCCGCCTCGGCCTCCCGGAGCCACGAACGCGTCGCCCTCCGCCACTAGCTTCCAAGAACCCCGCGCCGCCGCAGCCGCAGCCGTTGCCGCTGTCCTGGCTGTCGCCGAGGCGGCAATGGCGGTGGCGGAGCGACTACGGCGACGCCGACGCCGCCGAAGAAGAATCACCGGCGCCGCTCGTCGAGGACGGGGTATCCGGTGGAGGGGAGAAGAAGAGCTTCTGGGCGGCGGTGAGCCTCATCGTCGGAACGGCGGTGGGGCCGGGGATGCTGGGGCTGCCGTCCGCCACCATCCGCTCCGGGCCGGTCCCGTCCACGGCGGCGATCGTGCTCTCGTGGGTCTACGTGGTGTCCTCCATCGTCCTCGTCGCGGAGCTCAGCTTCGCCGCGATGGAGGACGGCGGCGTCGACGAGGTCAGCTTCACGGGACTTGCGTCGAGCACCTTGGGGGCGACGCTCGGGGCGGTCGTGGCCGTCGTCTACGCCGCCCTCAGCTTCTCCCTGCTCGTCGCCTGCGTCGCCGGCATCGGCTCGCTGGTGTCCCAGCTCTTCCCGGCGGTGGATCCGGCCTTGGCCATGGTGTTGTCCTGGAATGCCGTCATTCTCGGGTTGGCAAGTTCCAGTGGCGGTGCGAGATCCGATGATCCAATTAAGCTGCTGCTCTCGGTGAATCCAGCAGCATTGCCTGCCGTTCGAGGCTTTGCGTTTGCCGCATTGGCGACGAGCTTGATAGGATACGCGGTGAGCTTTCCGAAGCAGCTGGCTGATACAGTGGAGTTGATTGGGCAGAGGTTTTCTCCGAAGCGAGGAATTGGGCAGCTCTCTGAATCTAGCGGTGGCCATGGAAGAAATGGGGCTATTCTCACATGGATTGTGCTGATTATTCCTATCGTTATTGCGTCGTTCTTCTCAGCGGCCTTCTCCAAGGCACTGGATTTTGCTGGGGTTTATGCAAACTGCTTCCTTTTTGGGATCCTCCCTCCTGTCATGGCCTGGATTCACCGGTCACAGAAGAGAAAGAGATCGTCTGGTTCATGTGAAGATATTTTGCCTGGTGGGAATGTTGCTTTGTTGATACTTTTCAGTATTGCTGTGGTCCTAGCATTCTGGCACTAGATGGTACGCCGTACGCACATCAGTGATGTACTTTGTTTCTTCGTATCAAACATTTCATGAGACAATCACAAATGTTAAGCCTGATAGAACTTTCAG]
[+] EMBL AK064193 [TACCGTTGACCATGTTACTCTCCAGCCGCCTCCACCTCGCCACGCCCTCCTCGCCGGCAACCTGCCCCTCTCCGCTCCGCCGCCGCCGCCGCCTCGGCCTCCCGGAGCCACGAACGCGTCGCCCTCCGCCACTAGCTTCCAAGAACCCCGCGCCGCCGCAGCCGCAGCCGTTGCCGCTGTCCTGGCTGTCGCCGAGGCGGCAATGGCGGTGGCGGAGCGACTACGGCGACGCCGACGCCGCCGAAGAAGAATCACCGGCGCCGCTCGTCGAGGACGGGGTATCCGGTGGAGGGGAGAAGAAGAGCTTCTGGGCGGCGGTGAGCCTCATCGTCGGAACGGCGGTGGGGCCGGGGATGCTGGGGCTGCCGTCCGCCACCATCCGCTCCGGGCCGGTCCCGTCCACGGCGGCGATCGTGCTCTCGTGGGTCTACGTGGTGTCCTCCATCGTCCTCGTCGCGGAGCTCAGCTTCGCCGCGATGGAGGACGGCGGCGTCGACGAGGTCAGCTTCACGGGACTTGCGTCGAGCACCTTGGGGGCGACGCTCGGGGCGGTCGTGGCCGTCGTCTACGCCGCCCTCAGCTTCTCCCTGCTCGTCGCCTGCGTCGCCGGCATCGGCTCGCTGGTGTCCCAGCTCTTCCCGGCGGTGGATCCGGCCTTGGCCATGGTGTTGTCCTGGAATGCCGTCATTCTCGGGTTGGCAAGTTCCAGTGGCGGTGCGAGATCCGATGATCCAATTAAGCTGCTGCTCTCGGTGAATCCAGCAGCATTGCCTGCCGTTCGAGGCTTTGCGTTTGCCGCATTGGCGACGAGCTTGATAGGATACGCGGTGAGCTTTCCGAAGCAGCTGGCTGATACAGTGGAGTTGATTGGGCAGAGGTTTTCTCCGAAGCGAGGAATTGGGCAGCTCTCTGAATCTAGCGGTGGCCATGGAAGAAATGGGGCTATTCTCACATGGATTGTGCTGATTATTCCTATCGTTATTGCGTCGTTCTTCTCAGCGGCCTTCTCCAAGGCACTGGATTTTGCTGGGGTTTATGCAAACTGCTTCCTTTTTGGGATCCTCCCTCCTGTCATGGCCTGGATTCACCGGTCACAGAAGAGAAAGAGATCGTCTGGTTCATGTGAAGATATTTTGCCTGGTGGGAATGTTGCTTTGTTGATACTTTTCAGTATTGCTGTGGTCCTAGCATTCTGGCACTAGATGGTACGCCGTACGCACATCAGTGATGTACTTTGTTTCTTCGTATCAAACATTTCATGAGACAATCACAAATGTTAAGCCTGATAGAACTTTCAG]
consensusID : consensus_5718#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[CATCCCCCTTGGGGCGGTCCCGTCCACGGCGGCGATCGTGCTCTCGTGGGTCTACGTGGTGTCCTCCATCGTCCTCGTCGCGGAGCTCAGCTTCGCCGCGATGGAGGACGGCGGCGTCGACGAGGTCAGCTTCACGGGACTTGCGTCGAGCACCTTGGGGGCGACGCTCGGGGCGGTCGTGGCCGTCGTCTACGCCGCCCTCAGCTTCTCCCTGCTCGTCGCCTGCGTCGCCGGCATCGGCTCGCTGGTGTCCCAGCTCTTCCCGGGGGTGGATCCGGCCTTGGCCAACGCCATCTTCCCGTGCTTCGCCGGGACGCTCATCGCGTTCTTCCCCTTCAAGGCCGTCGACGGCGCCAACCGCGCGCTCTGCGGCCTGATGCTCGCCTCCATCACCGCGCTTGTTGTCACCGGCGTTTCCGTCGGGCGGAGCAGCATGCTGAGATCGCTCGGCTACGCCTGCTGGCGCCCTGCTACCATCCTGCCTGCAATTCCGGTGACCGTCCTGACGCTTGGGTTCCATGTCATCACGCCGTTCATCTGCAAGATTGTGGGGGATTCAGTGTACGATGCGCGGCGCGCAATACTGATCGGCGGTGCCGTCCCATTGGCCATGGTGTTGTCCTGGAATGCCGTCATTCTCGGGTTGGCAAGTTCCAGTGGCGGTGCGAGATTCGATGATCCAATTAAG]
[+] EMBL CB653550 [CATCCCCCTTGGGGCGGTCCCGTCCACGGCGGCGATCGTGCTCTCGTGGGTCTACGTGGTGTCCTCCATCGTCCTCGTCGCGGAGCTCAGCTTCGCCGCGATGGAGGACGGCGGCGTCGACGAGGTCAGCTTCACGGGACTTGCGTCGAGCACCTTGGGGGCGACGCTCGGGGCGGTCGTGGCCGTCGTCTACGCCGCCCTCAGCTTCTCCCTGCTCGTCGCCTGCGTCGCCGGCATCGGCTCGCTGGTGTCCCAGCTCTTCCCGGGGGTGGATCCGGCCTTGGCCAACGCCATCTTCCCGTGCTTCGCCGGGACGCTCATCGCGTTCTTCCCCTTCAAGGCCGTCGACGGCGCCAACCGCGCGCTCTGCGGCCTGATGCTCGCCTCCATCACCGCGCTTGTTGTCACCGGCGTTTCCGTCGGGCGGAGCAGCATGCTGAGATCGCTCGGCTACGCCTGCTGGCGCCCTGCTACCATCCTGCCTGCAATTCCGGTGACCGTCCTGACGCTTGGGTTCCATGTCATCACGCCGTTCATCTGCAAGATTGTGGGGGATTCAGTGTACGATGCGCGGCGCGCAATACTGATCGGCGGTGCCGTCCCATTGGCCATGGTGTTGTCCTGGAATGCCGTCATTCTCGGGTTGGCAAGTTCCAGTGGCGGTGCGAGATTCGATGATCCAATTAAG]
consensusID : consensus_5718#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence
[TCCTTCTTGTTAGGTTGCATTAACCGTCAAACTTTCGTATACCAGTAGAGAACACAGTAAAAAGCATAATTAACTTATTACTCTAAACAAGTTTCAGATGCTGATCGACTCCAATTACCACATGGTTGGTCCACATGTAAATCAGAAAAGAGAGTAGCGTCGCCCAACACATATTTTTAACAGACATAATACTAGGATTAACACAGCAACTTAGGCAAGCAGGCAGCATCAAGTTACCAGATATGGAAGCTGCAGCTTCCAGATGCCTCCACTATCTAAGGCTCCTTTCATCTTGAAAGAATCAGCACCCAAAATTTCACACTAGATACTGCTTTTCACTTTTCTCAAGTTCAGAACGTTTTACATGTAAACAACGCAGAATCTTCAGATTTTCTTGGTATAGGCACTGAAAGAATAACCCAGTGTCAAAAGCAAAAGGTGATCTGATTTGGAGACAAAGATGGAGAGAGAGCCCCACACCTCTCAGATCTGGCACATTTTTCTTACCAACGTAGTACATGGTATCTTGTCTTCCAGAAGGGTTGGGCCCTGAGATATGTAGCCACCTTTGTCTTCCAGATGTCATCTAGTGCCAGAATGCTAGGACCACAGCAATACTGAAAAGTATCAACAAAGCAACATTCCCACCAGGCAAAATATCTTCACATGAACCAGA]
[+] EMBL CB653551 [TCCTTCTTGTTAGGTTGCATTAACCGTCAAACTTTCGTATACCAGTAGAGAACACAGTAAAAAGCATAATTAACTTATTACTCTAAACAAGTTTCAGATGCTGATCGACTCCAATTACCACATGGTTGGTCCACATGTAAATCAGAAAAGAGAGTAGCGTCGCCCAACACATATTTTTAACAGACATAATACTAGGATTAACACAGCAACTTAGGCAAGCAGGCAGCATCAAGTTACCAGATATGGAAGCTGCAGCTTCCAGATGCCTCCACTATCTAAGGCTCCTTTCATCTTGAAAGAATCAGCACCCAAAATTTCACACTAGATACTGCTTTTCACTTTTCTCAAGTTCAGAACGTTTTACATGTAAACAACGCAGAATCTTCAGATTTTCTTGGTATAGGCACTGAAAGAATAACCCAGTGTCAAAAGCAAAAGGTGATCTGATTTGGAGACAAAGATGGAGAGAGAGCCCCACACCTCTCAGATCTGGCACATTTTTCTTACCAACGTAGTACATGGTATCTTGTCTTCCAGAAGGGTTGGGCCCTGAGATATGTAGCCACCTTTGTCTTCCAGATGTCATCTAGTGCCAGAATGCTAGGACCACAGCAATACTGAAAAGTATCAACAAAGCAACATTCCCACCAGGCAAAATATCTTCACATGAACCAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5718#0 TACCGTTGACCATGTTACTCTCCAGCCGCCTCCACCTCGCCACGCCCTCCTCGCCGGCAA 60
consensus_5718#1 ------------------------------------------------------------
consensus_5718#2 ------------------------------------------------------------
consensus_5718#0 CCTGCCCCTCTCCGCTCCGCCGCCGCCGCCGCCTCGGCCTCCCGGAGCCACGAACGCGTC 120
consensus_5718#1 ------------------------------------------------------------
consensus_5718#2 ------------------------------------------------------------
consensus_5718#0 GCCCTCCGCCACTAGCTTCCAAGAACCCCGCGCCGCCGCAGCCGCAGCCGTTGCCGCTGT 180
consensus_5718#1 ------------------------------------------------------------
consensus_5718#2 ------------------------------------------------------------
consensus_5718#0 CCTGGCTGTCGCCGAGGCGGCAATGGCGGTGGCGGAGCGACTACGGCGACGCCGACGCCG 240
consensus_5718#1 ------------------------------------------------------------
consensus_5718#2 ------------------------------------------------------------
consensus_5718#0 CCGAAGAAGAATCACCGGCGCCGCTCGTCGAGGACGGGGTATCCGGTGGAGGGGAGAAGA 300
consensus_5718#1 ------------------------------------------------------------
consensus_5718#2 ------------------------------------------------------------
consensus_5718#0 AGAGCTTCTGGGCGGCGGTGAGCCTCATCGTCGGAACGGCGGTGGGGCCGGGGATGCTGG 360
consensus_5718#1 ------------------------------------------------------------
consensus_5718#2 ------------------------------------------------------------
consensus_5718#0 GGCTGCCGTCCGCCACCATCCGCTCCGGGCCGGTCCCGTCCACGGC--GGCGATCGTGCT 418
consensus_5718#1 ----------------CATCCCCCTTGGGGCGGTCCCGTCCACGGC--GGCGATCGTGCT 42
consensus_5718#2 -------------------TCCTTCTTGTTAGGTTGCATTAACCGTCAAACTTTCGTATA 41
* * *** * * ** * * ****
consensus_5718#0 CTCGTGGGTCTACGTGGTGTCCTCCATCGTC--CTCGTCGCGGAGCTCAGCTTCGCCGCG 476
consensus_5718#1 CTCGTGGGTCTACGTGGTGTCCTCCATCGTC--CTCGTCGCGGAGCTCAGCTTCGCCGCG 100
consensus_5718#2 CCAGTAGAGA-ACACAGTAAAAAGCATAATTAACTTATTACTCTAAACAAGTTTCAGATG 100
* ** * ** ** *** * ** * * ** ** *
consensus_5718#0 ATGGAGGACGGCGGCGTCGACGAGGTCAGCTTCACGGGACTTGCGTCGAGCACCTTGGGG 536
consensus_5718#1 ATGGAGGACGGCGGCGTCGACGAGGTCAGCTTCACGGGACTTGCGTCGAGCACCTTGGGG 160
consensus_5718#2 CTGATCGACTCCAATTACCACATGGTTGG-TCCAC---ATGTAAATCAGAAAAGAGAGTA 156
** *** * * ** *** * * *** * * ** * *
consensus_5718#0 GCGACGCTCGGGGCGGTCGTGGCCGTCGTCTACGCCGCCCTCAGCTTCTCCCTGCTCGTC 596
consensus_5718#1 GCGACGCTCGGGGCGGTCGTGGCCGTCGTCTACGCCGCCCTCAGCTTCTCCCTGCTCGTC 220
consensus_5718#2 GCGTCGCCCAACACA----TATTTTTAACAGACATAATACTAGGATTAACACAGCAACTT 212
*** *** * * * * ** ** * ** * * ** *
consensus_5718#0 GCCTGCGTCGCCGGCATCGGCTCGCTGG-TGTCCCAGCTCTTCCCGGCGGTGGATCCGGC 655
consensus_5718#1 GCCTGCGTCGCCGGCATCGGCTCGCTGG-TGTCCCAGCTCTTCCCGGGGGTGGATCCGGC 279
consensus_5718#2 AGGCAAGCAGGCAGCATCAAGTTACCAGATATGGAAGCTG---CAGCTTCCAGAT---GC 266
* * * ***** * * * * * **** * * *** **
consensus_5718#0 CTTGGCCATGGTGTTGTCCTGGAATGCCGTCA------TTCTCGGGTTGGCAAGTTCCAG 709
consensus_5718#1 CTTGGCCAACGCCATCTTCCCGTGCTTCGCCGGGACGCTCATCGCGTTCTTCCCCTTCAA 339
consensus_5718#2 CTCCACTATCTAAGGCTCCTTTCATCTTGAAAG------AATCAGCACCCAAAATTTCAC 320
** * * * * * ** * **
consensus_5718#0 TGGCGGTGCGAGATCCGATGATCCAATTAAGCTGCTGCTCTCGGTGAATCCAGCAGCATT 769
consensus_5718#1 GGCCGTCGACGGCGCCAACCGCGCGCTCTGCGGCCTGATGCTCGCC--TCCATCACCGC- 396
consensus_5718#2 ACTAGATACTGCTTTTCACTTTTC--TCAAGTTCAGAACGTTTTACATGTAAACAACGCA 378
* * * * * ** *
consensus_5718#0 GCCTGCCGTTCGAGGC-TTTGCGTTTGCCGCATTGGC--GACGAGCTTGATAGGATACGC 826
consensus_5718#1 GCTTGTTGTCACCGGCGTTTCCGTCGGGCGGAGCAGCATGCTGAGATCGCTCGGCTACGC 456
consensus_5718#2 GAAT----CTTCAGATTTTCTTGGTATAGGCACTGAAA-GAATAACCCAGTGTCAAAAGC 433
* * * ** * * * * * * * **
consensus_5718#0 G-GTGAGCTTTCCGA-AGCAGCTGGCTGATACAGTGGAGTTGATTGGGCAGAGGTTTT-- 882
consensus_5718#1 CTGCTGGCGCCCTGCTACCATCCTGCC--TGCAATTCCGGTGACCGTCCTGACGCTTGGG 514
consensus_5718#2 A-AAAGGTGATCTGA-----TTTGGAGACAAAGATGGAGAGAGAGCCCCACACCTCTCAG 487
* * * * * * * * *
consensus_5718#0 CTCCGAAGCGAGGAATTGGGCAGCTCTCTGAATCTAGCGGTGGCCATGGAAGAAATGGGG 942
consensus_5718#1 TTCCATGTCATCACGCCGTTCATCTGCAAGATTGTGGGGGATTCAGTGTACGATGCGCGG 574
consensus_5718#2 ATCTGGCACATTTTTCTTACCAACGTAGTACATGGTATCTTGTCTTCCAGAAGGGTTGGG 547
** * ** * * * **
consensus_5718#0 CTATTCTCACATGGATTGTGCTGATTATTCCTATCGTTATTGCGTCGTTCTTCTCAGCGG 1002
consensus_5718#1 CG--CGCAATACTGATCGGCGGTGCCGTCCCATTGGCCATGGTGTTGTCCTGGAATGCCG 632
consensus_5718#2 CC-CTGAGATATGTAGCCACCTTTGTCTTCCAGATGTCATC---TAGTGCCAGAATGCTA 603
* * * * * ** * ** * ** * **
consensus_5718#0 CCTTCTCCAAGGCACTGGATTTTGCTGGGGTTTATGCAAACTGCTTCCTTTTTGGGATCC 1062
consensus_5718#1 TCATTCTCGGGTTGGCAAGTTCCAGTGGCGGTGCGAGATTCGATGATCCAATTAAG---- 688
consensus_5718#2 GGACCACAGCAATACTGAAA---AGTATCAACAAAGCAACATTCCCACCAGGCAAAATAT 660
* * *
consensus_5718#0 TCCCTCCTGTCATGGCCTGGATTCACCGGTCACAGAAGAGAAAGAGATCGTCTGGTTCAT 1122
consensus_5718#1 ------------------------------------------------------------
consensus_5718#2 CTTCACATGAACCAGA-------------------------------------------- 676
consensus_5718#0 GTGAAGATATTTTGCCTGGTGGGAATGTTGCTTTGTTGATACTTTTCAGTATTGCTGTGG 1182
consensus_5718#1 ------------------------------------------------------------
consensus_5718#2 ------------------------------------------------------------
consensus_5718#0 TCCTAGCATTCTGGCACTAGATGGTACGCCGTACGCACATCAGTGATGTACTTTGTTTCT 1242
consensus_5718#1 ------------------------------------------------------------
consensus_5718#2 ------------------------------------------------------------
consensus_5718#0 TCGTATCAAACATTTCATGAGACAATCACAAATGTTAAGCCTGATAGAACTTTCAG 1298
consensus_5718#1 --------------------------------------------------------
consensus_5718#2 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||