These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5727#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1342 fasta sequence [AGCAGCAGCACCGCGGCCGCATGTGGGCCGCCTCACCGGCCTTCCGCAGGCGCCTCTTCCTCCTCCGTTCCCTTTCCCCCTCCCCCTGCGCCGCCCTCCCCGGCAACGCCGCCTGCTCCTCCTCCCCCTCGCCGTCGACCTCCATTCGGGTCAACGCGATGTCGGCATCGGGCCCCGTGTACGAGGCGGACGCTGAGGCGGTGGTCCGCCGGATCACCCCGCCGCTCGACCGCGCGCGCCACAAGGGCCAGGCAGGGAAAATTGCTGTAATTGGTGGATGTCGTGAGTACACTGGTGCTCCCTATTTTGCAGCGATTTCTGCCTTGAAAGTTGGTGCAGATCTCTCACATGTTTTCTGCACAAGAGATGCTGCAACGGTAATAAAGAGTTATAGCCCTGAGCTGATTGTACATCCAATACTAGAGGAATCTTACAGTGTAAGCGATGGTGAGAGAGAATCTGTTTCTTCTAGAATTCTCACAGAAGTAGCAAAGTGGATGGAGCGCTTTGATTGCATCGTTGTTGGTCCTGGCCTTGGAAGGGACTCATTTCTTCTGGACTGTGTAAGTAATATCATGAGACATGCACGGCAGGCAAATATTCCAACAGTCGTTGACGGGGATGGCCTTTTCCTTATAACCAATAACCTTAGTCTTGTTGAGGGTAACTTGCTTGCCATCCTAACACCAAATGTATACGAGTACAAACGTCTTGTCCAGAAGGTTCTTAACTGTGAAGTAAATGAGGAAAACGCTTCTGAACAACTTACTGCACTATGCCAAAAAAATCGGTGGCATAACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGATGGCAAAACTGTAACACAAGTAAGTACCTTTGGTTCCCCAAGGAGATGTGGTGGTCAAGGTGACATTCTTTCAGGAAGTGTTGCAGTATTTGCATCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAGCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAAAGCTGCATCACATGCTTTTGAGAAGAACAAGAGATCAACTGTCACCACTGACATCATTGAGTTACTGGGCAAAAGCTTAGAAGATATATGCCCTGCTGGTCATTAGTTTAGATCTTTACCATCATTGGTGGTACGGCGCCTTAGCACCTGTAATAATGGTAATCCATATGTTCGGATACCAGTCTCTCCCTGCTTAATGTACATGTTTCTTGACTGAAAAGATGGTGTTACAATGCTTGGTTTTGTTTAGCCTCCGTTTTGCTCAGAAGAATTCTACAGAATGAATAATGAATTGCCCCATAAATGGGGCT] [+] EMBL AK103343 [AGCAGCAGCACCGCGGCCGCATGTGGGCCGCCTCACCGGCCTTCCGCAGGCGCCTCTTCCTCCTCCGTTCCCTTTCCCCCTCCCCCTGCGCCGCCCTCCCCGGCAACGCCGCCTGCTCCTCCTCCCCCTCGCCGTCGACCTCCATTCGGGTCAACGCGATGTCGGCATCGGGCCCCGTGTACGAGGCGGACGCTGAGGCGGTGGTCCGCCGGATCACCCCGCCGCTCGACCGCGCGCGCCACAAGGGCCAGGCAGGGAAAATTGCTGTAATTGGTGGATGTCGTGAGTACACTGGTGCTCCCTATTTTGCAGCGATTTCTGCCTTGAAAGTTGGTGCAGATCTCTCACATGTTTTCTGCACAAGAGATGCTGCAACGGTAATAAAGAGTTATAGCCCTGAGCTGATTGTACATCCAATACTAGAGGAATCTTACAGTGTAAGCGATGGTGAGAGAGAATCTGTTTCTTCTAGAATTCTCACAGAAGTAGCAAAGTGGATGGAGCGCTTTGATTGCATCGTTGTTGGTCCTGGCCTTGGAAGGGACTCATTTCTTCTGGACTGTGTAAGTAATATCATGAGACATGCACGGCAGGCAAATATTCCAACAGTCGTTGACGGGGATGGCCTTTTCCTTATAACCAATAACCTTAGTCTTGTTGAGGGTAACTTGCTTGCCATCCTAACACCAAATGTATACGAGTACAAACGTCTTGTCCAGAAGGTTCTTAACTGTGAAGTAAATGAGGAAAACGCTTCTGAACAACTTACTGCACTATGCCAAAAAAATCGGTGGCATAACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGATGGCAAAACTGTAACACAAGTAAGTACCTTTGGTTCCCCAAGGAGATGTGGTGGTCAAGGTGACATTCTTTCAGGAAGTGTTGCAGTATTTGCATCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAGCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTCTCTACTACTTAGGAAAGCTGCATCACATGCTTTTGAGAAGAACAAGAGATCAACTGTCACCACTGACATCATTGAGTTACTGGGCAAAAGCTTAGAAGATATATGCCCTGCTGGTCATTAGTTTAGATCTTTACCATCATTGGTGGTACGGCGCCTTAGCACCTGTAATAATGGTAATCCATATGTTCGGATACCAGTCTCTCCCTGCTTAATGTACATGTTTCTTGACTGAAAAGATGGTGTTACAATGCTTGGTTTTGTTTAGCCTCCGTTTTGCTCAGAAGAATTCTACAGAATGAATAATGAATTGCCCCATAAATGGGGCT] [+] EMBL AU058051 [ TTCCATCATGGGCACGTCACTTTCTCCTGACGAATGAGTACCCTACAGAGAAGAGCGTGAATCCNATGATGCTTGGNTGCATTGCTGGCTCTCTACTACTTAGGAAAGCTGCATCACATGCTTTTAAGAAGAACAAGAGATCAACTGTCACCACTGACATCATTGAGTTACTGGGCAAAAGCTTGGAAGATATATNCCCTGCTGGTCATTAGTTTAGATCTTTACCATCATTGGTGGTACGGCGCCTTAGCACCTGTAATAATGGTAATCCATATGTNCGGATACCAGTCTCTCCCTGCTTAATGTACATGTTTCTTGACTNAAAAGATGGTGTTACAAaaaaaaaa ] consensusID : consensus_5727#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [CAGTGTAAGCGATGGTGAGAGAGAATCTGTTTCTTCTAGAATTCTCACAGAAGTAGCAAAGTGGATGGAGCGCTTTGATTGCATCGTTGTTGGTCCTGGCCTTGGAAGGGACTCATTTCTTCTGTTTGCACCTTTGGTCAAGCATTGTTGCAACTGTGTCTACCTCCATTCCTAATTGCATTAGTAGCTCCCAGGGCCAAGGATAGACCAGATTGGTGTTGATAACTCATCCTGTATTTCTGAAGATCTACAGTTTGAAATTATAAAGTTCCTTGATAGACTGTGTAAGTAATATCATGAGACATGCACGGCAGGCAAATATTCCAACAGTCGTTGACGGGGATGGCCTTTTCCTTATAACCAATAACCTTAGTCTTGTTGAGGGTAACTTGCTTGCCATCCTAACACCAAAT] [+] EMBL CA882803 [CAGTGTAAGCGATGGTGAGAGAGAATCTGTTTCTTCTAGAATTCTCACAGAAGTAGCAAAGTGGATGGAGCGCTTTGATTGCATCGTTGTTGGTCCTGGCCTTGGAAGGGACTCATTTCTTCTGTTTGCACCTTTGGTCAAGCATTGTTGCAACTGTGTCTACCTCCATTCCTAATTGCATTAGTAGCTCCCAGGGCCAAGGATAGACCAGATTGGTGTTGATAACTCATCCTGTATTTCTGAAGATCTACAGTTTGAAATTATAAAGTTCCTTGATAGACTGTGTAAGTAATATCATGAGACATGCACGGCAGGCAAATATTCCAACAGTCGTTGACGGGGATGGCCTTTTCCTTATAACCAATAACCTTAGTCTTGTTGAGGGTAACTTGCTTGCCATCCTAACACCAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5727#0 AGCAGCAGCACCGCGGCCGCATGTGGGCCGCCTCACCGGCCTTCCGCAGGCGCCTCTTCC 60 consensus_5727#1 ------------------------------------------------------------ consensus_5727#0 TCCTCCGTTCCCTTTCCCCCTCCCCCTGCGCCGCCCTCCCCGGCAACGCCGCCTGCTCCT 120 consensus_5727#1 ------------------------------------------------------------ consensus_5727#0 CCTCCCCCTCGCCGTCGACCTCCATTCGGGTCAACGCGATGTCGGCATCGGGCCCCGTGT 180 consensus_5727#1 ------------------------------------------------------------ consensus_5727#0 ACGAGGCGGACGCTGAGGCGGTGGTCCGCCGGATCACCCCGCCGCTCGACCGCGCGCGCC 240 consensus_5727#1 ------------------------------------------------------------ consensus_5727#0 ACAAGGGCCAGGCAGGGAAAATTGCTGTAATTGGTGGATGTCGTGAGTACACTGGTGCTC 300 consensus_5727#1 ----------------------CAGTGTAAGCGATGGTGAGAGAGAATCTGTTTCTTCTA 38 ***** * *** * ** * * * ** consensus_5727#0 CCTATTTTGCAGCGATTTCTGCCTTGAAAGTTGGTGCAGATCTCTCACATGTTTTCTGCA 360 consensus_5727#1 GAATTCTCACAGAAGTAGC-------AAAGTGGATGGAGCGCTTT-----GATTGCATCG 86 * * *** * * ***** * ** ** ** * * ** * * consensus_5727#0 CAAGAGATGCTGCAACGGTAATAAAGAGTTATAGCCCTGAGCTGATTGTACATCCAATAC 420 consensus_5727#1 TTGTTGGTCCTG--GCCTTGGAAGGGACTCATTTCTT----CTGTTTGCACCTTTGGTCA 140 * * *** * * * ** * ** * *** *** ** * * consensus_5727#0 TAGAGGAATCTTACAGTGTAAGCGATGGTGAGAGA--GAATCTGTTTCTTCTAGAATTCT 478 consensus_5727#1 AGCATTGTTGCAACTGTGTCTACCTCCATTCCTAATTGCATTAGTAGCTCCCAGGGC--- 197 * * ** **** * * * * ** ** ** * ** consensus_5727#0 CACAGAAGTAGCAAAGTGG-ATGGAGCGCTTTGATTGCATCGTTGTTGGTCCTGGCCTTG 537 consensus_5727#1 CAAGGATAGACCAGATTGGTGTTGATAACTCATCCTGTATTTCTGAAGATCTACAGTTTG 257 ** ** * ** * *** * ** ** ** ** ** * ** *** consensus_5727#0 GAAGGGACTCATTTCTTC-TGGACTGTGTAAGTAATATCATGAGACATGCACGGCAGGCA 596 consensus_5727#1 AAATTATAAAGTTCCTTGATAGACTGTGTAAGTAATATCATGAGACATGCACGGCAGGCA 317 ** ** *** * *************************************** consensus_5727#0 AATATTCCAACAGTCGTTGACGGGGATGGCCTTTTCCTTATAACCAATAACCTTAGTCTT 656 consensus_5727#1 AATATTCCAACAGTCGTTGACGGGGATGGCCTTTTCCTTATAACCAATAACCTTAGTCTT 377 ************************************************************ consensus_5727#0 GTTGAGGGTAACTTGCTTGCCATCCTAACACCAAATGTATACGAGTACAAACGTCTTGTC 716 consensus_5727#1 GTTGAGGGTAACTTGCTTGCCATCCTAACACCAAAT------------------------ 413 ************************************ consensus_5727#0 CAGAAGGTTCTTAACTGTGAAGTAAATGAGGAAAACGCTTCTGAACAACTTACTGCACTA 776 consensus_5727#1 ------------------------------------------------------------ consensus_5727#0 TGCCAAAAAAATCGGTGGCATAACCATCATGCGGAAAGGAAAAGCAGATATAATCAGTGA 836 consensus_5727#1 ------------------------------------------------------------ consensus_5727#0 TGGCAAAACTGTAACACAAGTAAGTACCTTTGGTTCCCCAAGGAGATGTGGTGGTCAAGG 896 consensus_5727#1 ------------------------------------------------------------ consensus_5727#0 TGACATTCTTTCAGGAAGTGTTGCAGTATTTGCATCATGGGCACGTCACTTTCTCCTGAC 956 consensus_5727#1 ------------------------------------------------------------ consensus_5727#0 GAATGAGTACCCTACAGAGAAGAGCGTGAATCCGATGATGCTTGGGTGCATTGCTGGCTC 1016 consensus_5727#1 ------------------------------------------------------------ consensus_5727#0 TCTACTACTTAGGAAAGCTGCATCACATGCTTTTGAGAAGAACAAGAGATCAACTGTCAC 1076 consensus_5727#1 ------------------------------------------------------------ consensus_5727#0 CACTGACATCATTGAGTTACTGGGCAAAAGCTTAGAAGATATATGCCCTGCTGGTCATTA 1136 consensus_5727#1 ------------------------------------------------------------ consensus_5727#0 GTTTAGATCTTTACCATCATTGGTGGTACGGCGCCTTAGCACCTGTAATAATGGTAATCC 1196 consensus_5727#1 ------------------------------------------------------------ consensus_5727#0 ATATGTTCGGATACCAGTCTCTCCCTGCTTAATGTACATGTTTCTTGACTGAAAAGATGG 1256 consensus_5727#1 ------------------------------------------------------------ consensus_5727#0 TGTTACAATGCTTGGTTTTGTTTAGCCTCCGTTTTGCTCAGAAGAATTCTACAGAATGAA 1316 consensus_5727#1 ------------------------------------------------------------ consensus_5727#0 TAATGAATTGCCCCATAAATGGGGCT 1342 consensus_5727#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||