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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_573#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence
[CCGCTCCCCACCGCCGCGGCGGAGGCGGCCGCCGCCGGCGGCGACGGCGAGGCCTACCGGATCCGGCCGCTGGAGCTCGCCGACATCTCCAGGGGGTTTCTGGGCCTCCTCAACCAGCTCTCCCCCTCGCCGCCCCTCACGGAGGAGGCCTTCCGCGCGCGGTTCGAGGAGCTCGCGGCGCTGGGCGCCGACCACCTCGTCCTCGTCGCGGAGGACGCCGCCACGGGCCGCCTCGCCGCCGCGGGGGCCGTGCTCGTGGAGCGCAAGTTCATACGGCGGTGCGGCCGGGTGGGGCACGTCGAGGACGTCGTGGTGGACGCCGCCGCGCGCGGCCGCGGGCTCGGGGAGCGCGTCGTGCGCCGCCTCGTGGAGCACGCGAGGGGGAGGGGTTGCTACAAGGTCATCATCAACTGCACCCCGGAGCTGACGGGGTTCTACGCCAAGTGCGGGTTCGTGGAGAAGAACGTCCAGATGGGGCTCTACTTCTGAATTCTGATCTAGGTTTCGTCTTCTTGGATCTCTCTGCCTACTACTTGTTGTACTTAGTTAATAAGGAATTTTATGTCAGTTATTGCTCCTTGTATGGATGGATGGATCACTGATCAATGTGGCTAATTCCATTTGCATTGCCAAGATGTGCAAGTTTATTTAATTGAATGGATTGTTCTCTGCATTTATGTGCAAATCTCATTCTTGCAAATGATTTCAATGAGTAAAA]
[+] EMBL AK063214 [CCGCTCCCCACCGCCGCGGCGGAGGCGGCCGCCGCCGGCGGCGACGGCGAGGCCTACCGGATCCGGCCGCTGGAGCTCGCCGACATCTCCAGGGGGTTTCTGGGCCTCCTCAACCAGCTCTCCCCCTCGCCGCCCCTCACGGAGGAGGCCTTCCGCGCGCGGTTCGAGGAGCTCGCGGCGCTGGGCGCCGACCACCTCGTCCTCGTCGCGGAGGACGCCGCCACGGGCCGCCTCGCCGCCGCGGGGGCCGTGCTCGTGGAGCGCAAGTTCATACGGCGGTGCGGCCGGGTGGGGCACGTCGAGGACGTCGTGGTGGACGCCGCCGCGCGCGGCCGCGGGCTCGGGGAGCGCGTCGTGCGCCGCCTCGTGGAGCACGCGAGGGGGAGGGGTTGCTACAAGGTCATCATCAACTGCACCCCGGAGCTGACGGGGTTCTACGCCAAGTGCGGGTTCGTGGAGAAGAACGTCCAGATGGGGCTCTACTTCTGAATTCTGATCTAGGTTTCGTCTTCTTGGATCTCTCTGCCTACTACTTGTTGTACTTAGTTAATAAGGAATTTTATGTCAGTTATTGCTCCTTGTATGGATGGATGGATCACTGATCAATGTGGCTAATTCCATTTGCATTGCCAAGATGTGCAAGTTTATTTAATTGAATGGATTGTTCTCTGCATTTATGTGCAAATCTCATTCTTGCAAATGATTTCAATGAGTAAAA]
consensusID : consensus_573#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence
[GCCGTCGCGGAGACCGGCTGTTCCGTCCAAATCCGTCGCCTGGAGGCGACAGACCACGAGAAGGGATTCGTGGCCCTCCTCTCGCAGCTCTCCGCCTGCCCGGACCTCACCGCGTCCGAGTTCGCCGCGTGCTTCGCCGACCTCGCGGCCCTCGGCGACGACCACGTCATCCTCGTGGCCGAGGACCCCGCCGCCCCGGAGAGTCGGATCCTCGCCACGGGGTGCCTCTTCGTGGAGCGCAAGTTCCTGCGCGGCGGCGGGAAGGTGGGGCACGTGGAGGACGTCGTGGTCGACGCCGCCGCGCGCGGCCGCGGGCTCGGGCTCCGCGTCGTGCGTCGCCTCGTGGAGATCGCCAAGGAGGCCGGATGCTACAAGGTCATCCTCGACTGCACGCCCGAGCTACGCGCGTACTATGCCAAGTGCGGATTCGTGGAGAAGGGGGTTCAGATGGCAATCTACTTCTGAATTCTGATCCATAGGTATATGTAATTGTGCATTTCAATGTTTCATCTTGTCATGACATTACGCTGTAGTTATTATGATTAAATTTTGGAGTACTTGATTTCATTATTTTGTACTTGTTTCCGATTGAGAGTTCTACTTGTAGAACGACAACTTTGGTGATATGTTGCGTGATTAGCTGTGATT]
[+] EMBL AK063075 [GCCGTCGCGGAGACCGGCTGTTCCGTCCAAATCCGTCGCCTGGAGGCGACAGACCACGAGAAGGGATTCGTGGCCCTCCTCTCGCAGCTCTCCGCCTGCCCGGACCTCACCGCGTCCGAGTTCGCCGCGTGCTTCGCCGACCTCGCGGCCCTCGGCGACGACCACGTCATCCTCGTGGCCGAGGACCCCGCCGCCCCGGAGAGTCGGATCCTCGCCACGGGGTGCCTCTTCGTGGAGCGCAAGTTCCTGCGCGGCGGCGGGAAGGTGGGGCACGTGGAGGACGTCGTGGTCGACGCCGCCGCGCGCGGCCGCGGGCTCGGGCTCCGCGTCGTGCGTCGCCTCGTGGAGATCGCCAAGGAGGCCGGATGCTACAAGGTCATCCTCGACTGCACGCCCGAGCTACGCGCGTACTATGCCAAGTGCGGATTCGTGGAGAAGGGGGTTCAGATGGCAATCTACTTCTGAATTCTGATCCATAGGTATATGTAATTGTGCATTTCAATGTTTCATCTTGTCATGACATTACGCTGTAGTTATTATGATTAAATTTTGGAGTACTTGATTTCATTATTTTGTACTTGTTTCCGATTGAGAGTTCTACTTGTAGAACGACAACTTTGGTGATATGTTGCGTGATTAGCTGTGATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_573#0 CCGCTCCCCACCGCCGCGGCGGAGGCGGCCGCCGCCGGCGGCGACGGCGAGGCCTACCGG 60
consensus_573#1 ------------------------------GCCGTCGCGGAGACCGGCTGTTCCGTCCAA 30
**** ** * **** ** **
consensus_573#0 ATCCGGCCGCTGGAGCTCGCCGACATCTCCAGGGGGTTTCTGGGCCTCCTCAACCAGCTC 120
consensus_573#1 ATCCGTCGCCTGGAGGCGACAGACCACGAGAAGGGATTCGTGGCCCTCCTCTCGCAGCTC 90
***** * ****** * *** * * *** ** *** ******* ******
consensus_573#0 TCCCCCTCGCCGCCCCTCACGGAGGAGGCCTTCCGCGCGCGGTTCGAGGAGCTCGCGGCG 180
consensus_573#1 TCCGCCTGCCCGGACCTCACCGCGTCCGAGTTCGCCGCGTGCTTCGCCGACCTCGCGGCC 150
*** *** *** ****** * * * *** **** * **** ** ********
consensus_573#0 CTGGGCGCCGACCACCTCGTCCTCGTCGCGGAGGACGCCGCCAC------GGGCCGCCTC 234
consensus_573#1 CTCGGCGACGACCACGTCATCCTCGTGGCCGAGGACCCCGCCGCCCCGGAGAGTCGGATC 210
** **** ******* ** ******* ** ****** ***** * * * ** **
consensus_573#0 GCCGCCGCGGGGGCCGTGCTCGTGGAGCGCAAGTTCATACGGCGGTGCGGCCGGGTGGGG 294
consensus_573#1 CTCGCCACGGGGTGCCTCTTCGTGGAGCGCAAGTTCCTGCGCGGCGGCGGGAAGGTGGGG 270
**** ***** * * ***************** * ** * **** *******
consensus_573#0 CACGTCGAGGACGTCGTGGTGGACGCCGCCGCGCGCGGCCGCGGGCTCGGGGAGCGCGTC 354
consensus_573#1 CACGTGGAGGACGTCGTGGTCGACGCCGCCGCGCGCGGCCGCGGGCTCGGGCTCCGCGTC 330
***** ************** ****************************** ******
consensus_573#0 GTGCGCCGCCTCGTGGAGCACGCGAGGGGGAGGGGTTGCTACAAGGTCATCATCAACTGC 414
consensus_573#1 GTGCGTCGCCTCGTGGAGATCGCCAAGGAGGCCGGATGCTACAAGGTCATCCTCGACTGC 390
***** ************ *** * ** * ** *************** ** *****
consensus_573#0 ACCCCGGAGCTGACGGGGTTCTACGCCAAGTGCGGGTTCGTGGAGAAGAACGTCCAGATG 474
consensus_573#1 ACGCCCGAGCTACGCGCGTACTATGCCAAGTGCGGATTCGTGGAGAAGGGGGTTCAGATG 450
** ** ***** * ** *** *********** ************ ** ******
consensus_573#0 GGGCTCTACTTCTGAATTCTGATC--TAGGTTT-CGTCTTCTTGGATCTCTCTGCCTACT 531
consensus_573#1 GCAATCTACTTCTGAATTCTGATCCATAGGTATATGTAATTGTGCATTTCAATGTTT-CA 509
* ******************** ***** * ** * ** ** ** ** * *
consensus_573#0 ACTTGTTGTAC--TTAGTTAATAAGGAATTTTATGTCAGTTATTGCTCCTTGTATGGATG 589
consensus_573#1 TCTTGTCATGACATTACGCTGTAGTTATTATGATTAAATTTTGGAGTACTTGATTTCATT 569
***** * *** ** * * * ** * ** * **** * **
consensus_573#0 GATGGATCACTGATCAATGTGGCTAATTCCATTTGCATTGCCAAGATGTGCAAGTTTATT 649
consensus_573#1 ATTTTGTACTTGTTTCCGATTGAGAGTTCTACTTGTAGAACGACAACTTTGGTGATATGT 629
* * ** * * * * *** * *** * * * * * * * *
consensus_573#0 TAATTGAATGGATTGTTCTCTGCATTTATGTGCAAATCTCATTCTTGCAAATGATTTCAA 709
consensus_573#1 TGCGTGATTAG-CTGTGATT---------------------------------------- 648
* *** * * *** *
consensus_573#0 TGAGTAAAA 718
consensus_573#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||