These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5731#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1828 fasta sequence [GCACTTGCACTAGTTGAGTTCTCTTCTCCCTCCCGCACGGCACCATGATCTCACAGTGTTCCGGCCATGACGTCATGCAGTGGGAGTGGGACGTCCCACGGCGGCGTCGTTGCGCTCGCCGGCGGCGGCCGACACCCTGCCGGACGCCGGCTCAGCTGGTCGCCGGAATCATGAGGCTCCCTCCTCGCCGGCCTTTTCTTCAGGGGTTAGAGAAACGGTGACCGGGGTGGAGACGAACGACGACGGCGCCGAGAGAGGGGCGGAGCCGGCGGAGCGCGACAACGCCGCGCCGGCCGCCGCGGCAGCCATCTCCGGCGGCGATCAAGAAGCACAACCAGGTACAGCAGCCGTGGATGCGGCGCCGGGCCACGACAAATCCTTGCGGACCGCCGCCGCCACCGGAACGTCTCCTCCACGGCACGAACAACCAGGGGAGACCACGACGCGTGCGGATTCGGTAGACCAGCCGCGACATCCGCTGTGCGACTTGTCCGACCACCGCACCGACGTCTGCGACCTCGCCGGCGACATCCGCATGGACGCCAACGCCTCGGCGTTCGTCGTCGTCGTCGACCCGGCGGTCGGCGCGGACGGGCCGACGTACAAGGTCCGGCCGTACCCGCGGAAGGGCGACGCCACGAGCATGGGCCGCGTCACCGAGATCACGGTGCGCACGACCGCGGCGGTCGTGTTCTCGATCAGCGGGTACACGGGCAACCTGTTCCACGACTTCACCGACGTGATCGTCCCGCTGTACAACACCGCGGCGCGCTACTGCGGCGACGTGCAGCTCGTCGTGACGGACGGCAACGCGGCCACGCGGCGGTGGCTCGCCAGGTACGGCGCTGTCCTGCGCGGTCTGTCGCGCCACGTGCCGCTTGACCTCGCCGCCGAGGCCGCCGCCGGCGGCGGGGAGGTGCACTGCTTCGGGCACACCGTGGTCGGCCTGCGCGCGCACGGGGAGCTCATCATCGACCGCGAACGCAGCCCGGACGGTCTCGGGATGCCGGACTTCACGCGGTTCCTCCGCCGCGCGCTCTCGCTGCCCCGCGACGCGCCCACGCGCCCCGGCGGCGGCCACGGCGACGCCACGAAGCCCCAACCCCGCCCGCGCCTTCTCATCATCTCCCGCCGCGGAACACGGTTCTACTCAACACCGACGCCGTGGCGCGCGCCGCGGAGCAGGTCGGCTTCGAGGCCGTGGCAAGCGAGCTGGACATGGCCGGCGCGGACCACGACGACGTCGCGCGCGTGGCACGGCTCGTCAACTCGTTCGACGCGGTGGTGGGCGTGCACGGCGCCGGGCTGACGAACATGGTGTTCCTGCCACCCGGCGCCGCGGCGGTGCAGATCGTGCCGTGGGGCGGTCTCCGGTGGCTGGCGCGGGCGGACTTCGGCGAGCCGGCGGTGGCGATGGGGCTCAGGTACATCCAGTACGAGGTCGCCGCCGGCGAGAGCACGCTCAAGGAC-AAGTA-CCCGCGAGA-CCACGAGATATTCACCAA--CCCGACGGCGCTGCACAAGAAGGGGTTCACGTTCATGAGGCACACGTTTCTGAACGGCCAGGACATCATCGTCGACATCGACCGCTTCAAGCCGGTGTTGCTCCGCGCACTCAACAGCCTCGCGCGCTAACCTAGGGTCTGTTTGGCAGAGCTCTAGCGCAAGTCTAATGGATGAGTCTAGGGTCCGTTCTGCATTCGGCCTAAGCACGCAAACGTGTTCGGTCTGGCCCACATGCGTCTTGCCCATCTTGAGACACTGTGCTAGAAAAAATTGACACAGAATTTACATAAAAAACTTTTAATATAGGAACATTTTATATAAAAAA] [+] EMBL AK109804 [GCACTTGCACTAGTTGAGTTCTCTTCTCCCTCCCGCACGGCACCATGATCTCACAGTGTTCCGGCCATGACGTCATGCAGTGGGAGTGGGACGTCCCACGGCGGCGTCGTTGCGCTCGCCGGCGGCGGCCGACACCCTGCCGGACGCCGGCTCAGCTGGTCGCCGGAATCATGAGGCTCCCTCCTCGCCGGCCTTTTCTTCAGGGGTTAGAGAAACGGTGACCGGGGTGGAGACGAACGACGACGGCGCCGAGAGAGGGGCGGAGCCGGCGGAGCGCGACAACGCCGCGCCGGCCGCCGCGGCAGCCATCTCCGGCGGCGATCAAGAAGCACAACCAGGTACAGCAGCCGTGGATGCGGCGCCGGGCCACGACAAATCCTTGCGGACCGCCGCCGCCACCGGAACGTCTCCTCCACGGCACGAACAACCAGGGGAGACCACGACGCGTGCGGATTCGGTAGACCAGCCGCGACATCCGCTGTGCGACTTGTCCGACCACCGCACCGACGTCTGCGACCTCGCCGGCGACATCCGCATGGACGCCAACGCCTCGGCGTTCGTCGTCGTCGTCGACCCGGCGGTCGGCGCGGACGGGCCGACGTACAAGGTCCGGCCGTACCCGCGGAAGGGCGACGCCACGAGCATGGGCCGCGTCACCGAGATCACGGTGCGCACGACCGCGGCGGTCGTGTTCTCGATCAGCGGGTACACGGGCAACCTGTTCCACGACTTCACCGACGTGATCGTCCCGCTGTACAACACCGCGGCGCGCTACTGCGGCGACGTGCAGCTCGTCGTGACGGACGGCAACGCGGCCACGCGGCGGTGGCTCGCCAGGTACGGCGCTGTCCTGCGCGGTCTGTCGCGCCACGTGCCGCTTGACCTCGCCGCCGAGGCCGCCGCCGGCGGCGGGGAGGTGCACTGCTTCGGGCACACCGTGGTCGGCCTGCGCGCGCACGGGGAGCTCATCATCGACCGCGAACGCAGCCCGGACGGTCTCGGGATGCCGGACTTCACGCGGTTCCTCCGCCGCGCGCTCTCGCTGCCCCGCGACGCGCCCACGCGCCCCGGCGGCGGCCACGGCGACGCCACGAAGCCCCAACCCCGCCCGCGCCTTCTCATCATCTCCCGCCGCGGAACACGGTTCTACTCAACACCGACGCCGTGGCGCGCGCCGCGGAGCAGGTCGGCTTCGAGGCCGTGGCAAGCGAGCTGGACATGGCCGGCGCGGACCACGACGACGTCGCGCGCGTGGCACGGCTCGTCAACTCGTTCGACGCGGTGGTGGGCGTGCACGGCGCCGGGCTGACGAACATGGTGTTCCTGCCACCCGGCGCCGCGGCGGTGCAGATCGTGCCGTGGGGCGGTCTCCGGTGGCTGGCGCGGGCGGACTTCGGCGAGCCGGCGGTGGCGATGGGGCTCAGGTACATCCAGTACGAGGTCGCCGCCGGCGAGAGCACGCTCAAGGAC AAGTA CCCGCGAGA CCACGAGATATTCACCAA CCCGACGGCGCTGCACAAGAAGGGGTTCACGTTCATGAGGCACACGTTTCTGAACGGCCAGGACATCATCGTCGACATCGACCGCTTCAAGCCGGTGTTGCTCCGCGCACTCAACAGCCTCGCGCGCTAACCTAGGGTCTGTTTGGCAGAGCTCTAGCGCAAGTCTAATGGATGAGTCTAGGGTCCGTTCTGCATTCGGCCTAAGCACGCAAACGTGTTCGGTCTGGCCCACATGCGTCTTGCCCATCTTGAGACACTGTGCTAGAAAAAATTGACACAGAATTTACATAAAAAACTTTTAATATAGGAA ] [+] EMBL C97743 [ GGACAAAGTACCCCGCGAGACCCACGAGATATTCACCAAACCCCGAC GCGCTGCACAAGAAGGGGTTCACGTTCATGAGGCACACGTTTCTGAACGGCCAGGACATCATCGTCGACATCGACCGCTTCAAGCCGGTGGT TTCCGCGCACTCAACAGCCTCGCGCGCTAACCTAGGGTCTGTTTGGCAGAGCTCTAGCGCAAGTCTAATGGATGAGTCTAGGGTCCGTTCTGCATTCGGCCTAAGCACGCAAACGTGTTCGGTCTGGCCCACATGCGTCTTGCCCATCTTGAGACACTGTGCTAGAAAAAATTGACACAGAATTTACATAAAAAACTTTTAATATAGGAACATTTTATATAAAAAA] consensusID : consensus_5731#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [CACGGGGGACGTTCAGGCGGCGGCTGCTGACCGTCACCGCCGGCTGCTTCCTCTTCTTCATCGTCTTCCTCCTCTCCTCCCGCCACGACGCCATTGTTCTCCTCGACACCCGTCTGGGAGTGGGACGTCCCACGGCGGCGTCGTTGCGCTCGCCGGCGGCGGCCGACACCCTGCCGGACGCCGGCTCAGCTGGTCGCCGGAATCATGAGGCTCCCTCCTCGCCGGCCTTTTCTTCAGGGGTTAGAGAAACGGTGACCGGGGTGGAGACGA] [+] EMBL AU093337 [CACGGGGGACGTTCAGGCGGCGGCTGCTGACCGTCACCGCCGGCTGCTTCCTCTTCTTCATCGTCTTCCTCCTCTCCTCCCGCCACGACGCCATTGTTCTCCTCGACACCCGTCTGGGAGTGGGACGTCCCACGGCGGCGTCGTTGCGCTCGCCGGCGGCGGCCGACACCCTGCCGGACGCCGGCTCAGCTGGTCGCCGGAATCATGAGGCTCCCTCCTCGCCGGCCTTTTCTTCAGGGGTTAGAGAAACGGTGACCGGGGTGGAGACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5731#0 ------------------------------GCACTTGCACTAGTTGAGTTCTCTTCTCCC 30 consensus_5731#1 CACGGGGGACGTTCAGGCGGCGGCTGCTGACCGTCACCGCCGGCTGCTTCCTCTTCTTCA 60 * * * * ** * ******* * consensus_5731#0 TCCCGCACGGCACCATGATCT--CACAGTGTT-CCGGCCATGACGTCATGCAG-TGGGAG 86 consensus_5731#1 TCGTCTTCCTCCTCTCCTCCCGCCACGACGCCATTGTTCTCCTCGACACCCGTCTGGGAG 120 ** * * * * *** * * * ** ** * ****** consensus_5731#0 TGGGACGTCCCACGGCGGCGTCGTTGCGCTCGCCGGCGGCGGCCGACACCCTGCCGGACG 146 consensus_5731#1 TGGGACGTCCCACGGCGGCGTCGTTGCGCTCGCCGGCGGCGGCCGACACCCTGCCGGACG 180 ************************************************************ consensus_5731#0 CCGGCTCAGCTGGTCGCCGGAATCATGAGGCTCCCTCCTCGCCGGCCTTTTCTTCAGGGG 206 consensus_5731#1 CCGGCTCAGCTGGTCGCCGGAATCATGAGGCTCCCTCCTCGCCGGCCTTTTCTTCAGGGG 240 ************************************************************ consensus_5731#0 TTAGAGAAACGGTGACCGGGGTGGAGACGAACGACGACGGCGCCGAGAGAGGGGCGGAGC 266 consensus_5731#1 TTAGAGAAACGGTGACCGGGGTGGAGACGA------------------------------ 270 ****************************** consensus_5731#0 CGGCGGAGCGCGACAACGCCGCGCCGGCCGCCGCGGCAGCCATCTCCGGCGGCGATCAAG 326 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 AAGCACAACCAGGTACAGCAGCCGTGGATGCGGCGCCGGGCCACGACAAATCCTTGCGGA 386 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 CCGCCGCCGCCACCGGAACGTCTCCTCCACGGCACGAACAACCAGGGGAGACCACGACGC 446 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 GTGCGGATTCGGTAGACCAGCCGCGACATCCGCTGTGCGACTTGTCCGACCACCGCACCG 506 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 ACGTCTGCGACCTCGCCGGCGACATCCGCATGGACGCCAACGCCTCGGCGTTCGTCGTCG 566 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 TCGTCGACCCGGCGGTCGGCGCGGACGGGCCGACGTACAAGGTCCGGCCGTACCCGCGGA 626 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 AGGGCGACGCCACGAGCATGGGCCGCGTCACCGAGATCACGGTGCGCACGACCGCGGCGG 686 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 TCGTGTTCTCGATCAGCGGGTACACGGGCAACCTGTTCCACGACTTCACCGACGTGATCG 746 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 TCCCGCTGTACAACACCGCGGCGCGCTACTGCGGCGACGTGCAGCTCGTCGTGACGGACG 806 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 GCAACGCGGCCACGCGGCGGTGGCTCGCCAGGTACGGCGCTGTCCTGCGCGGTCTGTCGC 866 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 GCCACGTGCCGCTTGACCTCGCCGCCGAGGCCGCCGCCGGCGGCGGGGAGGTGCACTGCT 926 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 TCGGGCACACCGTGGTCGGCCTGCGCGCGCACGGGGAGCTCATCATCGACCGCGAACGCA 986 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 GCCCGGACGGTCTCGGGATGCCGGACTTCACGCGGTTCCTCCGCCGCGCGCTCTCGCTGC 1046 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 CCCGCGACGCGCCCACGCGCCCCGGCGGCGGCCACGGCGACGCCACGAAGCCCCAACCCC 1106 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 GCCCGCGCCTTCTCATCATCTCCCGCCGCGGAACACGGTTCTACTCAACACCGACGCCGT 1166 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 GGCGCGCGCCGCGGAGCAGGTCGGCTTCGAGGCCGTGGCAAGCGAGCTGGACATGGCCGG 1226 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 CGCGGACCACGACGACGTCGCGCGCGTGGCACGGCTCGTCAACTCGTTCGACGCGGTGGT 1286 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 GGGCGTGCACGGCGCCGGGCTGACGAACATGGTGTTCCTGCCACCCGGCGCCGCGGCGGT 1346 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 GCAGATCGTGCCGTGGGGCGGTCTCCGGTGGCTGGCGCGGGCGGACTTCGGCGAGCCGGC 1406 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 GGTGGCGATGGGGCTCAGGTACATCCAGTACGAGGTCGCCGCCGGCGAGAGCACGCTCAA 1466 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 GGACAAGTACCCGCGAGACCACGAGATATTCACCAACCCGACGGCGCTGCACAAGAAGGG 1526 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 GTTCACGTTCATGAGGCACACGTTTCTGAACGGCCAGGACATCATCGTCGACATCGACCG 1586 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 CTTCAAGCCGGTGTTGCTCCGCGCACTCAACAGCCTCGCGCGCTAACCTAGGGTCTGTTT 1646 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 GGCAGAGCTCTAGCGCAAGTCTAATGGATGAGTCTAGGGTCCGTTCTGCATTCGGCCTAA 1706 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 GCACGCAAACGTGTTCGGTCTGGCCCACATGCGTCTTGCCCATCTTGAGACACTGTGCTA 1766 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 GAAAAAATTGACACAGAATTTACATAAAAAACTTTTAATATAGGAACATTTTATATAAAA 1826 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 AA 1828 consensus_5731#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||