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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5739#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 812 fasta sequence
[ACAGCGCAAGAAAATGGCGGGTGCCATGACCATGAGTCGCCGCCGTCTCTCCCACGCGCTCCTCCTCGTGCTCGCGATCCTCCCCAACCTGGCCGCTCTCGCCGTCGCCGCCGGCGGCGGCAGCGGAGGCGGTGGCTTCTTCCCGCACCGGTCCCTCCTCCAGTCCTCCAGCTGCCAGCCGAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTGCCAGGACGGCGTCCAGTACATGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCACCGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCGGCGCGCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGGGTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGGCGCGTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCACAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGCGCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGACGACGACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGCCGTATAATTTCCCATTAATAAGCTTATATATATTCCCTAACAGTGATGTATCGTAATTTTTCTTTTGTAAAATTAAACACCTCTTGATATATCAAGTAATAAAGAGGGAAT]
[+] EMBL AK102387 [ACAGCGCAAGAAAATGGCGGGTGCCATGACCATGAGTCGCCGCCGTCTCTCCCACGCGCTCCTCCTCGTGCTCGCGATCCTCCCCAACCTGGCCGCTCTCGCCGTCGCCGCCGGCGGCGGCAGCGGAGGCGGTGGCTTCTTCCCGCACCGGTCCCTCCTCCAGTCCTCCAGCTGCCAGCCGAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTGCCAGGACGGCGTCCAGTACATGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCACCGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCGGCGCGCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGGGTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGGCGCGTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCACAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGCGCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGACGACGACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGCCGTATAATTTCCCATTAATAAGCTTATATATATTCCCTAACAGTGATGTATCGTAATTTTTCTTTTGTAAAATTAAACACCTCTTGATATATCAAGTAATAAAGAGGGAAT]
[+] EMBL CB628880 [ GCCATGACCATGAGTCGCCGCCGTCTCTCCCACGCGCTCCTCCTCGTGCTCGCGATCCTCCCCAACCTGGCCGCTCTCGCCGTCGCCGCCGGCGGCGGCAGCGGAGGCGGTGGCTTCTTCCCGCACCGGTCCCTCCTCCAGTCCTCCAGCTGCCAGCCGAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTGCCAGGACGGCGTCCAGTACACGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCACCGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCAGCGCACCGTCGTGCACGGGGAGGTTCTACCACGACGGCCAACTGGTGGTGGCGCTGTCCACGGGGTGGTTCGACGGGAGGAGCCCGTGCAAAAAGGACGTCCTAATTGGGGGGAGCGGTAGAGCGTCCGTGAGGGCGATGGTCCTCTACCACTGCCACTCCCATCGGAGATGCTACAGAGACCACAAATGCCAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGGGTGGGACGCGC ]
consensusID : consensus_5739#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[GCCGAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTGCCAGGACGGCGTCCAGTACACGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCACCGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCAGCGCGCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGGGTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGGCGCGTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCACAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGCGCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGACGACGACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGACGTATAATTTCCCATTAATAAGCTTATATATATTCCCTAACAGTGATTTTACAGTCTCTGATGAGATATCGAGATGTATCGTAATTTTTCTTTTGTAAAATTAAGCATCTCTTGATATATCAAGCAATAAAGAGGGAATACTAAATTATACTAAGAGA]
[-] EMBL CB628881 [GCCGAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTGCCAGGACGGCGTCCAGTACACGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCACCGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCAGCGCGCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGGGTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGGCGCGTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCACAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGCGCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGACGACGACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGACGTATAATTTCCCATTAATAAGCTTATATATATTCCCTAACAGTGATTTTACAGTCTCTGATGAGATATCGAGATGTATCGTAATTTTTCTTTTGTAAAATTAAGCATCTCTTGATATATCAAGCAATAAAGAGGGAATACTAAATTATACTAAGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5739#0 ACAGCGCAAGAAAATGGCGGGTGCCATGACCATGAGTCGCCGCCGTCTCTCCCACGCGCT 60
consensus_5739#1 ------------------------------------------------------------
consensus_5739#0 CCTCCTCGTGCTCGCGATCCTCCCCAACCTGGCCGCTCTCGCCGTCGCCGCCGGCGGCGG 120
consensus_5739#1 ------------------------------------------------------------
consensus_5739#0 CAGCGGAGGCGGTGGCTTCTTCCCGCACCGGTCCCTCCTCCAGTCCTCCAGCTGCCAGCC 180
consensus_5739#1 ---------------------------------------------------------GCC 3
***
consensus_5739#0 GAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTG 240
consensus_5739#1 GAGCGGCGCCATCACCGGAACGTCCGGCGACTGCAACGCGGACAACGGCTCCGAGTGCTG 63
************************************************************
consensus_5739#0 CCAGGACGGCGTCCAGTACATGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCAC 300
consensus_5739#1 CCAGGACGGCGTCCAGTACACGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCAC 123
******************** ***************************************
consensus_5739#0 CGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCGGCGC 360
consensus_5739#1 CGGCACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCAGCGC 183
******************************************************* ****
consensus_5739#0 GCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGG 420
consensus_5739#1 GCCGTCCTGCACGGGGAGGTTCTACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGG 243
************************************************************
consensus_5739#0 GTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGGCGC 480
consensus_5739#1 GTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATCCGGGCGAGCGGCGGCGC 303
************************************************************
consensus_5739#0 GTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCA 540
consensus_5739#1 GTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCA 363
************************************************************
consensus_5739#0 CAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGC 600
consensus_5739#1 CAACTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGC 423
************************************************************
consensus_5739#0 GCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGACGACG 660
consensus_5739#1 GCTGGGGCTCAACAAGGACGACGGCGAGGCCCAGATCACCTGGTCCGATGCTTGACGACG 483
************************************************************
consensus_5739#0 ACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGCCGTATAATTTCCCATTAAT 720
consensus_5739#1 ACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGACGTATAATTTCCCATTAAT 543
**************************************** *******************
consensus_5739#0 AAGCTTATATATATTCCCTAACAGTGAT----------------------------GTAT 752
consensus_5739#1 AAGCTTATATATATTCCCTAACAGTGATTTTACAGTCTCTGATGAGATATCGAGATGTAT 603
**************************** ****
consensus_5739#0 CGTAATTTTTCTTTTGTAAAATTAAACACCTCTTGATATATCAAGTAATAAAGAGGGAAT 812
consensus_5739#1 CGTAATTTTTCTTTTGTAAAATTAAGCATCTCTTGATATATCAAGCAATAAAGAGGGAAT 663
************************* ** **************** **************
consensus_5739#0 -------------------
consensus_5739#1 ACTAAATTATACTAAGAGA 682
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||