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Oryza sativa
cluster # 5746 cluster # 5746       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5746#0 length = 867 sequences # 2  
consensus_5746#1 length = 683 sequences # 1  

consensusID : consensus_5746#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 867
fasta sequence
                              [GAGTAGAAAGGTTTTGAAGGTCCATCAGAGAACAGTGCTGTCCTTCAGACAAGGCTAAGGCAGATACGCAACTTCTTATTTATTCTATTTGTATCACTTGGTGTTCCTGTTCTGAACATGGGAGATGAATGTGGGCACTCTGCTGCTGGTTCAGTATCATACATTGATAGATGGCCTCTGAACTGGAGAGGCATGAAGACAACATTTGTTAAGGAAGTGACCGGATTCATTTCATTTCTAACTGCACTCAGGAGTCGGCGAGGCGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAGAATATACATTGGTATGGGAGCGATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAACTTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAGGCGACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCCTGCTCTTGCAGAAGGATCCGTGTGGTTGCGCTTGGTTGACACATCGCTTGCATTTCCAGGTTTCTTTGCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAAGCGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTCTGCAGTCAAAATAAGGATCACAAACCTATGATAAGTACAAATTTTTGNGTATATCTACAGTCAGAAACCTGAGGTCCCAATAAGTTGTAGTGGTTGNATATGAGAATGGTAATGATAATAAAGATGNATCATTTTNCAGATGGATGGTACTCCTATACAGGTACCCTCATGGTNCCTGGCAGAGTTAANTGATCCCATACTTGGGGGGGCTNTATTTC]

[+] EMBL CF307987             [GAGTAGAAAGGTTTTGAAGGTCCATCAGAGAACAGTGCTGTCCTTCAGACAAGGCTAAGGCAGATACGCAACTTCTTATTTATTCTATTTGTATCACTTGGTGTTCCTGTTCTGAACATGGGAGATGAATGTGGGCACTCTGCTGCTGGTTCAGTATCATACATTGATAGATGGCCTCTGAACTGGAGAGGCATGAAGACAACATTTGTTAAGGAAGTGACCGGATTCATTTCATTTCTAACTGCACTCAGGAGTCGGCGAGGCGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAGAATATACATTGGTATGGGAGCGATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAACTTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAGGCGACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCCTGCTCTTGCAGAAGGATCCGTGTGGTTGCGCTTGGTTGACACATCGCTTGCATTTCCAGGTTTCTTTGCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAAGCGCATACTTGTGTTC                                                                                                                                                                                                                                                           ]
[+] EMBL CA764197             [         ggtgaaggAGGTCCATCAGAGAACAGTGCTGTCCTTCAGACAAGGCTAAGGCAGATACGCAACTTCTTATTTATTCTATTTGTATCACTTGGTGTTCCTGTTCTGAACATGGGAGATGAATGTGGGCACTCTGCTGCTGGTTCAGTATCATACAAGGATAGAGGGCCTCTGAACTGGAGAGGCATGAAGACAACATTTGTTAAGGAAGTGACCGGATTCATTTCATTTCTAACTGCACTCAGGAGTCGGCGAGGCGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAGAATATACATTGGTATGGGAGCGATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAACTTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAAGCGACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCTTGCTCTTGCAGAAGGATCCGTGTGGTTGCGCTTGGTCGACACATCACTTGCATTTCCAGGTTTCTTTGCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAAGCGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTCTGCAGTCAAAATAAGGATCACAAACCTATGATAAGTACAAATTTTTGNGTATATCTACAGTCAGAAACCTGAGGTCCCAATAAGTTGTAGTGGTTGNATATGAGAATGGTAATGATAATAAAGATGNATCATTTTNCAGATGGATGGTACTCCTATACAGGTACCCTCATGGTNCCTGGCAGAGTTAANTGATCCCATACTTGGGGGGGCTNTATTTC]


>consensus_5746#0 GAGTAGAAAGGTTTTGAAGGTCCATCAGAGAACAGTGCTGTCCTTCAGACAAGGCTAAGG CAGATACGCAACTTCTTATTTATTCTATTTGTATCACTTGGTGTTCCTGTTCTGAACATG GGAGATGAATGTGGGCACTCTGCTGCTGGTTCAGTATCATACATTGATAGATGGCCTCTG AACTGGAGAGGCATGAAGACAACATTTGTTAAGGAAGTGACCGGATTCATTTCATTTCTA ACTGCACTCAGGAGTCGGCGAGGCGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAG AATATACATTGGTATGGGAGCGATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAAC TTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAGGC GACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCCTGCTCTT GCAGAAGGATCCGTGTGGTTGCGCTTGGTTGACACATCGCTTGCATTTCCAGGTTTCTTT GCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAA GCGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTCTGCAGTCAAAA TAAGGATCACAAACCTATGATAAGTACAAATTTTTGNGTATATCTACAGTCAGAAACCTG AGGTCCCAATAAGTTGTAGTGGTTGNATATGAGAATGGTAATGATAATAAAGATGNATCA TTTTNCAGATGGATGGTACTCCTATACAGGTACCCTCATGGTNCCTGGCAGAGTTAANTG ATCCCATACTTGGGGGGGCTNTATTTC



consensusID : consensus_5746#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence
                              [GAGATGAATGGGGGCCCTCTGGTGCTGGTTCAGTATCATACAGGGATAGAGGGCCTTTGAACTGGAGAGGCATGAAGCCACCCTCTGTTAAGGAAGTGGCCGGATTCATTTCATTTCTAACTGCACTCGGGAGTGGGCGAGGTGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAGAATATACATTGGTATGGGAGCCATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAACTTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAAGCGACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCCTGCTCTTGCAGAAGGATCCGTGTGGTTGCGCTTGGTCGACACATCACTTGCATTTCCAGGTTTCTTTGCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAAGCGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTTTGCAGTCAAAATAAGGATCCCAAACCTTTGATAAGTACAAATTTTTGTGTATATCTACAGTCAGAAACCTGAGGTCCCAATAAGTTGTAGTGGTTGTATATGAGAATGTTAATGATAATAAAAGAATGTATCATTTTCCAAAAAAAAAAAAAAAA]

[-] EMBL CA762003             [GAGATGAATGGGGGCCCTCTGGTGCTGGTTCAGTATCATACAGGGATAGAGGGCCTTTGAACTGGAGAGGCATGAAGCCACCCTCTGTTAAGGAAGTGGCCGGATTCATTTCATTTCTAACTGCACTCGGGAGTGGGCGAGGTGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAGAATATACATTGGTATGGGAGCCATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAACTTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAAGCGACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCCTGCTCTTGCAGAAGGATCCGTGTGGTTGCGCTTGGTCGACACATCACTTGCATTTCCAGGTTTCTTTGCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAAGCGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTTTGCAGTCAAAATAAGGATCCCAAACCTTTGATAAGTACAAATTTTTGTGTATATCTACAGTCAGAAACCTGAGGTCCCAATAAGTTGTAGTGGTTGTATATGAGAATGTTAATGATAATAAAAGAATGTATCATTTTCCAAAAAAAAAAAAAAAA]


>consensus_5746#1 GAGATGAATGGGGGCCCTCTGGTGCTGGTTCAGTATCATACAGGGATAGAGGGCCTTTGA ACTGGAGAGGCATGAAGCCACCCTCTGTTAAGGAAGTGGCCGGATTCATTTCATTTCTAA CTGCACTCGGGAGTGGGCGAGGTGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAGA ATATACATTGGTATGGGAGCCATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAACT TTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAAGCG ACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCCTGCTCTTG CAGAAGGATCCGTGTGGTTGCGCTTGGTCGACACATCACTTGCATTTCCAGGTTTCTTTG CAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAAG CGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTTTGCAGTCAAAAT AAGGATCCCAAACCTTTGATAAGTACAAATTTTTGTGTATATCTACAGTCAGAAACCTGA GGTCCCAATAAGTTGTAGTGGTTGTATATGAGAATGTTAATGATAATAAAAGAATGTATC ATTTTCCAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5746#0      GAGTAGAAAGGTTTTGAAGGTCCATCAGAGAACAGTGCTGTCCTTCAGACAAGGCTAAGG 60
consensus_5746#1      ------------------------------------------------------------
                                                                                  

consensus_5746#0      CAGATACGCAACTTCTTATTTATTCTATTTGTATCACTTGGTGTTCCTGTTCTGAACATG 120
consensus_5746#1      ------------------------------------------------------------
                                                                                  

consensus_5746#0      GGAGATGAATGTGGGCACTCTGCTGCTGGTTCAGTATCATACATTGATAGATGGCCTCTG 180
consensus_5746#1      -GAGATGAATGGGGGCCCTCTGGTGCTGGTTCAGTATCATACAGGGATAGAGGGCCTTTG 59
                       ********** **** ***** ********************  ****** ***** **

consensus_5746#0      AACTGGAGAGGCATGAAGACAACATTTGTTAAGGAAGTGACCGGATTCATTTCATTTCTA 240
consensus_5746#1      AACTGGAGAGGCATGAAGCCACCCTCTGTTAAGGAAGTGGCCGGATTCATTTCATTTCTA 119
                      ****************** ** * * ************* ********************

consensus_5746#0      ACTGCACTCAGGAGTCGGCGAGGCGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAG 300
consensus_5746#1      ACTGCACTCGGGAGTGGGCGAGGTGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAG 179
                      ********* ***** ******* ************************************

consensus_5746#0      AATATACATTGGTATGGGAGCGATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAAC 360
consensus_5746#1      AATATACATTGGTATGGGAGCCATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAAC 239
                      ********************* **************************************

consensus_5746#0      TTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAGGC 420
consensus_5746#1      TTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAAGC 299
                      ********************************************************* **

consensus_5746#0      GACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCCTGCTCTT 480
consensus_5746#1      GACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCCTGCTCTT 359
                      ************************************************************

consensus_5746#0      GCAGAAGGATCCGTGTGGTTGCGCTTGGTTGACACATCGCTTGCATTTCCAGGTTTCTTT 540
consensus_5746#1      GCAGAAGGATCCGTGTGGTTGCGCTTGGTCGACACATCACTTGCATTTCCAGGTTTCTTT 419
                      ***************************** ******** *********************

consensus_5746#0      GCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAA 600
consensus_5746#1      GCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAA 479
                      ************************************************************

consensus_5746#0      GCGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTCTGCAGTCAAAA 660
consensus_5746#1      GCGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTTTGCAGTCAAAA 539
                      ************************************************ ***********

consensus_5746#0      TAAGGATCACAAACCTATGATAAGTACAAATTTTTGNGTATATCTACAGTCAGAAACCTG 720
consensus_5746#1      TAAGGATCCCAAACCTTTGATAAGTACAAATTTTTGTGTATATCTACAGTCAGAAACCTG 599
                      ******** ******* ******************* ***********************

consensus_5746#0      AGGTCCCAATAAGTTGTAGTGGTTGNATATGAGAATGGTAATGATAATAAAG--ATGNAT 778
consensus_5746#1      AGGTCCCAATAAGTTGTAGTGGTTGTATATGAGAATGTTAATGATAATAAAAGAATGTAT 659
                      ************************* *********** *************   *** **

consensus_5746#0      CATTTTNCAGATGGATGGTACTCCTATACAGGTACCCTCATGGTNCCTGGCAGAGTTAAN 838
consensus_5746#1      CATTTTCCAAAAAAAAAAAAAAAA------------------------------------ 683
                      ****** ** *   *    *                                        

consensus_5746#0      TGATCCCATACTTGGGGGGGCTNTATTTC 867
consensus_5746#1      -----------------------------
                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)