These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5746#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 867 fasta sequence [GAGTAGAAAGGTTTTGAAGGTCCATCAGAGAACAGTGCTGTCCTTCAGACAAGGCTAAGGCAGATACGCAACTTCTTATTTATTCTATTTGTATCACTTGGTGTTCCTGTTCTGAACATGGGAGATGAATGTGGGCACTCTGCTGCTGGTTCAGTATCATACATTGATAGATGGCCTCTGAACTGGAGAGGCATGAAGACAACATTTGTTAAGGAAGTGACCGGATTCATTTCATTTCTAACTGCACTCAGGAGTCGGCGAGGCGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAGAATATACATTGGTATGGGAGCGATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAACTTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAGGCGACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCCTGCTCTTGCAGAAGGATCCGTGTGGTTGCGCTTGGTTGACACATCGCTTGCATTTCCAGGTTTCTTTGCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAAGCGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTCTGCAGTCAAAATAAGGATCACAAACCTATGATAAGTACAAATTTTTGNGTATATCTACAGTCAGAAACCTGAGGTCCCAATAAGTTGTAGTGGTTGNATATGAGAATGGTAATGATAATAAAGATGNATCATTTTNCAGATGGATGGTACTCCTATACAGGTACCCTCATGGTNCCTGGCAGAGTTAANTGATCCCATACTTGGGGGGGCTNTATTTC] [+] EMBL CF307987 [GAGTAGAAAGGTTTTGAAGGTCCATCAGAGAACAGTGCTGTCCTTCAGACAAGGCTAAGGCAGATACGCAACTTCTTATTTATTCTATTTGTATCACTTGGTGTTCCTGTTCTGAACATGGGAGATGAATGTGGGCACTCTGCTGCTGGTTCAGTATCATACATTGATAGATGGCCTCTGAACTGGAGAGGCATGAAGACAACATTTGTTAAGGAAGTGACCGGATTCATTTCATTTCTAACTGCACTCAGGAGTCGGCGAGGCGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAGAATATACATTGGTATGGGAGCGATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAACTTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAGGCGACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCCTGCTCTTGCAGAAGGATCCGTGTGGTTGCGCTTGGTTGACACATCGCTTGCATTTCCAGGTTTCTTTGCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAAGCGCATACTTGTGTTC ] [+] EMBL CA764197 [ ggtgaaggAGGTCCATCAGAGAACAGTGCTGTCCTTCAGACAAGGCTAAGGCAGATACGCAACTTCTTATTTATTCTATTTGTATCACTTGGTGTTCCTGTTCTGAACATGGGAGATGAATGTGGGCACTCTGCTGCTGGTTCAGTATCATACAAGGATAGAGGGCCTCTGAACTGGAGAGGCATGAAGACAACATTTGTTAAGGAAGTGACCGGATTCATTTCATTTCTAACTGCACTCAGGAGTCGGCGAGGCGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAGAATATACATTGGTATGGGAGCGATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAACTTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAAGCGACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCTTGCTCTTGCAGAAGGATCCGTGTGGTTGCGCTTGGTCGACACATCACTTGCATTTCCAGGTTTCTTTGCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAAGCGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTCTGCAGTCAAAATAAGGATCACAAACCTATGATAAGTACAAATTTTTGNGTATATCTACAGTCAGAAACCTGAGGTCCCAATAAGTTGTAGTGGTTGNATATGAGAATGGTAATGATAATAAAGATGNATCATTTTNCAGATGGATGGTACTCCTATACAGGTACCCTCATGGTNCCTGGCAGAGTTAANTGATCCCATACTTGGGGGGGCTNTATTTC] consensusID : consensus_5746#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [GAGATGAATGGGGGCCCTCTGGTGCTGGTTCAGTATCATACAGGGATAGAGGGCCTTTGAACTGGAGAGGCATGAAGCCACCCTCTGTTAAGGAAGTGGCCGGATTCATTTCATTTCTAACTGCACTCGGGAGTGGGCGAGGTGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAGAATATACATTGGTATGGGAGCCATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAACTTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAAGCGACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCCTGCTCTTGCAGAAGGATCCGTGTGGTTGCGCTTGGTCGACACATCACTTGCATTTCCAGGTTTCTTTGCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAAGCGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTTTGCAGTCAAAATAAGGATCCCAAACCTTTGATAAGTACAAATTTTTGTGTATATCTACAGTCAGAAACCTGAGGTCCCAATAAGTTGTAGTGGTTGTATATGAGAATGTTAATGATAATAAAAGAATGTATCATTTTCCAAAAAAAAAAAAAAAA] [-] EMBL CA762003 [GAGATGAATGGGGGCCCTCTGGTGCTGGTTCAGTATCATACAGGGATAGAGGGCCTTTGAACTGGAGAGGCATGAAGCCACCCTCTGTTAAGGAAGTGGCCGGATTCATTTCATTTCTAACTGCACTCGGGAGTGGGCGAGGTGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAGAATATACATTGGTATGGGAGCCATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAACTTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAAGCGACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCCTGCTCTTGCAGAAGGATCCGTGTGGTTGCGCTTGGTCGACACATCACTTGCATTTCCAGGTTTCTTTGCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAAGCGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTTTGCAGTCAAAATAAGGATCCCAAACCTTTGATAAGTACAAATTTTTGTGTATATCTACAGTCAGAAACCTGAGGTCCCAATAAGTTGTAGTGGTTGTATATGAGAATGTTAATGATAATAAAAGAATGTATCATTTTCCAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5746#0 GAGTAGAAAGGTTTTGAAGGTCCATCAGAGAACAGTGCTGTCCTTCAGACAAGGCTAAGG 60 consensus_5746#1 ------------------------------------------------------------ consensus_5746#0 CAGATACGCAACTTCTTATTTATTCTATTTGTATCACTTGGTGTTCCTGTTCTGAACATG 120 consensus_5746#1 ------------------------------------------------------------ consensus_5746#0 GGAGATGAATGTGGGCACTCTGCTGCTGGTTCAGTATCATACATTGATAGATGGCCTCTG 180 consensus_5746#1 -GAGATGAATGGGGGCCCTCTGGTGCTGGTTCAGTATCATACAGGGATAGAGGGCCTTTG 59 ********** **** ***** ******************** ****** ***** ** consensus_5746#0 AACTGGAGAGGCATGAAGACAACATTTGTTAAGGAAGTGACCGGATTCATTTCATTTCTA 240 consensus_5746#1 AACTGGAGAGGCATGAAGCCACCCTCTGTTAAGGAAGTGGCCGGATTCATTTCATTTCTA 119 ****************** ** * * ************* ******************** consensus_5746#0 ACTGCACTCAGGAGTCGGCGAGGCGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAG 300 consensus_5746#1 ACTGCACTCGGGAGTGGGCGAGGTGATATCTTTCAGAGAAGGGAATTCCTAAAACTTGAG 179 ********* ***** ******* ************************************ consensus_5746#0 AATATACATTGGTATGGGAGCGATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAAC 360 consensus_5746#1 AATATACATTGGTATGGGAGCCATCTATGTGAGCCAGGTTGGGATGATCCTACCAGCAAC 239 ********************* ************************************** consensus_5746#0 TTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAGGC 420 consensus_5746#1 TTTCTTTGCATGCACATAAATGCAGAGGTAGATGAAATGGCGGCAGATTCGGTCAGAAGC 299 ********************************************************* ** consensus_5746#0 GACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCCTGCTCTT 480 consensus_5746#1 GACCTGTACATCTGTTTCAATGCAAACGAGGAATCAGTGAGTGCTGCCTTGCCTGCTCTT 359 ************************************************************ consensus_5746#0 GCAGAAGGATCCGTGTGGTTGCGCTTGGTTGACACATCGCTTGCATTTCCAGGTTTCTTT 540 consensus_5746#1 GCAGAAGGATCCGTGTGGTTGCGCTTGGTCGACACATCACTTGCATTTCCAGGTTTCTTT 419 ***************************** ******** ********************* consensus_5746#0 GCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAA 600 consensus_5746#1 GCAACCGAATCTAATCCCAAGGTGCAACAAGTGCCAGGATTATCCTCTTATCATGTGGAA 479 ************************************************************ consensus_5746#0 GCGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTCTGCAGTCAAAA 660 consensus_5746#1 GCGCATACTTGTGTTCTATTTGAATCAAAGAGCGCTCTTGCCTAGTTTTTGCAGTCAAAA 539 ************************************************ *********** consensus_5746#0 TAAGGATCACAAACCTATGATAAGTACAAATTTTTGNGTATATCTACAGTCAGAAACCTG 720 consensus_5746#1 TAAGGATCCCAAACCTTTGATAAGTACAAATTTTTGTGTATATCTACAGTCAGAAACCTG 599 ******** ******* ******************* *********************** consensus_5746#0 AGGTCCCAATAAGTTGTAGTGGTTGNATATGAGAATGGTAATGATAATAAAG--ATGNAT 778 consensus_5746#1 AGGTCCCAATAAGTTGTAGTGGTTGTATATGAGAATGTTAATGATAATAAAAGAATGTAT 659 ************************* *********** ************* *** ** consensus_5746#0 CATTTTNCAGATGGATGGTACTCCTATACAGGTACCCTCATGGTNCCTGGCAGAGTTAAN 838 consensus_5746#1 CATTTTCCAAAAAAAAAAAAAAAA------------------------------------ 683 ****** ** * * * consensus_5746#0 TGATCCCATACTTGGGGGGGCTNTATTTC 867 consensus_5746#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||