These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5750#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1985 fasta sequence [CCCGCCGCGCCGCGCCGCCCCGATACCTCGCTTCTTCTACAAGCTTCCATTCCTCGGTCGGTGCCGGCCGCTTCGGGCGCGCGTGGAGGTGGTTGCTGCTGCTGCTGCTGCTGGGGGCGGCAGAAGCTAGTGGCGGTGGGTGTGGGATGCCCGCCGCGACGCCGACCCGCTCTCGCCTCCTCTTCCCCGCGTTGCGGCCGCGGCCGGTGGTGGTTAAAGCGGACGGGGGAAGCCTCGCCGCTGCCGGTGACTGACTGGCTGACTGACCGACTGCGCCGCCGCGGTGCGGTGGGACCACGCGCGACGCCATGGACGCCGCCTCCCGCCCCGCCGTCGTCATCGACAACGGCACCGGGTACACGAAGATGGGGTTCGCCGGGAACGTGGAGCCCTGCTTCATCACCCCCACCGTCGTCGCCGTCAACGACACCTTCGCCGGCCAGACCAGGGCCAACACCACCAAGGGGAACTGGATGGCGCAGCACAGCGCCGGCGTCATGGCCGATCTCGACTTCTTCATCGGGGAGGACGCCCTGGCCCGCTCCCGCTCCAGCAACACCTACAACCTCAGCTATCCAATTCACAATGGCCAGGTTGAGAATTGGGACACCATGGAGAGGTTCTGGCAGCAGTGCATTTTCAATTACCTGCGGTGTGATCCGGAGGATCACTATTTTCTGCTCACCGAGAGCCCCCTGACTCCTCCCGAGACCCGCGAGTACACCGGGGAGATCATGTTTGAGACTTTCAATGTGCCTGGTCTGTACATAGCGTGCCAGCCGGTTCTTGCCCTCGCAGCAGGATACACCACCACAAAGTGTGAAATGACAGGTGTTGTAGTCGATGTGGGTGATGGGGCTACCCACATTGTTCCTGTTGCTGATGGTTATGTTATATGAAGCAGCATCAGATCAATTCCAATTACAGGCAAGGATGTTACCCAGTTTATTCAGCAACTCTTAAAGGAAAGAGGTGAGCACATTCCACCAGAAGAATCTTTTGATGTGGCAAGGAGAGTGAAAGAAATGTACTGCTATACATGTTCAGATATTGTGAAGGAATTTAATAAGCATGACAGAGAGCCCAATAAGTACATAAAGCACTGGAGTGGCATCAAACCAAAAACTGGTGCCAAATACACCTGCGACATTGGATATGAACGCTTCCTAGGGCCTGAGATTTTCTTCCACCCTGAGATTTACAACAATGACTTCACCACTCCTTTGCATGTAGTTATTGACAAGTGCATCCAATCATCCCCAATTGACACAAGAAGGGCTCTTTATAAGAATATTGTCTTGTCCGGGGGATCAACTATGTTTAAGGATTTCCACAGGAGGCTGCAGCGGGACCT-AAAAAAGATAGTGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAGGCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGCTGTCTGGTTTGGTGGTTCTGTGCTTGCCTCTACCGCTGAATTCTACGAGGCTTGCCACACAAAAGCAGAGTATGAAGAGTATGGCGCAAGCATCTGCCGGACGAATCCTGTTTTCAAAGGGATGTACTAAACCACGGCGCAAAGCTTCTGTAGACATCACCAGTGGCA-CCCCCAACGCGATCCAGCTGCACTGCCCAGCATGGTACAACTGACGTTGGGGACCGAGGGGGATCCTGCAGTAGCCTCGCTGTTATGAGTTGTACAAATCTAGCAGGCGCATAGATAGATCCACTCTTTCGGTAATACATTCCACATGTTCA-TCAGTTTTTGCTAGCCTAGCAGCAAAAACAATATGACCGAACGGCATGGGCAAAATATATGTTTCATGCTGCTGTATAATCTTTGTTGGTGACGGTGTAGCATTACGACATTGTTTTTTTTGTTGGTGATTTGGTTTTGATCTTTGTATGTCTCATGCTTATTACGTAGTATTAACTCCATTCCGAAATATGAAAAAAAA] [+] EMBL AK101163 [CCCGCCGCGCCGCGCCGCCCCGATACCTCGCTTCTTCTACAAGCTTCCATTCCTCGGTCGGTGCCGGCCGCTTCGGGCGCGCGTGGAGGTGGTTGCTGCTGCTGCTGCTGCTGGGGGCGGCAGAAGCTAGTGGCGGTGGGTGTGGGATGCCCGCCGCGACGCCGACCCGCTCTCGCCTCCTCTTCCCCGCGTTGCGGCCGCGGCCGGTGGTGGTTAAAGCGGACGGGGGAAGCCTCGCCGCTGCCGGTGACTGACTGGCTGACTGACCGACTGCGCCGCCGCGGTGCGGTGGGACCACGCGCGACGCCATGGACGCCGCCTCCCGCCCCGCCGTCGTCATCGACAACGGCACCGGGTACACGAAGATGGGGTTCGCCGGGAACGTGGAGCCCTGCTTCATCACCCCCACCGTCGTCGCCGTCAACGACACCTTCGCCGGCCAGACCAGGGCCAACACCACCAAGGGGAACTGGATGGCGCAGCACAGCGCCGGCGTCATGGCCGATCTCGACTTCTTCATCGGGGAGGACGCCCTGGCCCGCTCCCGCTCCAGCAACACCTACAACCTCAGCTATCCAATTCACAATGGCCAGGTTGAGAATTGGGACACCATGGAGAGGTTCTGGCAGCAGTGCATTTTCAATTACCTGCGGTGTGATCCGGAGGATCACTATTTTCTGCTCACCGAGAGCCCCCTGACTCCTCCCGAGACCCGCGAGTACACCGGGGAGATCATGTTTGAGACTTTCAATGTGCCTGGTCTGTACATAGCGTGCCAGCCGGTTCTTGCCCTCGCAGCAGGATACACCACCACAAAGTGTGAAATGACAGGTGTTGTAGTCGATGTGGGTGATGGGGCTACCCACATTGTTCCTGTTGCTGATGGTTATGTTATATGAAGCAGCATCAGATCAATTCCAATTACAGGCAAGGATGTTACCCAGTTTATTCAGCAACTCTTAAAGGAAAGAGGTGAGCACATTCCACCAGAAGAATCTTTTGATGTGGCAAGGAGAGTGAAAGAAATGTACTGCTATACATGTTCAGATATTGTGAAGGAATTTAATAAGCATGACAGAGAGCCCAATAAGTACATAAAGCACTGGAGTGGCATCAAACCAAAAACTGGTGCCAAATACACCTGCGACATTGGATATGAACGCTTCCTAGGGCCTGAGATTTTCTTCCACCCTGAGATTTACAACAATGACTTCACCACTCCTTTGCATGTAGTTATTGACAAGTGCATCCAATCATCCCCAATTGACACAAGAAGGGCTCTTTATAAGAATATTGTCTTGTCCGGGGGATCAACTATGTTTAAGGATTTCCACAGGAGGCTGCAGCGGGACCT AAAAAAGATAGTGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAGGCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGCTGTCTGGTTTGGTGGTTCTGTGCTTGCCTCTACCGCTGAATTCTACGAGGCTTGCCACACAAAAGCAGAGTATGAAGAGTATGGCGCAAGCATCTGCCGGACGAATACTGTTTTCAAAGGGATGTACTAAACCACGGCGCAAAGCTTCTGTAGACATCACCAGTGGCA CCCCCAACGCGATCCAGCTGCACTGCCCAGCATGGTACAACTGACGTTGGGGACCGAGGGGGATCCTGCAGTAGCCTCGCTGTTATGAGTTGTACAAATCTAGCAGGCGCATAGATAGATCCACTCTTTCGGTAATACATTCCACATGTTCA TCAGTTTTTGCTAGCCTAGCAGCAAAAACAATATGACCGAACGGCATGGGCAAAATATATGTTTCATGCTGCTGTATAATCTTTGTTGGTGACGGTGTAGCATTACGACATTGTTTTTTTTGTTGGTGATTTGGTTT ] [+] EMBL CA767552 [ AAATGTACTGCTATACATGTTCAGATATTGTGAAGGAATTTAATAAGCATGACAGAGAGCCCAATAAGTACATAAAGCACTGGAGTGGCATCAAACCAAAAACTGGTGCCAAATACACCTGCGACATTGGATATGAACGCTTCCTAGGGCCTGAGATTTTCTTCCACCCTGAGATTTACAACAATGACTTCACCACTCCTTTGCATGTAGTTATTGACAAGTGCATCCAATCATCCCCAATTGACACAAGAAGGGCTCTTTATAAGAATATTGTCTTGTCCGGGGGATCAACTATGTTTAAGGATTTCCACAGGAGGCTGCAGCGGGACCTAAAAAAAGATAGTGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAGGCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGCTGTCTGGTTTGGTGGTTCTGTGCTTGCCTCTACCGCTGAATTCTACGAGGCTTGCCACACAAAAGCAGAGTATGAAGAGTATGGCGCAAGCATCTGCCGGACGAATCCTGTTTTCAAAGGCATGTACTAAACCACGGCGCAAAGCTTCTGTAGACATCACCAGTGGCACCCCCCAACGCGATCCAGCTGCACTGGCCAGCATGGTACAACTGACGTTGGGGACCGAGGGGGATCCTGCAGTAGCCTCGCTGNTATGAGTTGTACAAATCTAGCANGCGCATAGATAGATCCACTCTTTCGGTAATACATTNCACATGNTCATTAAGTTTTTGCTAGCCTAGCAGCAAAAACAATATGACCGAACGGC ] [-] EMBL CA762027 [ TCCGGGGGATCAACTATGTTTAAGGATTTCCACAGGAGGCTGCAGCGGGACCT AAAAAAGATAGTGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAGGCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGCTGTCTGGTTTGGTGGTTCTGTGCTTGCCTCTACCGCTGAATTCTACGAGGCTTGCCACACAAAAGCAGAGTATGAAGAGTATGGCGCAAGCATCTGCCGGACGAATCCTGTTTTCAAAGGGATGTACTAAACCACGGCGCAAAGCTTCTGTAGACATCACCAGTGGCA CCCCCAACGCGATCCAGCTGCACTGCCCAGCATGGTACAACTGACGTTGGGGACCGAGGGGGATCCTGCAGTAGCCTCGCTGTTATGAGTTGTACAAATCTAGCAGGCGCATAGATAGATCCACTCTTTCGGTAATACATTCCACATGTTCA TCAGTTTTTGCTAGCCTAGCAGCAAAAACAATATGACCGAACGGCATGGGCAAAATATATGTTTCATGCTGCTGTATAATCTTTGTTGGTGACGGTGTAGCATTACGACATTGTTTTTTTTGTTGGTGATTTGGTTTTGATCTTTGTATGTCTCATGCTTATTACGTAGTATTAACTCCATTCCGAAATATGAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||