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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1836 fasta sequence
[TTTCCGGGGGGTTCATGCAAATTGCAGGGTCGAGCTCGAGGAGGAGCAGCAATGGAGGCGCGCGGCGACCTGCGCTCGATCCTGCCCTACCTCCCCGTCGTGCTCCGCGGCGGCGCGCTCTTCTGGCCGCCGGCGGCGCAGGAGGCGCTCAAGGCGCTGGCGCTGGGCCCCGACGTGAGCCGCGTCTCCTCCGGCGACGTCCTCGCCGACGCCCTCACCGACCTCCGCCTCGCGCTCAACCTCGACCCACTCCCGCGCCGCGCCGCCGAGGGCTTCGCGCTCTTCTTCGACGACCTCCTGTCGCGGGCGCAGGCGCGGGACTGGTTCGACCACGTCGCCCCCTCCCTCGCCCGCCTCCTCCTCCGCCTCCCCACGCTGCTCGAGGGCCACTACCGCGCCGCCGGCGACGAGGCTCGCGGGCTCCGCATCCTGAGCTCGCAGGATGCCGGGCTCGTGCTCCTCAGCCAGGAGCTCGCCGCCGCGCTGCTCGCCTGCGCGCTCTTCTGCCTGTTCCCCACCGCCGATAGGGCCGAGGCGTGCCTCCCGGCGATCAATTTCGATAGCCTATTTGCGGCACTGTGTTATAATTCGAGGCAAAGCCAGGAGCAGAAGGTGAGGTGCCTTGTTCACTATTTTGACAGGGTGACCGCTTCTACACCTACTGGTTCCGTTTCGTTTGAGCGTAAGGTTCTTCCTCGCCGTCCTGAATCTGATGGCATTACGTACCCTGACATGGATACTTGGATGAAATCTGGTGTTCCCCTTTGCACATTCCGGTAGGTATTTTCCTCAGGCTTGATAGAAGATGAGGAACAAGAAGCCCTTGAAGTTGACTTTGCAAATAGATATTTGGGAGGTGGCGCACTTTCCAGAGGCTGCGTGCAGGAAGAAATCCGGTTCATGATAAACCCAGAATTGATCGTGGGCATGCTCTTCATGGTTTCAATGGAAGATAATGAAGCTATAGAAATTGTTGGTGCAGAAAGGTTCTCACAGTACATGGGGTATGGTTCCTCATTCCGTTTTACTGGTGACTACTTAGATAGCAAACCCTTTGATGCGATGGGTAGACGGAAAACTAGGATAGTGGCAATTGATGCTTTGGACTGTCCAACTAGGTTACAGTTTGAATCTAGTGGTCTTCTAAGGGAAGTGAACAAGGCTTTTTGTGGATTTTTGGATCAATCAAATCATCAGCTCTGTGCAAAGCTTGTCCAGGATTTAAATACAAAGGATAACTGTCCAAGTGTCATTCCTGATGAATGCATAGGAGTTTCAACTGGAAACTGGGGTTGCGGGGCTTTTGGTGGAAACCCTGAAATCAAGAGCATGATTCAATGGATTGCTGCATCACAGGCACTCCGATCTTTTATTAACTACTACACTTTTGAGTCCGAATCACTGAAAAGATTAGAAGAGGTGACCCAGTGGATATTGCGCCATAGGTGGACGGTTGGCGAGTTGTGGGACATGCTTGTGGAGTATTCATCCCAGAGGCTAAGAGGAGACACCAATGAGGGCTTTTTAACATGGCTACTTCCCAAGGACATCCCCAATGGTGATGTAGATTACATGTGTGAATAGCCCTTTGTTTAAATCAAGGAAACCGACCTAGGAAAAATGTGCATTGCTTGTTGGAAGCAGACTGAAACACCGTTTGTTGTGGCCTTGTGGCTGTGAGATCAACTTGTTGCGCCTGTATGGCAATCCTTACCTGCTTCTGATGGCAGTTTGCTCCATTCTCTATGCATTTGTGTCTAAATTCATCAATGTATTGTCAAAGAAGATGACAGATCTATAACGGAGTTCAATAGCATACGGAACATACTTATACTA]
[+] EMBL AK068101 [TTTCCGGGGGGTTCATGCAAATTGCAGGGTCGAGCTCGAGGAGGAGCAGCAATGGAGGCGCGCGGCGACCTGCGCTCGATCCTGCCCTACCTCCCCGTCGTGCTCCGCGGCGGCGCGCTCTTCTGGCCGCCGGCGGCGCAGGAGGCGCTCAAGGCGCTGGCGCTGGGCCCCGACGTGAGCCGCGTCTCCTCCGGCGACGTCCTCGCCGACGCCCTCACCGACCTCCGCCTCGCGCTCAACCTCGACCCACTCCCGCGCCGCGCCGCCGAGGGCTTCGCGCTCTTCTTCGACGACCTCCTGTCGCGGGCGCAGGCGCGGGACTGGTTCGACCACGTCGCCCCCTCCCTCGCCCGCCTCCTCCTCCGCCTCCCCACGCTGCTCGAGGGCCACTACCGCGCCGCCGGCGACGAGGCTCGCGGGCTCCGCATCCTGAGCTCGCAGGATGCCGGGCTCGTGCTCCTCAGCCAGGAGCTCGCCGCCGCGCTGCTCGCCTGCGCGCTCTTCTGCCTGTTCCCCACCGCCGATAGGGCCGAGGCGTGCCTCCCGGCGATCAATTTCGATAGCCTATTTGCGGCACTGTGTTATAATTCGAGGCAAAGCCAGGAGCAGAAGGTGAGGTGCCTTGTTCACTATTTTGACAGGGTGACCGCTTCTACACCTACTGGTTCCGTTTCGTTTGAGCGTAAGGTTCTTCCTCGCCGTCCTGAATCTGATGGCATTACGTACCCTGACATGGATACTTGGATGAAATCTGGTGTTCCCCTTTGCACATTCCGGTAGGTATTTTCCTCAGGCTTGATAGAAGATGAGGAACAAGAAGCCCTTGAAGTTGACTTTGCAAATAGATATTTGGGAGGTGGCGCACTTTCCAGAGGCTGCGTGCAGGAAGAAATCCGGTTCATGATAAACCCAGAATTGATCGTGGGCATGCTCTTCATGGTTTCAATGGAAGATAATGAAGCTATAGAAATTGTTGGTGCAGAAAGGTTCTCACAGTACATGGGGTATGGTTCCTCATTCCGTTTTACTGGTGACTACTTAGATAGCAAACCCTTTGATGCGATGGGTAGACGGAAAACTAGGATAGTGGCAATTGATGCTTTGGACTGTCCAACTAGGTTACAGTTTGAATCTAGTGGTCTTCTAAGGGAAGTGAACAAGGCTTTTTGTGGATTTTTGGATCAATCAAATCATCAGCTCTGTGCAAAGCTTGTCCAGGATTTAAATACAAAGGATAACTGTCCAAGTGTCATTCCTGATGAATGCATAGGAGTTTCAACTGGAAACTGGGGTTGCGGGGCTTTTGGTGGAAACCCTGAAATCAAGAGCATGATTCAATGGATTGCTGCATCACAGGCACTCCGATCTTTTATTAACTACTACACTTTTGAGTCCGAATCACTGAAAAGATTAGAAGAGGTGACCCAGTGGATATTGCGCCATAGGTGGACGGTTGGCGAGTTGTGGGACATGCTTGTGGAGTATTCATCCCAGAGGCTAAGAGGAGACACCAATGAGGGCTTTTTAACATGGCTACTTCCCAAGGACATCCCCAATGGTGATGTAGATTACATGTGTGAATAGCCCTTTGTTTAAATCAAGGAAACCGACCTAGGAAAAATGTGCATTGCTTGTTGGAAGCAGACTGAAACACCGTTTGTTGTGGCCTTGTGGCTGTGAGATCAACTTGTTGCGCCTGTATGGCAATCCTTACCTGCTTCTGATGG ]
[-] EMBL CB629126 [ CAAACCCTTTGATGCGATGGGTAGACGGAAAACTAGGATAGTGGCAATTGATGCTTTGGACTGTCCAACTAGGTTACAGTTTGAATCTAGTGGTCTTCTAAGGGAAGTGAACAAGGCTTTTTGTGGATTTTTGGATCAATCAAATCATCAGCTCTGTGCAAAGCTTGTCCAGGATTTAAATACAAAGGATAACTGTCCAAGTGTCATTCCTGATGAATGCATAGGAGTTTCAACTGGAAACTGGGGTTGCGGGGCTTTTGGTGGAAACCCTGAAATCAAGAGCATGATTCAATGGATTGCTGCATCACAGGCACTCCGATCTTTTATTAACTACTACACTTTTGAGTCCGAATCACTGAAAAGATTAGAAGAGGTGACCCAGTGGATATTGCGCCATAGGTGGACGGTTGGCGAGTTGTGGGACATGCTTGTGGAGTATTCATCCCAGAGGCTAAGAGGAGACACCAATGAGGGCTTTTTAACATGGCTACTTCCCAAGGACATCCCCAATGGTGATGTAGATTACATGTGTGAATAGCCCTTTGTTTAAATCAAGGAAACCGACCTAGGAAAAATGTGCATTGCTTGTTGGAAGCAGACTGAAACACCGTTTGTTGTGGCCTTGTGGCTGTGAGATCAACTTGTTGCGCCTGTATGGCAATCCTTACCTGCTTCTGATGGCAGTTTGCTCCATTCTCTATGCATTTGTGTCTAAATTCATCAATGTATTGTCAAAGAAGATGACAGATCTATAACGGAGTTCAATAGCATACGGAACATACTTATACTA]
consensusID : consensus_5753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 834 fasta sequence
[TTTCGATTTCCGGGGGGTTCATGCAAATTGCAAGGTCGAGCTCGAGGAGGAGCAGCAATGGAGGCGCGCGGCGACCTGCGCTCGATCCTGCCCTACCTCCCCGTCGTGCTCCGCGGCGGCGCGCTCTTCTGGCCGCCGGCGGCGCAGGAGGCGCTCAAGGCGCTGGCGCTGGGCCCCGACGTGAGCCGCGTCTCCTCCGGCGACGTCCTCGCCGACGCCCTCACCGACCTCCGCCTCGCGCTCAACCTCGACCCACTCCCGCGCCGCGCCGCCGAGGGCTTCGCGCTCTTCTTCGACGACCTCCTGTCGCGGGCGCAGGCGCGGGACTGGTTCGACCACGTCGCCCCCTCCCTCGCCCGCCTCCTCCTCCGCCTCCCCACGCTGCTCGAGGGCCACTACCGCGCCGCCGGCGACGAGGCTCGCGGGCTCCGCATCCTGAGCTCGCAGGATGCCGGGCTCGTGCTCCTCAGCCAGGAGCTCGCCGCCGCGCTGCTCGCCTGCGCGCTCTTCTGCCTGTTCCCCACCGCCGATAGGGCCGAGGCGTGCCTCCCGGCGATCAATTTCGATAGCCTATTTGCGTAATTCCACTGCCATTTTGATCTAGTTTTCTTAGAGTTGGTACATTTGGGCTAAATGATTGAACTTTTCGAGCTTATTGGTTATGCTTTTGTGGTTTACTGATTGATCCATAGGGCACTGTGTTATAATTCGAGGCAAAGCCAGGAGCAGAAGGTGAGGTGCCTTGTTCACTATTTTGACAGGGTGACCGCTTCTACACCTACTGGTTCCGTTTCGTTTGAGCGTAAGTTCTTCCTCGCCGTCCTGAATCTGATG]
[+] EMBL CB629125 [TTTCGATTTCCGGGGGGTTCATGCAAATTGCAAGGTCGAGCTCGAGGAGGAGCAGCAATGGAGGCGCGCGGCGACCTGCGCTCGATCCTGCCCTACCTCCCCGTCGTGCTCCGCGGCGGCGCGCTCTTCTGGCCGCCGGCGGCGCAGGAGGCGCTCAAGGCGCTGGCGCTGGGCCCCGACGTGAGCCGCGTCTCCTCCGGCGACGTCCTCGCCGACGCCCTCACCGACCTCCGCCTCGCGCTCAACCTCGACCCACTCCCGCGCCGCGCCGCCGAGGGCTTCGCGCTCTTCTTCGACGACCTCCTGTCGCGGGCGCAGGCGCGGGACTGGTTCGACCACGTCGCCCCCTCCCTCGCCCGCCTCCTCCTCCGCCTCCCCACGCTGCTCGAGGGCCACTACCGCGCCGCCGGCGACGAGGCTCGCGGGCTCCGCATCCTGAGCTCGCAGGATGCCGGGCTCGTGCTCCTCAGCCAGGAGCTCGCCGCCGCGCTGCTCGCCTGCGCGCTCTTCTGCCTGTTCCCCACCGCCGATAGGGCCGAGGCGTGCCTCCCGGCGATCAATTTCGATAGCCTATTTGCGTAATTCCACTGCCATTTTGATCTAGTTTTCTTAGAGTTGGTACATTTGGGCTAAATGATTGAACTTTTCGAGCTTATTGGTTATGCTTTTGTGGTTTACTGATTGATCCATAGGGCACTGTGTTATAATTCGAGGCAAAGCCAGGAGCAGAAGGTGAGGTGCCTTGTTCACTATTTTGACAGGGTGACCGCTTCTACACCTACTGGTTCCGTTTCGTTTGAGCGTAAGTTCTTCCTCGCCGTCCTGAATCTGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5753#0 ------TTTCCGGGGGGTTCATGCAAATTGCAGGGTCGAGCTCGAGGAGGAGCAGCAATG 54
consensus_5753#1 TTTCGATTTCCGGGGGGTTCATGCAAATTGCAAGGTCGAGCTCGAGGAGGAGCAGCAATG 60
************************** ***************************
consensus_5753#0 GAGGCGCGCGGCGACCTGCGCTCGATCCTGCCCTACCTCCCCGTCGTGCTCCGCGGCGGC 114
consensus_5753#1 GAGGCGCGCGGCGACCTGCGCTCGATCCTGCCCTACCTCCCCGTCGTGCTCCGCGGCGGC 120
************************************************************
consensus_5753#0 GCGCTCTTCTGGCCGCCGGCGGCGCAGGAGGCGCTCAAGGCGCTGGCGCTGGGCCCCGAC 174
consensus_5753#1 GCGCTCTTCTGGCCGCCGGCGGCGCAGGAGGCGCTCAAGGCGCTGGCGCTGGGCCCCGAC 180
************************************************************
consensus_5753#0 GTGAGCCGCGTCTCCTCCGGCGACGTCCTCGCCGACGCCCTCACCGACCTCCGCCTCGCG 234
consensus_5753#1 GTGAGCCGCGTCTCCTCCGGCGACGTCCTCGCCGACGCCCTCACCGACCTCCGCCTCGCG 240
************************************************************
consensus_5753#0 CTCAACCTCGACCCACTCCCGCGCCGCGCCGCCGAGGGCTTCGCGCTCTTCTTCGACGAC 294
consensus_5753#1 CTCAACCTCGACCCACTCCCGCGCCGCGCCGCCGAGGGCTTCGCGCTCTTCTTCGACGAC 300
************************************************************
consensus_5753#0 CTCCTGTCGCGGGCGCAGGCGCGGGACTGGTTCGACCACGTCGCCCCCTCCCTCGCCCGC 354
consensus_5753#1 CTCCTGTCGCGGGCGCAGGCGCGGGACTGGTTCGACCACGTCGCCCCCTCCCTCGCCCGC 360
************************************************************
consensus_5753#0 CTCCTCCTCCGCCTCCCCACGCTGCTCGAGGGCCACTACCGCGCCGCCGGCGACGAGGCT 414
consensus_5753#1 CTCCTCCTCCGCCTCCCCACGCTGCTCGAGGGCCACTACCGCGCCGCCGGCGACGAGGCT 420
************************************************************
consensus_5753#0 CGCGGGCTCCGCATCCTGAGCTCGCAGGATGCCGGGCTCGTGCTCCTCAGCCAGGAGCTC 474
consensus_5753#1 CGCGGGCTCCGCATCCTGAGCTCGCAGGATGCCGGGCTCGTGCTCCTCAGCCAGGAGCTC 480
************************************************************
consensus_5753#0 GCCGCCGCGCTGCTCGCCTGCGCGCTCTTCTGCCTGTTCCCCACCGCCGATAGGGCCGAG 534
consensus_5753#1 GCCGCCGCGCTGCTCGCCTGCGCGCTCTTCTGCCTGTTCCCCACCGCCGATAGGGCCGAG 540
************************************************************
consensus_5753#0 GCGTGCCTCCCGGCGATCAATTTCGATAGCCTATTTGCGGCACTGTGTTATAATTCGAGG 594
consensus_5753#1 GCGTGCCTCCCGGCGATCAATTTCGATAGCCTATTTGCGTAATTCCACTGCCATTTTGAT 600
*************************************** * * * ***
consensus_5753#0 CAAAGCCAGGAGCAGAAGGTGAGGT--GCCTTGTTCACT-ATTTTGACAGGGTGACCGCT 651
consensus_5753#1 CTAGTTTTCTTAGAGTTGGTACATTTGGGCTAAATGATTGAACTTTTCGAGCTTATTGGT 660
* * ** *** * * ** * * * * ** * * * * * *
consensus_5753#0 TCTACACCTACTGGTT-CCGTTTCGTTTGAGCGTAAGGTTCTTCCTCGCCGTCCTGAATC 710
consensus_5753#1 TATGCTTTTGTGGTTTACTGATTGATCCATAGGGCACTGTGTTATAATTCGAGGCAAAGC 720
* * * * * ** * * ** * * * * ** ** ** *
consensus_5753#0 TGATGGCATTACGTACCCTGACATGGATACTTGGATGAAATCTGGTGTTCCCCTTTGCAC 770
consensus_5753#1 CAGGAGCAGAAGGTGAGGTGCCTTGTTCACTATTTTGACA--GGGTGACCGCTTCTACAC 778
*** * ** ** * ** *** *** * **** * * * * ***
consensus_5753#0 ATTCCGGTAGGTATTTTCCTCAGGCTTGATAGAAGATGAGGAACAAGAAGCCCTTGAAGT 830
consensus_5753#1 CTACTGGT-------TCCGTTTCGTTTGAGCGTAAGTTCTTC-CTCGCCGTCCT-GAATC 829
* * *** * * * * **** * * * * * * *** ***
consensus_5753#0 TGACTTTGCAAATAGATATTTGGGAGGTGGCGCACTTTCCAGAGGCTGCGTGCAGGAAGA 890
consensus_5753#1 TGATG------------------------------------------------------- 834
***
consensus_5753#0 AATCCGGTTCATGATAAACCCAGAATTGATCGTGGGCATGCTCTTCATGGTTTCAATGGA 950
consensus_5753#1 ------------------------------------------------------------
consensus_5753#0 AGATAATGAAGCTATAGAAATTGTTGGTGCAGAAAGGTTCTCACAGTACATGGGGTATGG 1010
consensus_5753#1 ------------------------------------------------------------
consensus_5753#0 TTCCTCATTCCGTTTTACTGGTGACTACTTAGATAGCAAACCCTTTGATGCGATGGGTAG 1070
consensus_5753#1 ------------------------------------------------------------
consensus_5753#0 ACGGAAAACTAGGATAGTGGCAATTGATGCTTTGGACTGTCCAACTAGGTTACAGTTTGA 1130
consensus_5753#1 ------------------------------------------------------------
consensus_5753#0 ATCTAGTGGTCTTCTAAGGGAAGTGAACAAGGCTTTTTGTGGATTTTTGGATCAATCAAA 1190
consensus_5753#1 ------------------------------------------------------------
consensus_5753#0 TCATCAGCTCTGTGCAAAGCTTGTCCAGGATTTAAATACAAAGGATAACTGTCCAAGTGT 1250
consensus_5753#1 ------------------------------------------------------------
consensus_5753#0 CATTCCTGATGAATGCATAGGAGTTTCAACTGGAAACTGGGGTTGCGGGGCTTTTGGTGG 1310
consensus_5753#1 ------------------------------------------------------------
consensus_5753#0 AAACCCTGAAATCAAGAGCATGATTCAATGGATTGCTGCATCACAGGCACTCCGATCTTT 1370
consensus_5753#1 ------------------------------------------------------------
consensus_5753#0 TATTAACTACTACACTTTTGAGTCCGAATCACTGAAAAGATTAGAAGAGGTGACCCAGTG 1430
consensus_5753#1 ------------------------------------------------------------
consensus_5753#0 GATATTGCGCCATAGGTGGACGGTTGGCGAGTTGTGGGACATGCTTGTGGAGTATTCATC 1490
consensus_5753#1 ------------------------------------------------------------
consensus_5753#0 CCAGAGGCTAAGAGGAGACACCAATGAGGGCTTTTTAACATGGCTACTTCCCAAGGACAT 1550
consensus_5753#1 ------------------------------------------------------------
consensus_5753#0 CCCCAATGGTGATGTAGATTACATGTGTGAATAGCCCTTTGTTTAAATCAAGGAAACCGA 1610
consensus_5753#1 ------------------------------------------------------------
consensus_5753#0 CCTAGGAAAAATGTGCATTGCTTGTTGGAAGCAGACTGAAACACCGTTTGTTGTGGCCTT 1670
consensus_5753#1 ------------------------------------------------------------
consensus_5753#0 GTGGCTGTGAGATCAACTTGTTGCGCCTGTATGGCAATCCTTACCTGCTTCTGATGGCAG 1730
consensus_5753#1 ------------------------------------------------------------
consensus_5753#0 TTTGCTCCATTCTCTATGCATTTGTGTCTAAATTCATCAATGTATTGTCAAAGAAGATGA 1790
consensus_5753#1 ------------------------------------------------------------
consensus_5753#0 CAGATCTATAACGGAGTTCAATAGCATACGGAACATACTTATACTA 1836
consensus_5753#1 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||