These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5755#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1293 fasta sequence [CGACACCGACCGACCGAGCCCTCGCCGCGCGCCGCGCCGATGCCGCAAGCCTCCTCCTCCTCCTCGCCGGCGACGGCGGCGGCGCCGCCTCCGCCGCAGCCTGCGGCGGACCCTTCTCCGTCGGCTGTGCCAGCTTCGGAGGAGGCGCTGGACCCGCAGACGCCGGCGCCGCCGCCGCAGGCGCAGCCGGAGGCCGTGCTGACCGCCGCGCAGAAGGCGCTCCGCTCCAAGCCGACGAGGCCGCCCGAAGACTCCGACAAGAAGAATAAAAAACTCAAGGATGTGGAGATCAGTTTCCCAATTGTCTATGGAACCATTTCTTTCTGGCTTGGCAAGAAGGCAAGCGAGTACAACTCTCACAAATGGACTGTGTATGTTCGCTCTGCAACAAATGAGGATTTAAGTGTGATAGTTAAGCGTGTGGTGTTTCAACTTCACCCGAGTTTCACTAATCCAACAAGAGTTGTAGAGCAACCACCTTTCGAGTTGTCTGAATCTGGCTGGGGAGAATTTGAAATTGCAATAACCCTTTATTTCCACAGTGACGTGTGTGAAAAGCGTCTGGATTTGTTTCATCAACTTAAACTGTATCCAGAAGAGGACACTGGACCACAATCAAC-TAAAAAGCCTGTTGTCGTGGAAACGTACGATGAAATTGTCTTCCCTGAGCCCACTGAGGCCTTTTTCCAACGAGTACAAAATCATCCAGCTGCTACTGTGCCTAGGTTGCCTCCTGGTATAACCTCGCCTCCTCCAGGCCCTATGGAACTTGTGCCACATGAAAAGAAGCGTGGTGACACTAAGGATCATCCTTTGAGCCAGTGGTTCTCAAATTTCTCTGAAGCTGATGAACTATTAAAACTGGCTGCTGCTCGGCAACAGGTGCAAGCTCACATAGCTAAGCTGAGAAGGCAATTAAGCATGATAGATGGAATGCCTCAGCAATCCAAAGCTGTTTCTGTTCAAGGCCAACAATTTGGGCACGGCTAATTTGCTACAAGTGCTGTCATAAGGAAGATGTTGGGATCTGATAACAACGCTCTAACTAGATGATAACAAGTGTATCACTGTATTTCCATTGTAGCTGTTGCCTTAGCCCTTGGGCTTGCAATTAATGTACTAACAAGCAGTGTCATTGTGCATATATTCTACTATGATTTCATTCATCTTATGAGAACACCTACTTCTCTGATTGGCCCTTTTACTCCATACTGAAAGGGCTCATCTAAGCTGTTAATTTTTGCCCTGCTATATTATGGACATTCTAGAACAAGTACGATTGCTTAAAAAAAA] [+] EMBL AK109053 [CGACACCGACCGACCGAGCCCTCGCCGCGCGCCGCGCCGATGCCGCAAGCCTCCTCCTCCTCCTCGCCGGCGACGGCGGCGGCGCCGCCTCCGCCGCAGCCTGCGGCGGACCCTTCTCCGTCGGCTGTGCCAGCTTCGGAGGAGGCGCTGGACCCGCAGACGCCGGCGCCGCCGCCGCAGGCGCAGCCGGAGGCCGTGCTGACCGCCGCGCAGAAGGCGCTCCGCTCCAAGCCGACGAGGCCGCCCGAAGACTCCGACAAGAAGAATAAAAAACTCAAGGATGTGGAGATCAGTTTCCCAATTGTCTATGGAACCATTTCTTTCTGGCTTGGCAAGAAGGCAAGCGAGTACAACTCTCACAAATGGACTGTGTATGTTCGCTCTGCAACAAATGAGGATTTAAGTGTGATAGTTAAGCGTGTGGTGTTTCAACTTCACCCGAGTTTCACTAATCCAACAAGAGTTGTAGAGCAACCACCTTTCGAGTTGTCTGAATCTGGCTGGGGAGAATTTGAAATTGCAATAACCCTTTATTTCCACAGTGACGTGTGTGAAAAGCGTCTGGATTTGTTTCATCAACTTAAACTGTATCCAGAAGAGGACACTGGACCACAATCAAC TAAAAAGCCTGTTGTCGTGGAAACGTACGATGAAATTGTCTTCCCTGAGCCCACTGAGGCCTTTTTCCAACGAGTACAAAATCATCCAGCTGCTACTGTGCCTAGGTTGCCTCCTGGTATAACCTCGCCTCCTCCAGGCCCTATGGAACTTGTGCCACATGAAAAGAAGCGTGGTGACACTAAGGATCATCCTTTGAGCCAGTGGTTCTCAAATTTCTCTGAAGCTGATGAACTATTAAAACTGGCTGCTGCTCGGCAACAGGTGCAAGCTCACATAGCTAAGCTGAGAAGGCAATTAAGCATGATAGATGGAATGCCTCAGCAATCCAAAGCTGTTTCTGTTCAAGGCCAACAATTTGGGCACGGCTAATTTGCTACAAGTGCTGTCATAAGGAAGATGTTGGGATCTGATAACAACGCTCTAACTAGATGATAACAAGTGTATCACTGTATTTCCATTGTAGCTGTTGCCTTAGCCCTTGGGCTTGCAATTAATGTACTAACAAGCAGTGTCATTGTGCATATATTCTACTATGATTTCATTCATCTTATGAGAACACC ] [+] EMBL AU067877 [ AACTTAAAAAGCNTGTTGTCGTGNAAACGTACGATGAAATTGTCTTCCTTGAGCCCACTGAGGCCTTTTTCCAACGAGTACAAAATCATCCAGCTGCTACTGTGCCTAGGTTGCCTCCTGGTATAACCTTGCCTCCTCCAGGCCCTATGGAACTTGTGCCACATGAAAAGAAGCGTGGTGACACTAAGGATCATCCTTTGAGCCAGTGGTTCTCAAATTTCTCTGAAGCTGATGAACTATTAAAACTGGCTGCTGCTCGGCAACAGGTGCAAGCTCACATAGCTAAGCTGAGAAGGCAATTAAGCATGATAGATGGAATGCCTCAGCAATCCAAAGCTGTTTCTGTTCAAGGCCAACAATTTGGGCACGGCTAATTTGCTACAAGTGCTGTCATAAGGAAGATGTTGGGATCTGATAACAACGCTCTAACTAGATGATAACAAGTGTATCACTGTATTTCCATTGTAGCTGTTGCCTTAGCCCTTGGGCTTGCAATTAATGTACTAACAAGCAGTGTCATTGTGCATATATTCTACTATGATTTCATTCATCTTATGAGAACACCTACTTCTCTGATTGGCCCTTTTACTCCATACTGAAAGGGCTCATCTAAGCTGTTAATTTTTGCCCTGCTATATTATGGACATTCTAGAACAAGTACGATTGCTTAAAAAAAA] consensusID : consensus_5755#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 183 fasta sequence [AGAGGACGAGACAAGGGGGGATTTGATAACAACGCTCTAACTAGATGATAACAAGTGTATCCCTGTATTTCCATTGTAGCTGTTGCCTTAGCCCTTGGGCTTGCAATTAATGTACTAACAAGCAGTGTCATTGTGCATATATTTTACTATGATTTCATTCCTTTTATGAAAAAAAAAAAAAAA] [-] EMBL CA760864 [AGAGGACGAGACAAGGGGGGATTTGATAACAACGCTCTAACTAGATGATAACAAGTGTATCCCTGTATTTCCATTGTAGCTGTTGCCTTAGCCCTTGGGCTTGCAATTAATGTACTAACAAGCAGTGTCATTGTGCATATATTTTACTATGATTTCATTCCTTTTATGAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5755#0 CGACACCGACCGACCGAGCCCTCGCCGCGCGCCGCGCCGATGCCGCAAGCCTCCTCCTCC 60 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 TCCTCGCCGGCGACGGCGGCGGCGCCGCCTCCGCCGCAGCCTGCGGCGGACCCTTCTCCG 120 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 TCGGCTGTGCCAGCTTCGGAGGAGGCGCTGGACCCGCAGACGCCGGCGCCGCCGCCGCAG 180 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 GCGCAGCCGGAGGCCGTGCTGACCGCCGCGCAGAAGGCGCTCCGCTCCAAGCCGACGAGG 240 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 CCGCCCGAAGACTCCGACAAGAAGAATAAAAAACTCAAGGATGTGGAGATCAGTTTCCCA 300 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 ATTGTCTATGGAACCATTTCTTTCTGGCTTGGCAAGAAGGCAAGCGAGTACAACTCTCAC 360 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 AAATGGACTGTGTATGTTCGCTCTGCAACAAATGAGGATTTAAGTGTGATAGTTAAGCGT 420 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 GTGGTGTTTCAACTTCACCCGAGTTTCACTAATCCAACAAGAGTTGTAGAGCAACCACCT 480 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 TTCGAGTTGTCTGAATCTGGCTGGGGAGAATTTGAAATTGCAATAACCCTTTATTTCCAC 540 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 AGTGACGTGTGTGAAAAGCGTCTGGATTTGTTTCATCAACTTAAACTGTATCCAGAAGAG 600 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 GACACTGGACCACAATCAACTAAAAAGCCTGTTGTCGTGGAAACGTACGATGAAATTGTC 660 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 TTCCCTGAGCCCACTGAGGCCTTTTTCCAACGAGTACAAAATCATCCAGCTGCTACTGTG 720 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 CCTAGGTTGCCTCCTGGTATAACCTCGCCTCCTCCAGGCCCTATGGAACTTGTGCCACAT 780 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 GAAAAGAAGCGTGGTGACACTAAGGATCATCCTTTGAGCCAGTGGTTCTCAAATTTCTCT 840 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 GAAGCTGATGAACTATTAAAACTGGCTGCTGCTCGGCAACAGGTGCAAGCTCACATAGCT 900 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 AAGCTGAGAAGGCAATTAAGCATGATAGATGGAATGCCTCAGCAATCCAAAGCTGTTTCT 960 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 GTTCAAGGCCAACAATTTGGGCACGGCTAATTTGCTACAAGTGCTGTCATAAGGAAGATG 1020 consensus_5755#1 ---------------------------------------------AGAGGACGAGACAAG 15 * * * * * consensus_5755#0 TTGGGATCTGATAACAACGCTCTAACTAGATGATAACAAGTGTATCACTGTATTTCCATT 1080 consensus_5755#1 GGGGGATTTGATAACAACGCTCTAACTAGATGATAACAAGTGTATCCCTGTATTTCCATT 75 ***** ************************************** ************* consensus_5755#0 GTAGCTGTTGCCTTAGCCCTTGGGCTTGCAATTAATGTACTAACAAGCAGTGTCATTGTG 1140 consensus_5755#1 GTAGCTGTTGCCTTAGCCCTTGGGCTTGCAATTAATGTACTAACAAGCAGTGTCATTGTG 135 ************************************************************ consensus_5755#0 CATATATTCTACTATGATTTCATTCATCTTATGAGAACACCTACTTCTCTGATTGGCCCT 1200 consensus_5755#1 CATATATTTTACTATGATTTCATTCCTTTTATGAAAAAAAAAAAAAAA------------ 183 ******** **************** * ****** ** * * consensus_5755#0 TTTACTCCATACTGAAAGGGCTCATCTAAGCTGTTAATTTTTGCCCTGCTATATTATGGA 1260 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 CATTCTAGAACAAGTACGATTGCTTAAAAAAAA 1293 consensus_5755#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||