These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5760#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 407 fasta sequence [TTTGTGTGTCCGTGTTAAGCTGCACGTAATTGTTCTCTCGCGCTCCGACCTGCCGTTGTTGCAAGAGTACTACTACAACTATCGGTCTATCGTTCGGTGACGGTGAGACAGGGCACGTGAATGCAAGATCTCCGGCTATACACACGTACTCATGTAATATGATGCCTAGAGCATATCTGAATCCGTCGACAATGAAATTTTGGTTTTGCAAAATGCTGGTATTTGTTTATCATCCTGGCACGTGATATTTGCCTNNNGCATCTAAATCACTTTTACGAAATGTGCGCGTCAACAAACTGATACGGCCCAAATGCCAGAAATTACCAGCATATATAGCCATATCAACTTTTGATTCGTNTATATGANNNNNGANNTANTNNNAGAAAANNNNNNNNNNNNAAAANNNA] [+] EMBL CF195960 [TTTGTGTGTCCGTGTTAAGCTGCACGTAATTGTTCTCTCGCGCTCCGACCTGCCGTTGTTGCAAGAGTACTACTACAACTATCGGTCTATCGTTCGGTGACGGTGAGACAGGGCACGTGAATGCAAGATCTCCGGCTATACACACGTACTCATGTAATATGATGCCTAGAGCATATCTGAATCCGTCGACAATGAAATTTTGGTTTTGCAAAATGCTGGTATTTGTTTATCATCCTGGCACGTGATATTTGCCTNNNGCATCTAAATCACTTTTACGAAATGTGCGCGTCAACAAACTGATACGGCCCAAATGCCAGAAATTACCAGCATATATAGCCATATCAACTTTTGATTCGTNTATATGANNNNNGANNTANTNNNAGAAAANNNNNNNNNNNNAAAANNNA] [-] EMBL CF301792 [ GTTGTTGCAAGAGTACTACTACAACTATCGGTTTATCGTTCGGTGACGGTGAGACAGGGCACGTGAATGCAAGATCTCCGGCTATACACACGTACTCATGTAATATGATGCCTAGAGCATATTTGAATCCGTCGACAATGAAATTTTGGTTTTGCAAAATGCTGGTATTTGTTTATCATCCTGGCACGTGATATTTGCCTAGAGCATTTAAATCACTTTTACGAAAaaaaaaa ] consensusID : consensus_5760#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence [TTTGTGTGTCCGTGTTAAGCTGCACGTAATTGTTCTCTCGCGCTCCGACCTGCCGTTGTTGCAAGAGTACTACTACAACTATCGGTCTATCGTTCGGTGACGGTGAGACAGGGCACGTGAATGCAAGATCTCCGGCTATACACACGTACTCATGTAATATGATGCCTAGAGCATATCTGAATCCGTCGACAATGAAATTTTGGTTTTGCAAAATGCTGGTATTTGTTTATCATCCTGGCACGTGATATTTGCNTNNNNNATNNNNNTCACTTTTACGAAATGTGNNNGTCNNNN] [+] EMBL CF196899 [TTTGTGTGTCCGTGTTAAGCTGCACGTAATTGTTCTCTCGCGCTCCGACCTGCCGTTGTTGCAAGAGTACTACTACAACTATCGGTCTATCGTTCGGTGACGGTGAGACAGGGCACGTGAATGCAAGATCTCCGGCTATACACACGTACTCATGTAATATGATGCCTAGAGCATATCTGAATCCGTCGACAATGAAATTTTGGTTTTGCAAAATGCTGGTATTTGTTTATCATCCTGGCACGTGATATTTGCNTNNNNNATNNNNNTCACTTTTACGAAATGTGNNNGTCNNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5760#0 TTTGTGTGTCCGTGTTAAGCTGCACGTAATTGTTCTCTCGCGCTCCGACCTGCCGTTGTT 60 consensus_5760#1 TTTGTGTGTCCGTGTTAAGCTGCACGTAATTGTTCTCTCGCGCTCCGACCTGCCGTTGTT 60 ************************************************************ consensus_5760#0 GCAAGAGTACTACTACAACTATCGGTCTATCGTTCGGTGACGGTGAGACAGGGCACGTGA 120 consensus_5760#1 GCAAGAGTACTACTACAACTATCGGTCTATCGTTCGGTGACGGTGAGACAGGGCACGTGA 120 ************************************************************ consensus_5760#0 ATGCAAGATCTCCGGCTATACACACGTACTCATGTAATATGATGCCTAGAGCATATCTGA 180 consensus_5760#1 ATGCAAGATCTCCGGCTATACACACGTACTCATGTAATATGATGCCTAGAGCATATCTGA 180 ************************************************************ consensus_5760#0 ATCCGTCGACAATGAAATTTTGGTTTTGCAAAATGCTGGTATTTGTTTATCATCCTGGCA 240 consensus_5760#1 ATCCGTCGACAATGAAATTTTGGTTTTGCAAAATGCTGGTATTTGTTTATCATCCTGGCA 240 ************************************************************ consensus_5760#0 CGTGATATTTGCCTNNNGCATCTAAATCACTTTTACGAAATGTGCGCGTCAACAAACTGA 300 consensus_5760#1 CGTGATATTTGCNTNNNNNATNNNNNTCACTTTTACGAAATGTGNNNGTCNNNN------ 294 ************ **** ** ****************** *** consensus_5760#0 TACGGCCCAAATGCCAGAAATTACCAGCATATATAGCCATATCAACTTTTGATTCGTNTA 360 consensus_5760#1 ------------------------------------------------------------ consensus_5760#0 TATGANNNNNGANNTANTNNNAGAAAANNNNNNNNNNNNAAAANNNA 407 consensus_5760#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||