cluster # 5763

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Oryza sativa
cluster # 5763 cluster # 5763 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5763#0 length = 320 sequences # 1

consensus_5763#1 length = 293 sequences # 2

consensusID : consensus_5763#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 320
fasta sequence

                              [CTTCNAGTCCATTCTCGCATCAACCAAGAGACGCCACGAGCGCGAAGAANCACACGAAGCGTTCGTCAAGCAAGAACAGAGTTTGTTTGTGCCGCGATGGCGCAGGAGAGCCTGAGGCTGGTGTCGCACCCGATCGCGGCGCACGAGGGGCGGCTGCCGCGGCACTACACGCTGGAGGGGCAGGGCGCGAAGAAGGACATCTCGCCNCCGGTGGAGTGGTACGNGGTGCCCNACGTGACGCGGTCGTTGGCGCTGGTGGTGCACGACGTCGACGGCCCGGACCCGNACGGACCCATCGTGCCGTGNACGAACTGGGTCGT]

[+] EMBL C29165               [CTTCNAGTCCATTCTCGCATCAACCAAGAGACGCCACGAGCGCGAAGAANCACACGAAGCGTTCGTCAAGCAAGAACAGAGTTTGTTTGTGCCGCGATGGCGCAGGAGAGCCTGAGGCTGGTGTCGCACCCGATCGCGGCGCACGAGGGGCGGCTGCCGCGGCACTACACGCTGGAGGGGCAGGGCGCGAAGAAGGACATCTCGCCNCCGGTGGAGTGGTACGNGGTGCCCNACGTGACGCGGTCGTTGGCGCTGGTGGTGCACGACGTCGACGGCCCGGACCCGNACGGACCCATCGTGCCGTGNACGAACTGGGTCGT]




>consensus_5763#0
CTTCNAGTCCATTCTCGCATCAACCAAGAGACGCCACGAGCGCGAAGAANCACACGAAGC
GTTCGTCAAGCAAGAACAGAGTTTGTTTGTGCCGCGATGGCGCAGGAGAGCCTGAGGCTG
GTGTCGCACCCGATCGCGGCGCACGAGGGGCGGCTGCCGCGGCACTACACGCTGGAGGGG
CAGGGCGCGAAGAAGGACATCTCGCCNCCGGTGGAGTGGTACGNGGTGCCCNACGTGACG
CGGTCGTTGGCGCTGGTGGTGCACGACGTCGACGGCCCGGACCCGNACGGACCCATCGTG
CCGTGNACGAACTGGGTCGT

consensusID : consensus_5763#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 293
fasta sequence

                              [GGGCGGACGCGTGGGCGGACGCGTGGGTCGCATCAACCAAGAGACGCCACGAGCGCGAAGCGAACACACGAAGCGTTCGTCAAGCAAGAACAGAGTTTGTTTGTGCCGCGATGGCGCAGGAGAGCCTGAGGCTGGTGTCGCACCCGATCGCGGCGCACGAGGGGCGGCTGCCGCGGCACTACACGCTGGAGGGGCAGGGCGCGAAGAAGGACATCTCGCCGNCGGTGGAGTGGTACGGGGTGCCCGACGGGACGCGGTCGCTGGCGCTGGTGGTGCACGACGTTTACGCCCNG]

[+] EMBL AU093683             [GGGCGGACGCGTGGGCGGACGCGTGGGTCGCATCAACCAAGAGACGCCACGAGCGCGAAGCGAACACACGAAGCGTTCGTCAAGCAAGAACAGAGTTTGTTTGTGCCGCGATGGCGCAGGAGAGCCTGAGGCTGGTGTCGCACCCGATCGCGGCGCACGAGGGGCGGCTGCCGCGGCACTACACGCTGGAGGGGCAGGGCGCGAAGAAGGACATCTCGCCGNCGGTGGAGTGGTACGGGGTGCCCGACGGGACGCGGTCGCTGGCGCTGGTGGTGCACGACGTTTACGCCC  ]
[+] EMBL C27062               [                                TCAACCAAGAGACGCCACGAGCGCNAAG AATCACACGAAGCGTTCGTAAAGCAAGAACAGATTTTTTTTGTCCCGCGATGGCGCAGGANAGCCTGAGGCTGGTGTCGCACCCNATCGCGGCGCACGAGGGGCGGCTGCCGCGGCACTACACGCTGGAGGGGCAGGGCGCGAAGAAGGACATCTCGCCGCCGGTGGAGTGGTACGGGGTGCCCGACGGGACGCGGTCGCTGGCGCTGGTGGTGCACGACGTCGACGTCCNG]




>consensus_5763#1
GGGCGGACGCGTGGGCGGACGCGTGGGTCGCATCAACCAAGAGACGCCACGAGCGCGAAG
CGAACACACGAAGCGTTCGTCAAGCAAGAACAGAGTTTGTTTGTGCCGCGATGGCGCAGG
AGAGCCTGAGGCTGGTGTCGCACCCGATCGCGGCGCACGAGGGGCGGCTGCCGCGGCACT
ACACGCTGGAGGGGCAGGGCGCGAAGAAGGACATCTCGCCGNCGGTGGAGTGGTACGGGG
TGCCCGACGGGACGCGGTCGCTGGCGCTGGTGGTGCACGACGTTTACGCCCNG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5763#0      ------------CTTCNAGTCCATTC-TCGCATCAACCAAGAGACGCCACGAGCGCGAAG 47
consensus_5763#1      GGGCGGACGCGTGGGCGGACGCGTGGGTCGCATCAACCAAGAGACGCCACGAGCGCGAAG 60
                                     *     * *   *********************************

consensus_5763#0      -AANCACACGAAGCGTTCGTCAAGCAAGAACAGAGTTTGTTTGTGCCGCGATGGCGCAGG 106
consensus_5763#1      CGAACACACGAAGCGTTCGTCAAGCAAGAACAGAGTTTGTTTGTGCCGCGATGGCGCAGG 120
                        * ********************************************************

consensus_5763#0      AGAGCCTGAGGCTGGTGTCGCACCCGATCGCGGCGCACGAGGGGCGGCTGCCGCGGCACT 166
consensus_5763#1      AGAGCCTGAGGCTGGTGTCGCACCCGATCGCGGCGCACGAGGGGCGGCTGCCGCGGCACT 180
                      ************************************************************

consensus_5763#0      ACACGCTGGAGGGGCAGGGCGCGAAGAAGGACATCTCGCCNCCGGTGGAGTGGTACGNGG 226
consensus_5763#1      ACACGCTGGAGGGGCAGGGCGCGAAGAAGGACATCTCGCCGNCGGTGGAGTGGTACGGGG 240
                      ****************************************  *************** **

consensus_5763#0      TGCCCNACGTGACGCGGTCGTTGGCGCTGGTGGTGCACGACGTCGACGGCCCGGACCCGN 286
consensus_5763#1      TGCCCGACGGGACGCGGTCGCTGGCGCTGGTGGTGCACGACGTTTACGCCCNG------- 293
                      ***** *** ********** **********************  *** ** *       

consensus_5763#0      ACGGACCCATCGTGCCGTGNACGAACTGGGTCGT 320
consensus_5763#1      ----------------------------------