These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 906 fasta sequence [CACTCGAAGGCTCGCTCCACTCGAAGACCGAGGCGTCCACCACCACCACCACCACTCGAGTTCCCCCACGATCCCCAACCCTTCCTCCTCCGATTCGCCGCCGGTAGCTGCCAGCGTCTGCTCCCCGGCTCGCCGCGCGCCGGCCGGCGAGTGCACCGCGCGCGGGCGCTTGGTCGACGCTATCTCCGGAGTACTCCGCGTGGATTTGGGTGAATAGTGGCTCGTTTCGACAGGGTGACTTGTGCTGTGCTCGATCGCGGTCGTCGCTTGCTGTTGATCGACCGGTCCAGATCCGCGTCGTTTACACGGTGCGTGGCTGTTCCTCAATCTACGGGTGAGTGTTTTCTGAACGAATCGATCCTACCTGTTCGGGATTGCTTGTAGAAGAGACAAAAAGAGAGTGATGTTGTTTCACGCAACCGAGAATTAATTAATTAAATCGTCTGGCATGGTAGATTTTGCTGCGTGCGTAGAAAAGAGATTTCCTAAATTTGGGGATACTAGTGGACGATCGATCGAGCGCCTATTCTGTCGATCGGTTCGTGGATTCATGGCTTGAGCTCATGAGTTGGTTGGTACGTTCCCGCGTTTTGTAGATCGGACCTCGGACTCATGGAGAACCGCGTCGGTGAGTCGTCGGCGACCGCCGTCGATGGCGGCGGCGGCGCCAAGGACTCGGGCAGCTTCGAGTGCAACATCTGCCTGGAGCTAGCCCAGGACCCCGTCGTCACCCTCTGCGGCCACCTCTTCTGCTGGCCGTGCCTCTACGAGTGGCTCCACGTCCACGCGCACTCCCGCGAGTGCCCCGTCTGCAAGGCCGGCCTCGAGGAGGAGAAGCTCGTCCCCCTCTACGGCCGCGGCAAGGCCTCCACCGATCCCCGCTCCAGGTCGGTGGCCGGCGTCCAG] [+] EMBL AK070278 [CACTCGAAGGCTCGCTCCACTCGAAGACCGAGGCGTCCACCACCACCACCACCACTCGAGTTCCCCCACGATCCCCAACCCTTCCTCCTCCGATTCGCCGCCGGTAGCTGCCAGCGTCTGCTCCCCGGCTCGCCGCGCGCCGGCCGGCGAGTGCACCGCGCGCGGGCGCTTGGTCGACGCTATCTCCGGAGTACTCCGCGTGGATTTGGGTGAATAGTGGCTCGTTTCGACAGGGTGACTTGTGCTGTGCTCGATCGCGGTCGTCGCTTGCTGTTGATCGACCGGTCCAGATCCGCGTCGTTTACACGGTGCGTGGCTGTTCCTCAATCTACGGGTGAGTGTTTTCTGAACGAATCGATCCTACCTGTTCGGGATTGCTTGTAGAAGAGACAAAAAGAGAGTGATGTTGTTTCACGCAACCGAGAATTAATTAATTAAATCGTCTGGCATGGTAGATTTTGCTGCGTGCGTAGAAAAGAGATTTCCTAAATTTGGGGATACTAGTGGACGATCGATCGAGCGCCTATTCTGTCGATCGGTTCGTGGATTCATGGCTTGAGCTCATGAGTTGGTTGGTACGTTCCCGCGTTTTGTAGATCGGACCTCGGACTCATGGAGAACCGCGTCGGTGAGTCGTCGGCGACCGCCGTCGATGGCGGCGGCGGCGCCAAGGACTCGGGCAGCTTCGAGTGCAACATCTGCCTGGAGCTAGCCCAGGACCCCGTCGTCACCCTCTGCGGCCACCTCTTCTGCTGGCCGTGCCTCTACGAGTGGCTCCACGTCCACGCGCACTCCCGCGAGTGCCCCGTCTGCAAGGCCGGCCTCGAGGAGGAGAAGCTCGTCCCCCTCTACGGCCGCGGCAAGGCCTCCACCGATCCCCGCTCCAGGTCGGTGGCCGGCGTCCAG] consensusID : consensus_5771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 560 fasta sequence [AGTTCCCCCACGATCCCCAACCCTTCCTCCTCCGATTCGCCGCCGGTAGCTGCCAGCGTCTGCTCCCCGGCTCGCCGCGCGCCGGCCGGCGAGTGCACCGCGCGCGGGCGCTTGGTCGACGCTATCTCCGGAGTACTCCGCGTGGATTTGGGTGAATAGTGGCTCGTTTCGACAGGGTGACTTGTGCTGTGCTCGATCGCGGTCGTCGCTTGCTGTTGATCGACCGGTCCAGATCCGCGTCGTTTACACGATCGGACCTCGGACTCATGGAGAACCGCGTCGGTGAGTCGTCGGCGACCGCCGTCGATGGCGGCGGCGGCGCCAAGGACTCGGGCAGCTTCGAGTGCAACATCTGCCTGGAGCTAGCCCAGGACCCCGTCGTCACCCTCTGCGGCCACCTCTTCTGCTGGCCGTGCCTCTACGAGTGGCTCCACGTCCACGCGCACTCCCGCGAGTGCCCCGTCTGCAAGGCCGGCCTCGAGGAGGAGAAGCTCGTCCCCCTCTACGGCCGCGGCAAGGCCTCCACCGATCCCCGCTCCAGGTCGGTGGCCGGCGTCCAG] [+] EMBL CB655869 [AGTTCCCCCACGATCCCCAACCCTTCCTCCTCCGATTCGCCGCCGGTAGCTGCCAGCGTCTGCTCCCCGGCTCGCCGCGCGCCGGCCGGCGAGTGCACCGCGCGCGGGCGCTTGGTCGACGCTATCTCCGGAGTACTCCGCGTGGATTTGGGTGAATAGTGGCTCGTTTCGACAGGGTGACTTGTGCTGTGCTCGATCGCGGTCGTCGCTTGCTGTTGATCGACCGGTCCAGATCCGCGTCGTTTACACGATCGGACCTCGGACTCATGGAGAACCGCGTCGGTGAGTCGTCGGCGACCGCCGTCGATGGCGGCGGCGGCGCCAAGGACTCGGGCAGCTTCGAGTGCAACATCTGCCTGGAGCTAGCCCAGGACCCCGTCGTCACCCTCTGCGGCCACCTCTTCTGCTGGCCGTGCCTCTACGAGTGGCTCCACGTCCACGCGCACTCCCGCGAGTGCCCCGTCTGCAAGGCCGGCCTCGAGGAGGAGAAGCTCGTCCCCCTCTACGGCCGCGGCAAGGCCTCCACCGATCCCCGCTCCAGGTCGGTGGCCGGCGTCCAG] consensusID : consensus_5771#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence [GCGTGGATTTGGGTGAATAGTGGCTCGTTTCGACAGGGTGACTTGTGCTGTGCTCGATCGCGGTCGTCGCTTGCTGTTGATCGACCGGTCCAGATCCGCGTCGTTTACACGGTGCGTGGCTGTTCCTCAATCTACGGGTGAGTGTTTTCTGAACGAATCGATCCTACCTGTTCGGGATTGCTTGTAGAAGAGACAAAAAGAGAGTGATGTTGTTTCACGCAACCGAGAATTAATTAATTAAAAAAAAAAAAA] [+] EMBL CF316516 [GCGTGGATTTGGGTGAATAGTGGCTCGTTTCGACAGGGTGACTTGTGCTGTGCTCGATCGCGGTCGTCGCTTGCTGTTGATCGACCGGTCCAGATCCGCGTCGTTTACACGGTGCGTGGCTGTTCCTCAATCTACGGGTGAGTGTTTTCTGAACGAATCGATCCTACCTGTTCGGGATTGCTTGTAGAAGAGACAAAAAGAGAGTGATGTTGTTTCACGCAACCGAGAATTAATTAATTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5771#0 CACTCGAAGGCTCGCTCCACTCGAAGACCGAGGCGTCCACCACCACCACCACCACTCGAG 60 consensus_5771#1 ----------------------------------------------------------AG 2 consensus_5771#2 ------------------------------------------------------------ consensus_5771#0 TTCCCCCACGATCCCCAACCCTTCCTCCTCCGATTCGCCGCCGGTAGCTGCCAGCGTCTG 120 consensus_5771#1 TTCCCCCACGATCCCCAACCCTTCCTCCTCCGATTCGCCGCCGGTAGCTGCCAGCGTCTG 62 consensus_5771#2 ------------------------------------------------------------ consensus_5771#0 CTCCCCGGCTCGCCGCGCGCCGGCCGGCGAGTGCACCGCGCGCGGGCGCTTGGTCGACGC 180 consensus_5771#1 CTCCCCGGCTCGCCGCGCGCCGGCCGGCGAGTGCACCGCGCGCGGGCGCTTGGTCGACGC 122 consensus_5771#2 ------------------------------------------------------------ consensus_5771#0 TATCTCCGGAGTACTCCGCGTGGATTTGGGTGAATAGTGGCTCGTTTCGACAGGGTGACT 240 consensus_5771#1 TATCTCCGGAGTACTCCGCGTGGATTTGGGTGAATAGTGGCTCGTTTCGACAGGGTGACT 182 consensus_5771#2 ------------------------------------------------------------ consensus_5771#0 TGTGCTGTGCTCGATCGCGGTCGTCGCTTGCTGTTGATCGACCGGTCCAGATCCGCGTCG 300 consensus_5771#1 TGTGCTGTGCTCGATCGCGGTCGTCGCTTGCTGTTGATCGACCGGTCCAGATCCGCGTCG 242 consensus_5771#2 ------------------------------------------------------------ consensus_5771#0 TTTACACGGTGCGTGGCTGTTCCTCAATCTACGGGTGAGTGTTTTCTGAACGAATCGATC 360 consensus_5771#1 TTTACACG---------------------------------------------------- 250 consensus_5771#2 ------------------------------------------------------------ consensus_5771#0 CTACCTGTTCGGGATTGCTTGTAGAAGAGACAAAAAGAGAGTGATGTTGTTTCACGCAAC 420 consensus_5771#1 ------------------------------------------------------------ consensus_5771#2 ------------------------------------------------------------ consensus_5771#0 CGAGAATTAATTAATTAAATCGTCTGGCATGGTAGATTTTGCTGCGTGCGTAGAAAAGAG 480 consensus_5771#1 ------------------------------------------------------------ consensus_5771#2 ------------------------------------------------------------ consensus_5771#0 ATTTCCTAAATTTGGGGATACTAGTGGACGATCGATCGAGCGCCTATTCTGTCGATCGGT 540 consensus_5771#1 ------------------------------------------------------------ consensus_5771#2 ------------------------------------------------------------ consensus_5771#0 TCGTGGATTCATGGCTTGAGCTCATGAGTTGGTTGGTACGTTCCCGCGTTTTGTAGATCG 600 consensus_5771#1 --------------------------------------------------------ATCG 254 consensus_5771#2 ------------------------------------------------------------ consensus_5771#0 GACCTCGGACTCATGGAGAACCGCGTCGGTGAGTCGTCGGCGACCGCCGTCGATGGCGGC 660 consensus_5771#1 GACCTCGGACTCATGGAGAACCGCGTCGGTGAGTCGTCGGCGACCGCCGTCGATGGCGGC 314 consensus_5771#2 ------------------------------------GCGTGGATTTGGGTGAATAGTGGC 24 ** ** ** ** * *** consensus_5771#0 G-GCGGCGCCAAGG--ACTCGGGCAGC-TTCGAGTGCAACATCTGCCTGGAGCTAGCCCA 716 consensus_5771#1 G-GCGGCGCCAAGG--ACTCGGGCAGC-TTCGAGTGCAACATCTGCCTGGAGCTAGCCCA 370 consensus_5771#2 TCGTTTCGACAGGGTGACTTGTGCTGTGCTCGATCGCGGTCGTCGCTTGCTGTTGATCGA 84 * ** ** ** *** * ** * **** ** ** ** * * * * consensus_5771#0 GGACCCCGTCGTCACCCTCTGCGGCCACCTCTTCTGCTGGCCGTGCCTCTACGAGTGGCT 776 consensus_5771#1 GGACCCCGTCGTCACCCTCTGCGGCCACCTCTTCTGCTGGCCGTGCCTCTACGAGTGGCT 430 consensus_5771#2 ----CCGGTCCAGATCCGCGTCGTTTACACGGTGCG-TGGCTGTTCCTCAATCTACGGGT 139 ** *** * ** * ** ** * * **** ** **** * ** * consensus_5771#0 CCACGTCCACGCGCACTCCCGCGAGTGCCCCGTCTGCAAGGCCGGCCTCGAGGAGGAGAA 836 consensus_5771#1 CCACGTCCACGCGCACTCCCGCGAGTGCCCCGTCTGCAAGGCCGGCCTCGAGGAGGAGAA 490 consensus_5771#2 GAGTGTTTTCTGAACGAATCGATCCTACCTGTTCGGGATTGCTTGTAGAAGAGACAAAAA 199 ** * ** * ** ** * * ** * ** * ** consensus_5771#0 GCTCGTCCCCCTCTACGGCCGCGGCAAGGCCTCCACCGATCCCCGCTCCAGGTCGGTGGC 896 consensus_5771#1 GCTCGTCCCCCTCTACGGCCGCGGCAAGGCCTCCACCGATCCCCGCTCCAGGTCGGTGGC 550 consensus_5771#2 GAGAGTGATGTTGTTTCAC-GCAACCGAGAATTAATTAATTAAAAAAAAAAAAA------ 252 * ** * * * ** * * * * ** * consensus_5771#0 CGGCGTCCAG 906 consensus_5771#1 CGGCGTCCAG 560 consensus_5771#2 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||