These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [GCCTGCCCTTGCCGGTGATCTGATCGATATCGGCAGTCAGCCATACATCGATCGAGCGGCAAAGCGCCTATAGCTGCTGCAAGACATGTCGGACGGCACGGCCAACTGCATCGACATCCTCATCGCCATCATCCTCCCTCCTCTCGGCGTCTTCCTCAAGTTCGGATGCAAGGTGGAGTTCTGGCTCTGTCTTCTGCTCACCTTCTTCGGCTATCTCCCGGGGATCATCTACGCGGTCTATGCTATCACCAAGCCTCTGGGCTACTTCACGTCATAAGGGAGAAGAATTCTTGTGCAATCAGTGTTGAGTGCTTTGCCGACCTTTCATCTAACTGCCCTTCAAGCTCCCAAATGGGTAATCAGTAGAATAGATCGTTACCGCAGATCCTTCTTATGGAAGGGAGAAGACCCTGACAAAACAAATCCGGGAAGTAGCTTGGTAAATTGGGTACAGTCTGTACACCAAAAATTTTAGGAGGCCTTGGAATTCCAGACCTTGAGAAATTTTTTCGCGCTCTAAGACTACGGTGGCTCTGGTTCAAATGGAAAGAGGACAACAAGCCTTGGGTTGGAATGGATTTACCTTGCGATGACTGCGACAAAAGACTCTTTCAGGCTGCCACTACGATAAATGTCGGCAATGGAGAAAAAATAAATTTTTGGCATGATAAGTGGCTGCAA] [+] EMBL CB678398 [GCCTGCCCTTGCCGGTGATCTGATCGATATCGGCAGTCAGCCATACATCGATCGAGCGGCAAAGCGCCTATAGCTGCTGCAAGACATGTCGGACGGCACGGCCAACTGCATCGACATCCTCATCGCCATCATCCTCCCTCCTCTCGGCGTCTTCCTCAAGTTCGGATGCAAGGTGGAGTTCTGGCTCTGTCTTCTGCTCACCTTCTTCGGCTATCTCCCGGGGATCATCTACGCGGTCTATGCTATCACCAAGCCTCTGGGCTACTTCACGTCATAAGGGAGAAGAATTCTTGTGCAATCAGTGTTGAGTGCTTTGCCGACCTTTCATCTAACTGCCCTTCAAGCTCCCAAATGGGTAATCAGTAGAATAGATCGTTACCGCAGATCCTTCTTATGGAAGGGAGAAGACCCTGACAAAACAAATCCGGGAAGTAGCTTGGTAAATTGGGTACAGTCTGTACACCAAAAATTTTAGGAGGCCTTGGAATTCCAGACCTTGAGAAATTTTTTCGCGCTCTAAGACTACGGTGGCTCTGGTTCAAATGGAAAGAGGACAACAAGCCTTGGGTTGGAATGGATTTACCTTGCGATGACTGCGACAAAAGACTCTTTCAGGCTGCCACTACGATAAATGTCGGCAATGGAGAAAAAATAAATTTTTGGCATGATAAGTGGCTGCAA] consensusID : consensus_578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [GGTGGAGTTCTGGCTCTGTCTTCTGCTCACCTTCTTCGGCTATCTCCCGGGGATCATCTACGCGGTCTATGCTATCACCAAGTAGTAGTTACATCTCATCTTTACTATACATCTAAGGTGATTGAAGCTAGCTAGTAGTACTAGTGAAACCTGTCTTGCGTCTATGTATCGATTCATGTGGTCTACGTACGTACTGGATCTCAACTACTTGATCTGTATCGGTTCATGATCAGGCCTCTGGGCTACTTCACGTCATAAGGGAGAAGAATTCTTGTGCAATCAGTGTTGAGTGCTTTGCCGACCTTTCATCTAACTGCCCTTCAAGCTCCCAAATGGGTAATCAGTAGAATAGATCGTTACCGCAGATCCTTCTTATGGAAGGGAGAAGACCCTGACAAAACAAATCCGGGAAGTAGCTTGGTAAATTGGGTACAGTCTGTAGACCAAAAATTTTAGGAGGCCTTGGAATTCCAGACCTTGAGAAATTTTTTCGCGCTCTAAGACTACGGTGGCTCTGGTTCAAATGGAAAGAGGACAACAAGCCTTGGGTTGGAATGGATTTACCTTGCGA] [+] EMBL AK058343 [GGTGGAGTTCTGGCTCTGTCTTCTGCTCACCTTCTTCGGCTATCTCCCGGGGATCATCTACGCGGTCTATGCTATCACCAAGTAGTAGTTACATCTCATCTTTACTATACATCTAAGGTGATTGAAGCTAGCTAGTAGTACTAGTGAAACCTGTCTTGCGTCTATGTATCGATTCATGTGGTCTACGTACGTACTGGATCTCAACTACTTGATCTGTATCGGTTCATGATCAGGCCTCTGGGCTACTTCACGTCATAAGGGAGAAGAATTCTTGTGCAATCAGTGTTGAGTGCTTTGCCGACCTTTCATCTAACTGCCCTTCAAGCTCCCAAATGGGTAATCAGTAGAATAGATCGTTACCGCAGATCCTTCTTATGGAAGGGAGAAGACCCTGACAAAACAAATCCGGGAAGTAGCTTGGTAAATTGGGTACAGTCTGTAGACCAAAAATTTTAGGAGGCCTTGGAATTCCAGACCTTGAGAAATTTTTTCGCGCTCTAAGACTACGGTGGCTCTGGTTCAAATGGAAAGAGGACAACAAGCCTTGGGTTGGAATGGATTTACCTTGCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_578#0 GCCTGCCCTTGCCGGTGATCTGATCGATATCGGCAGTCAGCCATACATCGATCGAGCGGC 60 consensus_578#1 ----------GGTGGAGTTCTGGCTC-TGTCTTCTGCTCACCTT-CTTCGGCTATCTCCC 48 * ** * **** * ** * * ** * * *** * consensus_578#0 AAAGCGCCTATAGCTGCTGCAAGACATGTCGGACGGCACGGCCAACTGCATCGACATCCT 120 consensus_578#1 GGGGATCATCTACGCGGTCTATGCTAT-----------CACCAAGTAGTAGTTACATC-T 96 * * * ** * * * * ** * * * * * ***** * consensus_578#0 CATCGCCATCATCCTCCCTCCTC--TCGGCGTCTTCCTCAAGTTCGGATGCAAGGTGGAG 178 consensus_578#1 CATCTTTACTATACATCTAAGGTGATTGAAGCTAGCTAGTAGTACTAGTGAAACCTG--- 153 **** * ** * * * * * * *** * ** ** ** consensus_578#0 TTCTGGCTCTGTCT-TCTGCTCACCTTCTTCGGCTATCTCCCGGGGATCATCTACGCGGT 237 consensus_578#1 TCTTGCGTCTATGTATCGATTCATGTGGTCTACGTACGTACTGGATCTCAACTACTTGAT 213 * ** *** * * ** *** * * ** * * ** *** **** * * consensus_578#0 CTATGCT-----ATCACCAAGCCTCTGGGCTACTTCACGTCATAAGGGAGAAGAATTCTT 292 consensus_578#1 CTGTATCGGTTCATGATCAGGCCTCTGGGCTACTTCACGTCATAAGGGAGAAGAATTCTT 273 ** * ** * ** **************************************** consensus_578#0 GTGCAATCAGTGTTGAGTGCTTTGCCGACCTTTCATCTAACTGCCCTTCAAGCTCCCAAA 352 consensus_578#1 GTGCAATCAGTGTTGAGTGCTTTGCCGACCTTTCATCTAACTGCCCTTCAAGCTCCCAAA 333 ************************************************************ consensus_578#0 TGGGTAATCAGTAGAATAGATCGTTACCGCAGATCCTTCTTATGGAAGGGAGAAGACCCT 412 consensus_578#1 TGGGTAATCAGTAGAATAGATCGTTACCGCAGATCCTTCTTATGGAAGGGAGAAGACCCT 393 ************************************************************ consensus_578#0 GACAAAACAAATCCGGGAAGTAGCTTGGTAAATTGGGTACAGTCTGTACACCAAAAATTT 472 consensus_578#1 GACAAAACAAATCCGGGAAGTAGCTTGGTAAATTGGGTACAGTCTGTAGACCAAAAATTT 453 ************************************************ *********** consensus_578#0 TAGGAGGCCTTGGAATTCCAGACCTTGAGAAATTTTTTCGCGCTCTAAGACTACGGTGGC 532 consensus_578#1 TAGGAGGCCTTGGAATTCCAGACCTTGAGAAATTTTTTCGCGCTCTAAGACTACGGTGGC 513 ************************************************************ consensus_578#0 TCTGGTTCAAATGGAAAGAGGACAACAAGCCTTGGGTTGGAATGGATTTACCTTGCGATG 592 consensus_578#1 TCTGGTTCAAATGGAAAGAGGACAACAAGCCTTGGGTTGGAATGGATTTACCTTGCGA-- 571 ********************************************************** consensus_578#0 ACTGCGACAAAAGACTCTTTCAGGCTGCCACTACGATAAATGTCGGCAATGGAGAAAAAA 652 consensus_578#1 ------------------------------------------------------------ consensus_578#0 TAAATTTTTGGCATGATAAGTGGCTGCAA 681 consensus_578#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||