cluster # 5782

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Oryza sativa
cluster # 5782 cluster # 5782 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5782#0 length = 376 sequences # 2

consensus_5782#1 length = 289 sequences # 1

consensusID : consensus_5782#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 376
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATATATATAGGCCGGGGCTTCCATATTTTTAATTCACATAGGCCTCACCCAACAACATATAGGCGGAGCAAATCCCCCTTTTACTTCAAGTCAAAAAGAGATCGGGGGAAACAAAAACAAAAGCAGAGCCCGGCCGGTAAAATCAAAAGACGATGAACAACCGGGGAACCCCCAAAACAGGGGGGGAAACTTCTTCGAATCAGAGATGAACATTTAAACAGGGGTTTTTTTGACGATGACGGTTTATTTGCCACCAAACTCCTCGAAACCCGGGGGCTTGTAGGCAAAAAACCTGATGACCTGCCCCTGCCTGACGTTGTCAAACCCGATGA]

[+] EMBL CF298842             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATATATATAGGCCGGGGCTTCCATATTTTTAATTCACATAGGCCTCACCCAACAACATATAGGCGGAGCAAATCCCCCTTTTACTTCAAGTCAAAAAGAGATCGGGGGAAACAAAAACAAAAGCAGAGCCCGGCCGGTAAAATCAAAAGACGATGAACAACCGGGGAACCCCCAAAACAGGGGGGGAAACTTCTTCGAATCAGAGATGAACATTTAAACAGGGGTTTTTTTGACGATGACGGTTTATTTGCCACCAAACTCCTCGAAACCCGGGGGCTTGTAGGCAAAAAACCTGATGACCTGCCCCTGCCTGACGTTGTCAAACCCGATGA]
[+] EMBL CF333170             [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAATATAGGCCGGAGCTTCCATATTTTTCATTCACATATGCCTCACCCAACAACATATAGGCGGAGCAAATCCCACTTTTACTTCAAGTCAAAAAGAGATCGGGGGAAACAAAAACAAAAGCAGAGCCCGGGCGGTAAAATCAAAAGACGATGAACAAACGGGGAACCCCCGAAACAGGGGGGGAGACATCTTCGAATCAAAGATGAACAATTAAACAGGGGTTTTTTTGACGATGACGGGTTATTTGCCACCAAACTCCTTGAAACCCGGGGGCTTGTAGGCGAAAAACCTGATGACCTGCCCCTGCCTGACGTTGTCAAACCCGATGA]




>consensus_5782#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATATATATAGGCCGGG
GCTTCCATATTTTTAATTCACATAGGCCTCACCCAACAACATATAGGCGGAGCAAATCCC
CCTTTTACTTCAAGTCAAAAAGAGATCGGGGGAAACAAAAACAAAAGCAGAGCCCGGCCG
GTAAAATCAAAAGACGATGAACAACCGGGGAACCCCCAAAACAGGGGGGGAAACTTCTTC
GAATCAGAGATGAACATTTAAACAGGGGTTTTTTTGACGATGACGGTTTATTTGCCACCA
AACTCCTCGAAACCCGGGGGCTTGTAGGCAAAAAACCTGATGACCTGCCCCTGCCTGACG
TTGTCAAACCCGATGA

consensusID : consensus_5782#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 289
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCCGGGGCTTCCATTTTTTTAATTCACATATGCCCCACCCAACAACATATAGGCGGAGCAAATCCCCCTTTTACTTTAAGTCAAAAAGAGATCGGGGGAAACAAAAACAAAAGCCGAGCCCGGGCGGGAAAATCAAAAGACGATGAACAAACGGGGAACCCCCGAAACAGGGGGGGAAACATCTTCGAATCAAAGATGAACAATTAAACAGGGGTTTTTTTGACGAAGACGGGTTATTT]

[+] EMBL CF300063             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCCGGGGCTTCCATTTTTTTAATTCACATATGCCCCACCCAACAACATATAGGCGGAGCAAATCCCCCTTTTACTTTAAGTCAAAAAGAGATCGGGGGAAACAAAAACAAAAGCCGAGCCCGGGCGGGAAAATCAAAAGACGATGAACAAACGGGGAACCCCCGAAACAGGGGGGGAAACATCTTCGAATCAAAGATGAACAATTAAACAGGGGTTTTTTTGACGAAGACGGGTTATTT]




>consensus_5782#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCCGGGGCTT
CCATTTTTTTAATTCACATATGCCCCACCCAACAACATATAGGCGGAGCAAATCCCCCTT
TTACTTTAAGTCAAAAAGAGATCGGGGGAAACAAAAACAAAAGCCGAGCCCGGGCGGGAA
AATCAAAAGACGATGAACAAACGGGGAACCCCCGAAACAGGGGGGGAAACATCTTCGAAT
CAAAGATGAACAATTAAACAGGGGTTTTTTTGACGAAGACGGGTTATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5782#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATATATATAGGCCGGG 60
consensus_5782#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT----TTTTTTTTAGCCGGG 56
                      *****************************************    * * * *  ******

consensus_5782#0      GCTTCCATATTTTTAATTCACATAGGCCTCACCCAACAACATATAGGCGGAGCAAATCCC 120
consensus_5782#1      GCTTCCATTTTTTTAATTCACATATGCCCCACCCAACAACATATAGGCGGAGCAAATCCC 116
                      ******** *************** *** *******************************

consensus_5782#0      CCTTTTACTTCAAGTCAAAAAGAGATCGGGGGAAACAAAAACAAAAGCAGAGCCCGGCCG 180
consensus_5782#1      CCTTTTACTTTAAGTCAAAAAGAGATCGGGGGAAACAAAAACAAAAGCCGAGCCCGGGCG 176
                      ********** ************************************* ******** **

consensus_5782#0      GTAAAATCAAAAGACGATGAACAACCGGGGAACCCCCAAAACAGGGGGGGAAACTTCTTC 240
consensus_5782#1      GGAAAATCAAAAGACGATGAACAAACGGGGAACCCCCGAAACAGGGGGGGAAACATCTTC 236
                      * ********************** ************ **************** *****

consensus_5782#0      GAATCAGAGATGAACATTTAAACAGGGGTTTTTTTGACGATGACGGTTTATTTGCCACCA 300
consensus_5782#1      GAATCAAAGATGAACAATTAAACAGGGGTTTTTTTGACGAAGACGGGTTATTT------- 289
                      ****** ********* *********************** ***** ******       

consensus_5782#0      AACTCCTCGAAACCCGGGGGCTTGTAGGCAAAAAACCTGATGACCTGCCCCTGCCTGACG 360
consensus_5782#1      ------------------------------------------------------------
                                                                                  

consensus_5782#0      TTGTCAAACCCGATGA 376
consensus_5782#1      ----------------