These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5783#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 483 fasta sequence [CCTCACTCTCTTTCTTTCCTTAACTCTCTTTCTCTCCTCTCCACTCCTCCTAGGGCGGCGGTGGCAGGAGCTGGCAGCGGCGACGGCTAGGGTTTCTTTTTTTGAATTCTTTTTGGAATTTTTTTTTCGCGATTTAGTGGGTGGCCGGCATCGATGGTGTGGCCAGTGGCCGGCGTCGTCCGCGTCGT-CTGTGGTGGTG-GCGGCGGCGAAAATGGTGGGGGCGAGGACGGAGCGAGAGAGGAAGGGCGGCGAGATGGCGGGGGCGAGGTCGCGAGGAGCCGACTAGCCGAGGACAGCGGCCAGTAGTGGTGCGCTCGACCCCTGGATGCGCCGCTCCGCCGCCGCCTCTCTCTCTCTCTCTCTCCTCTCTAAGGTTAGCCAGTTAGGGACTTGGGTTGGGCTGGGAACTTGGGGAGGAATTATGGACTATTTGGATGGATCTTTTTAATTTCAGAAATTCCGACAAACTTTCCGGAAAAAAAA] [+] EMBL AK108013 [CCTCACTCTCTTTCTTTCCTTAACTCTCTTTCTCTCCTCTCCACTCCTCCTAGGGCGGCGGTGGCAGGAGCTGGCAGCGGCGACGGCTAGGGTTTCTTTTTTTGAATTCTTTTTGGAATTTTTTTTTCGCGATTTAGTGGGTGGCCGGCATCGATGGTGTGGCCAGTGGCCGGCGTCGTCCGCGTCGT CTGTGGTGGTG GCGGCGGCGAAAATGGTGGGGGCGAGGACGGAGCGAGAGAGGAAGGGCGGCGAGATGGCGGGGGCGAGGTCGCGAGGAGCCGACTAGCCGAGGACAGCGGCCAGTAGTGGTGCGCTCGACCCCTGGATGCGCCGCTCCGCCGCCGCCTCTCTCTCTCTCTCTCTCCTCTCTAAGGTTAGCCAGTTAGGGACTTGGGTTGGGCTGGGAACTTGGGGAGGAATTATGGACTATTTGGATGGATCTTTTTAATTTCAGAAATTCCGACA ] [+] EMBL AU093728 [ TCCGCGTCGTNCTGTGGTGGTGCGCGGCGGCGAAAATGGTGGGGGCGAGGACGGAGCGAGAGAGGAAGGGCGGCGAGATGGCGGGGGCGAGGTCGCGAGGAGCCGACTAGCCGAGGACAGCGGCCAGTAGTGGTGCGCTCGACCCCTGGATGCGCCCNTCCGCCGCCGCCTCTCTCTCTCTCTCTCTCCTCTCTAAGGTTAGCCAGTTAGGGACTTGGGTTGGGCTGGGAACTTGGGGAGGAATTATGGACTATTTGGATGGATCTTTTTAATTTCAGAAATTCCGACAAACTTTCCGGAAAAAAAA] consensusID : consensus_5783#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [AGGCGGGGGCAGGTGGCGGCGAGAGCGGCCGGCNAGCTCGGGCNACGGCTAGGGTTTCTTTTTTTAAATTCTTTTTGGAATTTTTTTTTCGCGATTTAGTGGGTGGCCGGCATCGATGGTGTGGCCAGTGGCCGGCNTCGTCCGCTTCGTCTNTGGTGGTGGCGGCGGCGAAAATGGTGGGGGCGAGGACGGAGCGAGAGAGGAAGGGCGGCGAGATGGCGGGGGCNAGGTCGCNAGGAGCCGACTAGCCNAGGACAGCGGCCAGTAGTGGTGCGCTCNACCCCTTGGATGCGNC] [+] EMBL C71668 [AGGCGGGGGCAGGTGGCGGCGAGAGCGGCCGGCNAGCTCGGGCNACGGCTAGGGTTTCTTTTTTTAAATTCTTTTTGGAATTTTTTTTTCGCGATTTAGTGGGTGGCCGGCATCGATGGTGTGGCCAGTGGCCGGCNTCGTCCGCTTCGTCTNTGGTGGTGGCGGCGGCGAAAATGGTGGGGGCGAGGACGGAGCGAGAGAGGAAGGGCGGCGAGATGGCGGGGGCNAGGTCGCNAGGAGCCGACTAGCCNAGGACAGCGGCCAGTAGTGGTGCGCTCNACCCCTTGGATGCGNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5783#0 CCTCACTCTCTTTCTTTCCTTAACTCTCTTTCTCTCCTCTCCACTCCTCCTAGGGCGGCG 60 consensus_5783#1 ------------------------------------------AGGCGGGGGCAGGTGGCG 18 * * ** **** consensus_5783#0 GTGGCAGGAGCTGGCAGC----GGCGACGGCTAGGGTTTCTTTTTTTGAATTCTTTTTGG 116 consensus_5783#1 GCGAGAGCGGCCGGCNAGCTCGGGCNACGGCTAGGGTTTCTTTTTTTAAATTCTTTTTGG 78 * * ** ** *** *** ********************* ************ consensus_5783#0 AATTTTTTTTTCGCGATTTAGTGGGTGGCCGGCATCGATGGTGTGGCCAGTGGCCGGCGT 176 consensus_5783#1 AATTTTTTTTTCGCGATTTAGTGGGTGGCCGGCATCGATGGTGTGGCCAGTGGCCGGCNT 138 ********************************************************** * consensus_5783#0 CGTCCGCGTCGTCTGTGGTGGTGGCGGCGGCGAAAATGGTGGGGGCGAGGACGGAGCGAG 236 consensus_5783#1 CGTCCGCTTCGTCTNTGGTGGTGGCGGCGGCGAAAATGGTGGGGGCGAGGACGGAGCGAG 198 ******* ****** ********************************************* consensus_5783#0 AGAGGAAGGGCGGCGAGATGGCGGGGGCGAGGTCGCGAGGAGCCGACTAGCCGAGGACAG 296 consensus_5783#1 AGAGGAAGGGCGGCGAGATGGCGGGGGCNAGGTCGCNAGGAGCCGACTAGCCNAGGACAG 258 **************************** ******* *************** ******* consensus_5783#0 CGGCCAGTAGTGGTGCGCTCGACCCCT-GGATGCGCCGCTCCGCCGCCGCCTCTCTCTCT 355 consensus_5783#1 CGGCCAGTAGTGGTGCGCTCNACCCCTTGGATGCGNC----------------------- 295 ******************** ****** ******* * consensus_5783#0 CTCTCTCTCCTCTCTAAGGTTAGCCAGTTAGGGACTTGGGTTGGGCTGGGAACTTGGGGA 415 consensus_5783#1 ------------------------------------------------------------ consensus_5783#0 GGAATTATGGACTATTTGGATGGATCTTTTTAATTTCAGAAATTCCGACAAACTTTCCGG 475 consensus_5783#1 ------------------------------------------------------------ consensus_5783#0 AAAAAAAA 483 consensus_5783#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||