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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5785 cluster # 5785       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5785#0 length = 421 sequences # 1  
consensus_5785#1 length = 215 sequences # 1  
consensus_5785#2 length = 177 sequences # 1  

consensusID : consensus_5785#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 421
fasta sequence
                              [AGAAGAAGAAGACGCGAAGTCGNGGGCGCGGCCATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGCCGCATTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTCCCGGAGCTTGGGTCGGGGNCGAGGGACCCCGNCGGCGCGCGGCGGCAGCGGCGGCGGCGTCACAGCGGAGGNCGGCGATGNCGTCGNCGGGGGCGGCGGCGCACAGCCCCGTCGTCCGCGGTGCAGGGGCTCTTCGAGGCGTGCCGCGAGGTCTTCGGTGCTCCGCCGGCGCGGTGCCCTCGTCCGCCGGGGTCGAGAGGATCAAGTCCGTTCTTGATANNATTTAAGCGGANATGTCAAGCTAACTCGAAACATGTCATATTTCCGGGGGNTAATTCAATGGAATTCTAAAATAACTAATTANACTTTATGA]

[+] EMBL AU069374             [AGAAGAAGAAGACGCGAAGTCGNGGGCGCGGCCATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGCCGCATTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTCCCGGAGCTTGGGTCGGGGNCGAGGGACCCCGNCGGCGCGCGGCGGCAGCGGCGGCGGCGTCACAGCGGAGGNCGGCGATGNCGTCGNCGGGGGCGGCGGCGCACAGCCCCGTCGTCCGCGGTGCAGGGGCTCTTCGAGGCGTGCCGCGAGGTCTTCGGTGCTCCGCCGGCGCGGTGCCCTCGTCCGCCGGGGTCGAGAGGATCAAGTCCGTTCTTGATANNATTTAAGCGGANATGTCAAGCTAACTCGAAACATGTCATATTTCCGGGGGNTAATTCAATGGAATTCTAAAATAACTAATTANACTTTATGA]


>consensus_5785#0 AGAAGAAGAAGACGCGAAGTCGNGGGCGCGGCCATTCTCCGATCCCCAGCTCGCCTTCCA AGCCGCCGCATTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTCCCGGAGCTTGGG TCGGGGNCGAGGGACCCCGNCGGCGCGCGGCGGCAGCGGCGGCGGCGTCACAGCGGAGGN CGGCGATGNCGTCGNCGGGGGCGGCGGCGCACAGCCCCGTCGTCCGCGGTGCAGGGGCTC TTCGAGGCGTGCCGCGAGGTCTTCGGTGCTCCGCCGGCGCGGTGCCCTCGTCCGCCGGGG TCGAGAGGATCAAGTCCGTTCTTGATANNATTTAAGCGGANATGTCAAGCTAACTCGAAA CATGTCATATTTCCGGGGGNTAATTCAATGGAATTCTAAAATAACTAATTANACTTTATG A



consensusID : consensus_5785#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 215
fasta sequence
                              [TTACGACNNGNCAGNCCTCCTCTTTATNCCANNCGAGGAAGAACCCAAGANCGAAGAAGAAGAAGACGCGAANTCNGGGNGCGGACATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGCCGCATTCCCCCGCCGTTAATGCGGGTGGAGGCCGGGGGNCTCCCGGAGCTTGGTTCGGGGGCGAGGNACCCAGNCGGNNCNNGGNGGCANCGGCGG]

[+] EMBL AU067896             [TTACGACNNGNCAGNCCTCCTCTTTATNCCANNCGAGGAAGAACCCAAGANCGAAGAAGAAGAAGACGCGAANTCNGGGNGCGGACATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGCCGCATTCCCCCGCCGTTAATGCGGGTGGAGGCCGGGGGNCTCCCGGAGCTTGGTTCGGGGGCGAGGNACCCAGNCGGNNCNNGGNGGCANCGGCGG]


>consensus_5785#1 TTACGACNNGNCAGNCCTCCTCTTTATNCCANNCGAGGAAGAACCCAAGANCGAAGAAGA AGAAGACGCGAANTCNGGGNGCGGACATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGCC GCATTCCCCCGCCGTTAATGCGGGTGGAGGCCGGGGGNCTCCCGGAGCTTGGTTCGGGGG CGAGGNACCCAGNCGGNNCNNGGNGGCANCGGCGG



consensusID : consensus_5785#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 177
fasta sequence
                              [GAACGAAGAAGAAGAAGACGCGAAGTCNGGGGCGCGGCCATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGCCGCANTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTNCCGGAGCTTNGNTCGNNTNNNGAGNNANCNNNCCGNNGNGNGGNGGTAGCGTTNANNTTGNTC]

[+] EMBL OSR23302A            [GAACGAAGAAGAAGAAGACGCGAAGTCNGGGGCGCGGCCATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGCCGCANTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTNCCGGAGCTTNGNTCGNNTNNNGAGNNANCNNNCCGNNGNGNGGNGGTAGCGTTNANNTTGNTC]


>consensus_5785#2 GAACGAAGAAGAAGAAGACGCGAAGTCNGGGGCGCGGCCATTCTCCGATCCCCAGCTCGC CTTCCAAGCCGCCGCANTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTNCCGGAG CTTNGNTCGNNTNNNGAGNNANCNNNCCGNNGNGNGGNGGTAGCGTTNANNTTGNTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5785#1      TTACGACNNGNCAGNCCTCCTCTTTATNCCANNCGAGGAAGAACCCAAGANCGAAGAAGA 60
consensus_5785#2      ------------------------------------------------GAACGAAGAAGA 12
consensus_5785#0      ------------------------------------------------------AGAAGA 6
                                                                            ******

consensus_5785#1      AGAAGACGCGAANTCNGGGN-GCGGACATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGC 119
consensus_5785#2      AGAAGACGCGAAGTCNGGGGCGCGGCCATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGC 72
consensus_5785#0      AGAAGACGCGAAGTCGNGGGCGCGGCCATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGC 66
                      ************ **  **  **** **********************************

consensus_5785#1      CGCATTCCCCCGCCGTTAATGCGGGTGGAGGCCGGGGGNCTCCCGGAGCTTGGTTCGGG- 178
consensus_5785#2      CGCANTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTNCCGGAGCTTNGNTCGNNT 132
consensus_5785#0      CGCATTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTCCCGGAGCTTGGGTCGGG- 125
                      **** ************ ******************** ** ********* * ***   

consensus_5785#1      GGCGAGGNACCCAGNCGGNNCNNGGNGGCANCGGCGG----------------------- 215
consensus_5785#2      NNNGAGNNANCNNNCCGNNGNGNGGNGGTAGCGTTNANNTTGNTC--------------- 177
consensus_5785#0      GNCGAGGGACCCCGNCGGCGCGCGGCGGCAGCGGCGGCGGCGTCACAGCGGAGGNCGGCG 185
                         ***  * *    **      ** ** * **                           

consensus_5785#1      ------------------------------------------------------------
consensus_5785#2      ------------------------------------------------------------
consensus_5785#0      ATGNCGTCGNCGGGGGCGGCGGCGCACAGCCCCGTCGTCCGCGGTGCAGGGGCTCTTCGA 245
                                                                                  

consensus_5785#1      ------------------------------------------------------------
consensus_5785#2      ------------------------------------------------------------
consensus_5785#0      GGCGTGCCGCGAGGTCTTCGGTGCTCCGCCGGCGCGGTGCCCTCGTCCGCCGGGGTCGAG 305
                                                                                  

consensus_5785#1      ------------------------------------------------------------
consensus_5785#2      ------------------------------------------------------------
consensus_5785#0      AGGATCAAGTCCGTTCTTGATANNATTTAAGCGGANATGTCAAGCTAACTCGAAACATGT 365
                                                                                  

consensus_5785#1      --------------------------------------------------------
consensus_5785#2      --------------------------------------------------------
consensus_5785#0      CATATTTCCGGGGGNTAATTCAATGGAATTCTAAAATAACTAATTANACTTTATGA 421
                                                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)