These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5785#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence [AGAAGAAGAAGACGCGAAGTCGNGGGCGCGGCCATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGCCGCATTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTCCCGGAGCTTGGGTCGGGGNCGAGGGACCCCGNCGGCGCGCGGCGGCAGCGGCGGCGGCGTCACAGCGGAGGNCGGCGATGNCGTCGNCGGGGGCGGCGGCGCACAGCCCCGTCGTCCGCGGTGCAGGGGCTCTTCGAGGCGTGCCGCGAGGTCTTCGGTGCTCCGCCGGCGCGGTGCCCTCGTCCGCCGGGGTCGAGAGGATCAAGTCCGTTCTTGATANNATTTAAGCGGANATGTCAAGCTAACTCGAAACATGTCATATTTCCGGGGGNTAATTCAATGGAATTCTAAAATAACTAATTANACTTTATGA] [+] EMBL AU069374 [AGAAGAAGAAGACGCGAAGTCGNGGGCGCGGCCATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGCCGCATTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTCCCGGAGCTTGGGTCGGGGNCGAGGGACCCCGNCGGCGCGCGGCGGCAGCGGCGGCGGCGTCACAGCGGAGGNCGGCGATGNCGTCGNCGGGGGCGGCGGCGCACAGCCCCGTCGTCCGCGGTGCAGGGGCTCTTCGAGGCGTGCCGCGAGGTCTTCGGTGCTCCGCCGGCGCGGTGCCCTCGTCCGCCGGGGTCGAGAGGATCAAGTCCGTTCTTGATANNATTTAAGCGGANATGTCAAGCTAACTCGAAACATGTCATATTTCCGGGGGNTAATTCAATGGAATTCTAAAATAACTAATTANACTTTATGA] consensusID : consensus_5785#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence [TTACGACNNGNCAGNCCTCCTCTTTATNCCANNCGAGGAAGAACCCAAGANCGAAGAAGAAGAAGACGCGAANTCNGGGNGCGGACATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGCCGCATTCCCCCGCCGTTAATGCGGGTGGAGGCCGGGGGNCTCCCGGAGCTTGGTTCGGGGGCGAGGNACCCAGNCGGNNCNNGGNGGCANCGGCGG] [+] EMBL AU067896 [TTACGACNNGNCAGNCCTCCTCTTTATNCCANNCGAGGAAGAACCCAAGANCGAAGAAGAAGAAGACGCGAANTCNGGGNGCGGACATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGCCGCATTCCCCCGCCGTTAATGCGGGTGGAGGCCGGGGGNCTCCCGGAGCTTGGTTCGGGGGCGAGGNACCCAGNCGGNNCNNGGNGGCANCGGCGG] consensusID : consensus_5785#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 177 fasta sequence [GAACGAAGAAGAAGAAGACGCGAAGTCNGGGGCGCGGCCATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGCCGCANTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTNCCGGAGCTTNGNTCGNNTNNNGAGNNANCNNNCCGNNGNGNGGNGGTAGCGTTNANNTTGNTC] [+] EMBL OSR23302A [GAACGAAGAAGAAGAAGACGCGAAGTCNGGGGCGCGGCCATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGCCGCANTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTNCCGGAGCTTNGNTCGNNTNNNGAGNNANCNNNCCGNNGNGNGGNGGTAGCGTTNANNTTGNTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5785#1 TTACGACNNGNCAGNCCTCCTCTTTATNCCANNCGAGGAAGAACCCAAGANCGAAGAAGA 60 consensus_5785#2 ------------------------------------------------GAACGAAGAAGA 12 consensus_5785#0 ------------------------------------------------------AGAAGA 6 ****** consensus_5785#1 AGAAGACGCGAANTCNGGGN-GCGGACATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGC 119 consensus_5785#2 AGAAGACGCGAAGTCNGGGGCGCGGCCATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGC 72 consensus_5785#0 AGAAGACGCGAAGTCGNGGGCGCGGCCATTCTCCGATCCCCAGCTCGCCTTCCAAGCCGC 66 ************ ** ** **** ********************************** consensus_5785#1 CGCATTCCCCCGCCGTTAATGCGGGTGGAGGCCGGGGGNCTCCCGGAGCTTGGTTCGGG- 178 consensus_5785#2 CGCANTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTNCCGGAGCTTNGNTCGNNT 132 consensus_5785#0 CGCATTCCCCCGCCGTTGATGCGGGTGGAGGCCGGGGGCCTCCCGGAGCTTGGGTCGGG- 125 **** ************ ******************** ** ********* * *** consensus_5785#1 GGCGAGGNACCCAGNCGGNNCNNGGNGGCANCGGCGG----------------------- 215 consensus_5785#2 NNNGAGNNANCNNNCCGNNGNGNGGNGGTAGCGTTNANNTTGNTC--------------- 177 consensus_5785#0 GNCGAGGGACCCCGNCGGCGCGCGGCGGCAGCGGCGGCGGCGTCACAGCGGAGGNCGGCG 185 *** * * ** ** ** * ** consensus_5785#1 ------------------------------------------------------------ consensus_5785#2 ------------------------------------------------------------ consensus_5785#0 ATGNCGTCGNCGGGGGCGGCGGCGCACAGCCCCGTCGTCCGCGGTGCAGGGGCTCTTCGA 245 consensus_5785#1 ------------------------------------------------------------ consensus_5785#2 ------------------------------------------------------------ consensus_5785#0 GGCGTGCCGCGAGGTCTTCGGTGCTCCGCCGGCGCGGTGCCCTCGTCCGCCGGGGTCGAG 305 consensus_5785#1 ------------------------------------------------------------ consensus_5785#2 ------------------------------------------------------------ consensus_5785#0 AGGATCAAGTCCGTTCTTGATANNATTTAAGCGGANATGTCAAGCTAACTCGAAACATGT 365 consensus_5785#1 -------------------------------------------------------- consensus_5785#2 -------------------------------------------------------- consensus_5785#0 CATATTTCCGGGGGNTAATTCAATGGAATTCTAAAATAACTAATTANACTTTATGA 421 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||