cluster # 5787

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5787 cluster # 5787 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5787#0 length = 633 sequences # 2

consensus_5787#1 length = 541 sequences # 1

consensusID : consensus_5787#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 633
fasta sequence

                              [GGCTTCTCCTCCCCCTCCCGGNTCGGTTCGGNTCNGGTCCGGTTCGATTTCGTTTTTTTTTCTTCTTCGTGGGGTTGGTGGGAAAGCATGGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGNCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCANCTTCGGCGAGATCCTCGAGTCCAAGGTCCGATGGATTGATTCCCTCTTCTCTGTGTTTTTTTGGATGTGATTTGGTGGTGGTGTTCTTCAGATCTGGTTGCGTAGATCTGACTATGGGGGTTGTGGTATGCGGTGCAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGAGGCGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCGGCTACGGTGGTGGCGGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGGCGGCGGCTACTGTGGCGGCCGTGGCGGCGGCGGCGGCTACG]

[+] EMBL AU057889             [GGCTTCTCCTCCCCCTCCCGGNTCGGTTCGGNTCNGGTCCGGTTCGATTTCGTTTTTTTTTCTTCTTCGTGGGGTTGGTGGGAAAGCATGGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGNCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCANCTTCGGCGAGATCCTCGAGTCCAAGGTCCGATGGATTGATTCC                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB661824             [           CCCCTCCCGGTTCGGTTCGGTTCGGGTCCGGTTCGATTTCGTTTTTTTTTCTTCTTCGTGGGGTTGGTGGGAAAGCATGGCCGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTTCGGCGAGATCCTCGAGTCCAAGGTCCGATGGATTGATTCCCTCTTCTCTGTGTTTTTTTGGATGTGATTTGGTGGTGGTGTTCTTCAGATCTGGTTGCGTAGATCTGACTATGGGGGTTGTGGTATGCGGTGCAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGAGGCGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCGGCTACGGTGGTGGCGGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGGCGGCGGCTACTGTGGCGGCCGTGGCGGCGGCGGCGGCTACG]




>consensus_5787#0
GGCTTCTCCTCCCCCTCCCGGNTCGGTTCGGNTCNGGTCCGGTTCGATTTCGTTTTTTTT
TCTTCTTCGTGGGGTTGGTGGGAAAGCATGGCGGCGCCGGATGTTGAGTACCGCTGCTTC
GTCGGCGGCCTCGCCTGGNCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCANCTTC
GGCGAGATCCTCGAGTCCAAGGTCCGATGGATTGATTCCCTCTTCTCTGTGTTTTTTTGG
ATGTGATTTGGTGGTGGTGTTCTTCAGATCTGGTTGCGTAGATCTGACTATGGGGGTTGT
GGTATGCGGTGCAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCG
TGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGC
TCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCG
GAGGCGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCGGCTACGGTG
GTGGCGGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGGCGGCGGCT
ACTGTGGCGGCCGTGGCGGCGGCGGCGGCTACG

consensusID : consensus_5787#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence

                              [CCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGAGGCGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCGGCTACGGTGGTGGCGGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGGCGGCGGCTACGGTGGCGGCCGTGGCGGCGGCGGCGGCTACGGCGGTGGCTACGGCAGCCGCGGCGGCGGCAACTCCGACGGGAACTGGAGGAACTGAGCGGTGGGGCCCTCATGGCCAAGTTATCTATCTATCTAATCGAGCTACCATCATCATCATCCGATCGTTATCATCGTTAGTTTTGTGTGGAACTACTATCTAGTTTGTGTTAAAAAAAAAAAAAAAAAAAACCCTGTGCCGAATCGGCACGAG]

[-] EMBL CF326001             [CCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGAGGCGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCGGCTACGGTGGTGGCGGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGGCGGCGGCTACGGTGGCGGCCGTGGCGGCGGCGGCGGCTACGGCGGTGGCTACGGCAGCCGCGGCGGCGGCAACTCCGACGGGAACTGGAGGAACTGAGCGGTGGGGCCCTCATGGCCAAGTTATCTATCTATCTAATCGAGCTACCATCATCATCATCCGATCGTTATCATCGTTAGTTTTGTGTGGAACTACTATCTAGTTTGTGTTAAAAAAAAAAAAAAAAAAAACCCTGTGCCGAATCGGCACGAG]




>consensus_5787#1
CCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGT
GACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCT
CGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGG
AGGCGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCGGCTACGGTGG
TGGCGGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGGCGGCGGCTA
CGGTGGCGGCCGTGGCGGCGGCGGCGGCTACGGCGGTGGCTACGGCAGCCGCGGCGGCGG
CAACTCCGACGGGAACTGGAGGAACTGAGCGGTGGGGCCCTCATGGCCAAGTTATCTATC
TATCTAATCGAGCTACCATCATCATCATCCGATCGTTATCATCGTTAGTTTTGTGTGGAA
CTACTATCTAGTTTGTGTTAAAAAAAAAAAAAAAAAAAACCCTGTGCCGAATCGGCACGA
G

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5787#0      GGCTTCTCCTCCCCCTCCCGGNTCGGTTCGGNTCNGGTCCGGTTCGATTTCGTTTTTTTT 60
consensus_5787#1      ------------------------------------------------------------
                                                                                  

consensus_5787#0      TCTTCTTCGTGGGGTTGGTGGGAAAGCATGGCGGCGCCGGATGTTGAGTACCGCTGCTTC 120
consensus_5787#1      ------------------------------------------------------------
                                                                                  

consensus_5787#0      GTCGGCGGCCTCGCCTGGNCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCANCTTC 180
consensus_5787#1      ------------------------------------------------------------
                                                                                  

consensus_5787#0      GGCGAGATCCTCGAGTCCAAGGTCCGATGGATTGATTCCCTCTTCTCTGTGTTTTTTTGG 240
consensus_5787#1      ------------------------------------------------------------
                                                                                  

consensus_5787#0      ATGTGATTTGGTGGTGGTGTTCTTCAGATCTGGTTGCGTAGATCTGACTATGGGGGTTGT 300
consensus_5787#1      ------------------------------------------------------------
                                                                                  

consensus_5787#0      GGTATGCGGTGCAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCG 360
consensus_5787#1      -CCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCG 59
                           * *    ************************************************

consensus_5787#0      TGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGC 420
consensus_5787#1      TGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGC 119
                      ************************************************************

consensus_5787#0      TCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCG 480
consensus_5787#1      TCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCG 179
                      ************************************************************

consensus_5787#0      GAGGCGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCGGCTACGGTG 540
consensus_5787#1      GAGGCGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCGGCTACGGTG 239
                      ************************************************************

consensus_5787#0      GTGGCGGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGGCGGCGGCT 600
consensus_5787#1      GTGGCGGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGGCGGCGGCT 299
                      ************************************************************

consensus_5787#0      ACTGTGGCGGCCGTGGCGGCGGCGGCGGCTACG--------------------------- 633
consensus_5787#1      ACGGTGGCGGCCGTGGCGGCGGCGGCGGCTACGGCGGTGGCTACGGCAGCCGCGGCGGCG 359
                      ** ******************************                           

consensus_5787#0      ------------------------------------------------------------
consensus_5787#1      GCAACTCCGACGGGAACTGGAGGAACTGAGCGGTGGGGCCCTCATGGCCAAGTTATCTAT 419
                                                                                  

consensus_5787#0      ------------------------------------------------------------
consensus_5787#1      CTATCTAATCGAGCTACCATCATCATCATCCGATCGTTATCATCGTTAGTTTTGTGTGGA 479
                                                                                  

consensus_5787#0      ------------------------------------------------------------
consensus_5787#1      ACTACTATCTAGTTTGTGTTAAAAAAAAAAAAAAAAAAAACCCTGTGCCGAATCGGCACG 539
                                                                                  

consensus_5787#0      --
consensus_5787#1      AG 541