These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5792#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1368 fasta sequence [ACACACATGCCCGTCCTGCCATGGCTCGCGGCGGCGGCGACGACGCCCGTGCGCCGGTCGCCGCCGCTCCCCGCTACTCCGCGTGCCCTGCTCCGACTGCCGGCCTCTTCCTTCCCTCCCTGGAGCAACTGCGCGAAGAGCGGGCTCCCGCCGCGGGGGCCATTCGCCACCGCCGCTGACACCCCCCTCGGGGGTTCGCTCCCTGAGCCCGAGGAGGAGCGCGACACGCTCCTCGACGGCGCGCTCCGGGCCGCACGATTCCGCGACGAGGAGTCCCGCCGCCCAGATCCTCTTTTTATTGACCCATATGCAGCTGTTCTACTTTCACTTGATGTGGCAAGTGAAGATAAAGATCTTCTAGCTTTACATTTAATGCCAAGTGCAGAACATTATAGGCTAGTGACCAGATATATTGATGACAAATTGCAACATTTCATAAGCAATTCAGATGATCTTAGACAGATTGTTCTGTTGACAGATGGAATGGACACTCGTCCTTACAGGCTAAGCTGGCCAAGGTTGTCTGTTGTGTATGATGTATCACCTAGAAGAGTCTTCATTACTGCATCACAGCAACTCAGAGGAGCCGGAGCAAAAATATCACGGAACTGTGTTGTACTTCATACTTCTTCAGAGTCTCCTGACTTGCAAGCGGGCTTGAATAAAAATGGCTTCAATGGGAATAGGCCGAGCTTGTGGGTACTGCAGGGTTTACCTTTGTTCACTTTTAAAAGCTTGGAGGACCTTTTGCTTGTCATTGGCAATTTAGCAATGAAAGGGAGTATCTTTATAGGGGAGGTGCCACGTTTTACGCAGTGGGGAGCAGCAACAGACATGGCCTCAGAGCAAGACAGGCTGGAAAACCTTTCCTTTACTCAGGGTTTTCGTGTCAGCTTTGTTCACTATGAAGAAGTGGCAAAGGATGTTGGCTTAGGTCTAGACTCTCCACCGGAAATACATGGTAGAGCTATTTTTATTGCAGAACAGCTGCGTTTCTCAGATGCTCAGATGGAGAGCTTCCGGATGCATTTTGAAAGAATAGAGGATGATGCCGATGAAGACGGATTCGAGGAACTTTAGTCCAATCTATGATGCTTGATGGCTCTTGAAAAATGATGCTCGATGTACTTGAAACTTGAGAATGTTTTTGACTTGTGTGGGATTGGGAATATACCCTGGAAAGAGAGAGCCTGTAAATGTATGCATTAGATTGTATTCTTCAAAACAGATGTATGCATTAGATTCTTGCGAGCAGAAAGTTTCCGTATGGAAACATGTAATAATCGGCATGTTTTTCTGTCACCATTTATATGGCTATATGTTTACTGGGATGTCTCAGATATCTGTGATTGCCACATATTTATGAAT] [+] EMBL AK068864 [ACACACATGCCCGTCCTGCCATGGCTCGCGGCGGCGGCGACGACGCCCGTGCGCCGGTCGCCGCCGCTCCCCGCTACTCCGCGTGCCCTGCTCCGACTGCCGGCCTCTTCCTTCCCTCCCTGGAGCAACTGCGCGAAGAGCGGGCTCCCGCCGCGGGGGCCATTCGCCACCGCCGCTGACACCCCCCTCGGGGGTTCGCTCCCTGAGCCCGAGGAGGAGCGCGACACGCTCCTCGACGGCGCGCTCCGGGCCGCACGATTCCGCGACGAGGAGTCCCGCCGCCCAGATCCTCTTTTTATTGACCCATATGCAGCTGTTCTACTTTCACTTGATGTGGCAAGTGAAGATAAAGATCTTCTAGCTTTACATTTAATGCCAAGTGCAGAACATTATAGGCTAGTGACCAGATATATTGATGACAAATTGCAACATTTCATAAGCAATTCAGATGATCTTAGACAGATTGTTCTGTTGACAGATGGAATGGACACTCGTCCTTACAGGCTAAGCTGGCCAAGGTTGTCTGTTGTGTATGATGTATCACCTAGAAGAGTCTTCATTACTGCATCACAGCAACTCAGAGGAGCCGGAGCAAAAATATCACGGAACTGTGTTGTACTTCATACTTCTTCAGAGTCTCCTGACTTGCAAGCGGGCTTGAATAAAAATGGCTTCAATGGGAATAGGCCGAGCTTGTGGGTACTGCAGGGTTTACCTTTGTTCACTTTTAAAAGCTTGGAGGACCTTTTGCTTGTCATTGGCAATTTAGCAATGAAAGGGAGTATCTTTATAGGGGAGGTGCCACGTTTTACGCAGTGGGGAGCAGCAACAGACATGGCCTCAGAGCAAGACAGGCTGGAAAACCTTTCCTTTACTCAGGGTTTTCGTGTCAGCTTTGTTCACTATGAAGAAGTGGCAAAGGATGTTGGCTTAGGTCTAGACTCTCCACCGGAAATACATGGTAGAGCTATTTTTATTGCAGAACAGCTGCGTTTCTCAGATGCTCAGATGGAGAGCTTCCGGATGCATTTTGAAAGAATAGAGGATGATGCCGATGAAGACGGATTCGAGGAACTTTAGTCCAATCTATGATGCTTGATGGCTCTTGAAAAATGATGCTCGATGTACTTGAAACTTGAGAATGTTTTTGACTTGTGTGGGATTGGGAATATACCCTGGAAAGAGAGAGCCTGTAAATGTATGCATTAGATTGTATTCTTCAAAACAGATGTATGCATTAGATTCTTGCGAGCAGAAAGTTTCCGTATGGAAACATGTAATAATCGGCATGTTTTTCTGTCACCATTTATATGGCTATATGTTTACTGGGATGTCTCAGATATCTGTGATTGCCACATATTTATGAAT] consensusID : consensus_5792#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence [AGAGTCTCCTGACTTGCAAGCGGGCTTGAATAAAAATGGCTTCAATGGGAATAGGCCGAGCTTGTGGGTACTGCAGGGTTTACCTTTGTTCACTTTTAAAAGCTTGGAGGACCTTTTGCTTGTCATTGGCAATTTAGCAATGAAAGGGAGTATCTTTATAGGGGAGGTGCCACGTTTTACGCAGTGGGGAGCATCAGCAGACATGGCCTCAGAGCAAGACAGGCTGGAAAACCTTTTCTTTACTCAGGGTTTTCGTGTCAGCTTTGTTCACTATGAAGAAGTGGCAAAGGATGTTGGCTTAGGTCTAGACTCTCCACCGGAAATACATGGTAGAGCTCTTTTTATTGCAGAACAGCTGCGTTTCTCAGATGCTCAGGTAATGAAACCAACTCTATTCCTTCGACATGGATTCTAACTTCAATGATTCTGGGGGTTGGCGTGAGCTCTAAANAATATCACTCTCACATCTGGAAATTGCCCATAACCTTTTGAT] [+] EMBL CF197062 [AGAGTCTCCTGACTTGCAAGCGGGCTTGAATAAAAATGGCTTCAATGGGAATAGGCCGAGCTTGTGGGTACTGCAGGGTTTACCTTTGTTCACTTTTAAAAGCTTGGAGGACCTTTTGCTTGTCATTGGCAATTTAGCAATGAAAGGGAGTATCTTTATAGGGGAGGTGCCACGTTTTACGCAGTGGGGAGCATCAGCAGACATGGCCTCAGAGCAAGACAGGCTGGAAAACCTTTTCTTTACTCAGGGTTTTCGTGTCAGCTTTGTTCACTATGAAGAAGTGGCAAAGGATGTTGGCTTAGGTCTAGACTCTCCACCGGAAATACATGGTAGAGCTCTTTTTATTGCAGAACAGCTGCGTTTCTCAGATGCTCAGGTAATGAAACCAACTCTATTCCTTCGACATGGATTCTAACTTCAATGATTCTGGGGGTTGGCGTGAGCTCTAAANAATATCACTCTCACATCTGGAAATTGCCCATAACCTTTTGAT] consensusID : consensus_5792#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence [CCGGATGCATTTTGAAAGAATAGAGGATGATGCCGATGAAGACGGATTCGAGGAACTTTAGTCCAATCTATGATGCTTGATGGCTCTTGAAAAATGATGCTCGATGTACTTGAAACTTGAGAATGTTTTTGACTTGTGTGGGATTGGGAATATACCCCTGGAAAGAGAGAGCCTGTAAATGTATGCATTAGATTGTATTCTTCAAAACAGATGTATGCATTAGATTCTTGCGAGCAGAAAGTTTCCGTATGGAAACATGTAATAATCGGCATGTTTTTCTGTCACCATTTATATGGCTATATGTTTACTGGGATGTCTCAGATATCTGTGATTGCCACCAAAAAAAAAA] [+] EMBL BI806483 [CCGGATGCATTTTGAAAGAATAGAGGATGATGCCGATGAAGACGGATTCGAGGAACTTTAGTCCAATCTATGATGCTTGATGGCTCTTGAAAAATGATGCTCGATGTACTTGAAACTTGAGAATGTTTTTGACTTGTGTGGGATTGGGAATATACCCCTGGAAAGAGAGAGCCTGTAAATGTATGCATTAGATTGTATTCTTCAAAACAGATGTATGCATTAGATTCTTGCGAGCAGAAAGTTTCCGTATGGAAACATGTAATAATCGGCATGTTTTTCTGTCACCATTTATATGGCTATATGTTTACTGGGATGTCTCAGATATCTGTGATTGCCACCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5792#0 ACACACATGCCCGTCCTGCCATGGCTCGCGGCGGCGGCGACGACGCCCGTGCGCCGGTCG 60 consensus_5792#2 ------------------------------------------------------------ consensus_5792#1 ------------------------------------------------------------ consensus_5792#0 CCGCCGCTCCCCGCTACTCCGCGTGCCCTGCTCCGACTGCCGGCCTCTTCCTTCCCTCCC 120 consensus_5792#2 ------------------------------------------------------------ consensus_5792#1 ------------------------------------------------------------ consensus_5792#0 TGGAGCAACTGCGCGAAGAGCGGGCTCCCGCCGCGGGGGCCATTCGCCACCGCCGCTGAC 180 consensus_5792#2 ------------------------------------------------------------ consensus_5792#1 ------------------------------------------------------------ consensus_5792#0 ACCCCCCTCGGGGGTTCGCTCCCTGAGCCCGAGGAGGAGCGCGACACGCTCCTCGACGGC 240 consensus_5792#2 ------------------------------------------------------------ consensus_5792#1 ------------------------------------------------------------ consensus_5792#0 GCGCTCCGGGCCGCACGATTCCGCGACGAGGAGTCCCGCCGCCCAGATCCTCTTTTTATT 300 consensus_5792#2 ------------------------------------------------------------ consensus_5792#1 ------------------------------------------------------------ consensus_5792#0 GACCCATATGCAGCTGTTCTACTTTCACTTGATGTGGCAAGTGAAGATAAAGATCTTCTA 360 consensus_5792#2 ------------------------------------------------------------ consensus_5792#1 ------------------------------------------------------------ consensus_5792#0 GCTTTACATTTAATGCCAAGTGCAGAACATTATAGGCTAGTGACCAGATATATTGATGAC 420 consensus_5792#2 ------------------------------------------------------------ consensus_5792#1 ------------------------------------------------------------ consensus_5792#0 AAATTGCAACATTTCATAAGCAATTCAGATGATCTTAGACAGATTGTTCTGTTGACAGAT 480 consensus_5792#2 ------------------------------------------------------------ consensus_5792#1 ------------------------------------------------------------ consensus_5792#0 GGAATGGACACTCGTCCTTACAGGCTAAGCTGGCCAAGGTTGTCTGTTGTGTATGATGTA 540 consensus_5792#2 ------------------------------------------------------------ consensus_5792#1 ------------------------------------------------------------ consensus_5792#0 TCACCTAGAAGAGTCTTCATTACTGCATCACAGCAACTCAGAGGAGCCGGAGCAAAAATA 600 consensus_5792#2 ------------------------------------------------------------ consensus_5792#1 ------------------------------------------------------------ consensus_5792#0 TCACGGAACTGTGTTGTACTTCATACTTCTTCAGAGTCTCCTGACTTGCAAGCGGGCTTG 660 consensus_5792#2 ------------------------------------------------------------ consensus_5792#1 ------------------------------------------------------------ consensus_5792#0 AATAAAAATGGCTTCAATGGGAATAGGCCGAGCTTGTGGGTACTGCAGGGTTTACCTTTG 720 consensus_5792#2 ------------------------------------------------------------ consensus_5792#1 ------------------------------------------------------------ consensus_5792#0 TTCACTTTTAAAAGCTTGGAGGACCTTTTGCTTGTCATTGGCAATTTAGCAATGAAAGGG 780 consensus_5792#2 ------------------------------------------------------------ consensus_5792#1 ------------------------------------------------------------ consensus_5792#0 AGTATCTTTATAGGGGAGGTGCCACGTTTTACGCAGTGGGGAGCAGCAACAGACATGGCC 840 consensus_5792#2 ------------------------------------------------------------ consensus_5792#1 ------------------------------------------------------------ consensus_5792#0 TCAGAGCAAGACAGGCTGGAAAACCTTTCCTTTACTCAGGGTTTTCGTGTCAGCTTTGTT 900 consensus_5792#2 ------------------------------------------------------------ consensus_5792#1 ------------------------------------------------------------ consensus_5792#0 CACTATGAAGAAGTGGCAAAGGATGTTGGCTTAGGTCTAGACTCTCCACCGGAAATACAT 960 consensus_5792#2 ------------------------------------------------------------ consensus_5792#1 ------------------------------------AGAGTCTCCTGACTTGCAAGCGGG 24 consensus_5792#0 GGTAGAGCTATTTTTATTGCAGAACAGCTGCGTTTCTCAGATGCTCAGATGGAGAGCTTC 1020 consensus_5792#2 -----------------------------------------------------------C 1 consensus_5792#1 CTTGAATAAAAATGGCTTCAATGGGAATAGGCCGAGCTTGTGGGTACTGCAGGGTTTACC 84 * consensus_5792#0 CGGATGCA-TTTTGAAAGAATAGAGGAT------------GATGCCGATGAAG--ACGGA 1065 consensus_5792#2 CGGATGCA-TTTTGAAAGAATAGAGGAT------------GATGCCGATGAAG--ACGGA 46 consensus_5792#1 TTTGTTCACTTTTAAAAGCTTGGAGGACCTTTTGCTTGTCATTGGCAATTTAGCAATGAA 144 * ** **** **** * ***** ** * ** ** * * * consensus_5792#0 TTCGAGGAACTTTA--------GTCCAATCTATGATGCTTGATGGCTCTTGAAAAATGAT 1117 consensus_5792#2 TTCGAGGAACTTTA--------GTCCAATCTATGATGCTTGATGGCTCTTGAAAAATGAT 98 consensus_5792#1 AGGGAGTATCTTTATAGGGGAGGTGCCACGTTTTACGCAGTGGGGAGCATCAGCAGACAT 204 *** * ***** ** * * * * * ** ** * * * * ** consensus_5792#0 G--CTCGATGTACTTGAAACTTGAGAATGTTTTTGACTTGTGTGGGATTGGGAATA---- 1171 consensus_5792#2 G--CTCGATGTACTTGAAACTTGAGAATGTTTTTGACTTGTGTGGGATTGGGAATA---- 152 consensus_5792#1 GGCCTCAGAGCAAGACAGGCTGGAAAACCTTTTCTTTACTCAGGGTTTTCGTGTCAGCTT 264 * *** * * * ** ** ** **** ** ** * * consensus_5792#0 TACCC-TGGAAAGAGAGAGCCTGTAAATGTATGCATTAGATTGTATTCTTCAAAACAGAT 1230 consensus_5792#2 TACCCCTGGAAAGAGAGAGCCTGTAAATGTATGCATTAGATTGTATTCTTCAAAACAGAT 212 consensus_5792#1 TGTTCACTATGAAGAAGTGGCAAAGGATGTTGGCTTAGGTCTAGACTCTCCACCGGAAAT 324 * * * ** * * **** ** * * * * *** ** * ** consensus_5792#0 GTATGCATTAGATTCTTGCGA-GCAGAAAGTTTCCGTATGGAAA-----CATGTAAT--A 1282 consensus_5792#2 GTATGCATTAGATTCTTGCGA-GCAGAAAGTTTCCGTATGGAAA-----CATGTAAT--A 264 consensus_5792#1 ACATGGTAGAGCTCTTTTTATTGCAGAACAGCTGCGTTTCTCAGATGCTCAGGTAATGAA 384 *** ** * ** ****** * *** * * ** ***** * consensus_5792#0 ATCGGCA-TGTTTTTCTGTCACCATTTATATGGCTATATGTTTACTGGGATGTCTCAGAT 1341 consensus_5792#2 ATCGGCA-TGTTTTTCTGTCACCATTTATATGGCTATATGTTTACTGGGATGTCTCAGAT 323 consensus_5792#1 ACCAACTCTATTCCTTCGACATGGATTCTAACTTCAATGATTCTGGGGGTTGGCGTGAGC 444 * * * * ** * * ** ** ** * ** *** ** * consensus_5792#0 ATCTGTGATTGCCAC---ATATTTATGAAT------------------- 1368 consensus_5792#2 ATCTGTGATTGCCAC---CAAAAAAAAAA-------------------- 349 consensus_5792#1 TCTAAANAATATCACTCTCACATCTGGAAATTGCCCATAACCTTTTGAT 493 * * *** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||