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Oryza sativa
cluster # 5792 cluster # 5792       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5792#0 length = 1368 sequences # 1  
consensus_5792#1 length = 493 sequences # 1  
consensus_5792#2 length = 349 sequences # 1  

consensusID : consensus_5792#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1368
fasta sequence
                              [ACACACATGCCCGTCCTGCCATGGCTCGCGGCGGCGGCGACGACGCCCGTGCGCCGGTCGCCGCCGCTCCCCGCTACTCCGCGTGCCCTGCTCCGACTGCCGGCCTCTTCCTTCCCTCCCTGGAGCAACTGCGCGAAGAGCGGGCTCCCGCCGCGGGGGCCATTCGCCACCGCCGCTGACACCCCCCTCGGGGGTTCGCTCCCTGAGCCCGAGGAGGAGCGCGACACGCTCCTCGACGGCGCGCTCCGGGCCGCACGATTCCGCGACGAGGAGTCCCGCCGCCCAGATCCTCTTTTTATTGACCCATATGCAGCTGTTCTACTTTCACTTGATGTGGCAAGTGAAGATAAAGATCTTCTAGCTTTACATTTAATGCCAAGTGCAGAACATTATAGGCTAGTGACCAGATATATTGATGACAAATTGCAACATTTCATAAGCAATTCAGATGATCTTAGACAGATTGTTCTGTTGACAGATGGAATGGACACTCGTCCTTACAGGCTAAGCTGGCCAAGGTTGTCTGTTGTGTATGATGTATCACCTAGAAGAGTCTTCATTACTGCATCACAGCAACTCAGAGGAGCCGGAGCAAAAATATCACGGAACTGTGTTGTACTTCATACTTCTTCAGAGTCTCCTGACTTGCAAGCGGGCTTGAATAAAAATGGCTTCAATGGGAATAGGCCGAGCTTGTGGGTACTGCAGGGTTTACCTTTGTTCACTTTTAAAAGCTTGGAGGACCTTTTGCTTGTCATTGGCAATTTAGCAATGAAAGGGAGTATCTTTATAGGGGAGGTGCCACGTTTTACGCAGTGGGGAGCAGCAACAGACATGGCCTCAGAGCAAGACAGGCTGGAAAACCTTTCCTTTACTCAGGGTTTTCGTGTCAGCTTTGTTCACTATGAAGAAGTGGCAAAGGATGTTGGCTTAGGTCTAGACTCTCCACCGGAAATACATGGTAGAGCTATTTTTATTGCAGAACAGCTGCGTTTCTCAGATGCTCAGATGGAGAGCTTCCGGATGCATTTTGAAAGAATAGAGGATGATGCCGATGAAGACGGATTCGAGGAACTTTAGTCCAATCTATGATGCTTGATGGCTCTTGAAAAATGATGCTCGATGTACTTGAAACTTGAGAATGTTTTTGACTTGTGTGGGATTGGGAATATACCCTGGAAAGAGAGAGCCTGTAAATGTATGCATTAGATTGTATTCTTCAAAACAGATGTATGCATTAGATTCTTGCGAGCAGAAAGTTTCCGTATGGAAACATGTAATAATCGGCATGTTTTTCTGTCACCATTTATATGGCTATATGTTTACTGGGATGTCTCAGATATCTGTGATTGCCACATATTTATGAAT]

[+] EMBL AK068864             [ACACACATGCCCGTCCTGCCATGGCTCGCGGCGGCGGCGACGACGCCCGTGCGCCGGTCGCCGCCGCTCCCCGCTACTCCGCGTGCCCTGCTCCGACTGCCGGCCTCTTCCTTCCCTCCCTGGAGCAACTGCGCGAAGAGCGGGCTCCCGCCGCGGGGGCCATTCGCCACCGCCGCTGACACCCCCCTCGGGGGTTCGCTCCCTGAGCCCGAGGAGGAGCGCGACACGCTCCTCGACGGCGCGCTCCGGGCCGCACGATTCCGCGACGAGGAGTCCCGCCGCCCAGATCCTCTTTTTATTGACCCATATGCAGCTGTTCTACTTTCACTTGATGTGGCAAGTGAAGATAAAGATCTTCTAGCTTTACATTTAATGCCAAGTGCAGAACATTATAGGCTAGTGACCAGATATATTGATGACAAATTGCAACATTTCATAAGCAATTCAGATGATCTTAGACAGATTGTTCTGTTGACAGATGGAATGGACACTCGTCCTTACAGGCTAAGCTGGCCAAGGTTGTCTGTTGTGTATGATGTATCACCTAGAAGAGTCTTCATTACTGCATCACAGCAACTCAGAGGAGCCGGAGCAAAAATATCACGGAACTGTGTTGTACTTCATACTTCTTCAGAGTCTCCTGACTTGCAAGCGGGCTTGAATAAAAATGGCTTCAATGGGAATAGGCCGAGCTTGTGGGTACTGCAGGGTTTACCTTTGTTCACTTTTAAAAGCTTGGAGGACCTTTTGCTTGTCATTGGCAATTTAGCAATGAAAGGGAGTATCTTTATAGGGGAGGTGCCACGTTTTACGCAGTGGGGAGCAGCAACAGACATGGCCTCAGAGCAAGACAGGCTGGAAAACCTTTCCTTTACTCAGGGTTTTCGTGTCAGCTTTGTTCACTATGAAGAAGTGGCAAAGGATGTTGGCTTAGGTCTAGACTCTCCACCGGAAATACATGGTAGAGCTATTTTTATTGCAGAACAGCTGCGTTTCTCAGATGCTCAGATGGAGAGCTTCCGGATGCATTTTGAAAGAATAGAGGATGATGCCGATGAAGACGGATTCGAGGAACTTTAGTCCAATCTATGATGCTTGATGGCTCTTGAAAAATGATGCTCGATGTACTTGAAACTTGAGAATGTTTTTGACTTGTGTGGGATTGGGAATATACCCTGGAAAGAGAGAGCCTGTAAATGTATGCATTAGATTGTATTCTTCAAAACAGATGTATGCATTAGATTCTTGCGAGCAGAAAGTTTCCGTATGGAAACATGTAATAATCGGCATGTTTTTCTGTCACCATTTATATGGCTATATGTTTACTGGGATGTCTCAGATATCTGTGATTGCCACATATTTATGAAT]


>consensus_5792#0 ACACACATGCCCGTCCTGCCATGGCTCGCGGCGGCGGCGACGACGCCCGTGCGCCGGTCG CCGCCGCTCCCCGCTACTCCGCGTGCCCTGCTCCGACTGCCGGCCTCTTCCTTCCCTCCC TGGAGCAACTGCGCGAAGAGCGGGCTCCCGCCGCGGGGGCCATTCGCCACCGCCGCTGAC ACCCCCCTCGGGGGTTCGCTCCCTGAGCCCGAGGAGGAGCGCGACACGCTCCTCGACGGC GCGCTCCGGGCCGCACGATTCCGCGACGAGGAGTCCCGCCGCCCAGATCCTCTTTTTATT GACCCATATGCAGCTGTTCTACTTTCACTTGATGTGGCAAGTGAAGATAAAGATCTTCTA GCTTTACATTTAATGCCAAGTGCAGAACATTATAGGCTAGTGACCAGATATATTGATGAC AAATTGCAACATTTCATAAGCAATTCAGATGATCTTAGACAGATTGTTCTGTTGACAGAT GGAATGGACACTCGTCCTTACAGGCTAAGCTGGCCAAGGTTGTCTGTTGTGTATGATGTA TCACCTAGAAGAGTCTTCATTACTGCATCACAGCAACTCAGAGGAGCCGGAGCAAAAATA TCACGGAACTGTGTTGTACTTCATACTTCTTCAGAGTCTCCTGACTTGCAAGCGGGCTTG AATAAAAATGGCTTCAATGGGAATAGGCCGAGCTTGTGGGTACTGCAGGGTTTACCTTTG TTCACTTTTAAAAGCTTGGAGGACCTTTTGCTTGTCATTGGCAATTTAGCAATGAAAGGG AGTATCTTTATAGGGGAGGTGCCACGTTTTACGCAGTGGGGAGCAGCAACAGACATGGCC TCAGAGCAAGACAGGCTGGAAAACCTTTCCTTTACTCAGGGTTTTCGTGTCAGCTTTGTT CACTATGAAGAAGTGGCAAAGGATGTTGGCTTAGGTCTAGACTCTCCACCGGAAATACAT GGTAGAGCTATTTTTATTGCAGAACAGCTGCGTTTCTCAGATGCTCAGATGGAGAGCTTC CGGATGCATTTTGAAAGAATAGAGGATGATGCCGATGAAGACGGATTCGAGGAACTTTAG TCCAATCTATGATGCTTGATGGCTCTTGAAAAATGATGCTCGATGTACTTGAAACTTGAG AATGTTTTTGACTTGTGTGGGATTGGGAATATACCCTGGAAAGAGAGAGCCTGTAAATGT ATGCATTAGATTGTATTCTTCAAAACAGATGTATGCATTAGATTCTTGCGAGCAGAAAGT TTCCGTATGGAAACATGTAATAATCGGCATGTTTTTCTGTCACCATTTATATGGCTATAT GTTTACTGGGATGTCTCAGATATCTGTGATTGCCACATATTTATGAAT



consensusID : consensus_5792#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 493
fasta sequence
                              [AGAGTCTCCTGACTTGCAAGCGGGCTTGAATAAAAATGGCTTCAATGGGAATAGGCCGAGCTTGTGGGTACTGCAGGGTTTACCTTTGTTCACTTTTAAAAGCTTGGAGGACCTTTTGCTTGTCATTGGCAATTTAGCAATGAAAGGGAGTATCTTTATAGGGGAGGTGCCACGTTTTACGCAGTGGGGAGCATCAGCAGACATGGCCTCAGAGCAAGACAGGCTGGAAAACCTTTTCTTTACTCAGGGTTTTCGTGTCAGCTTTGTTCACTATGAAGAAGTGGCAAAGGATGTTGGCTTAGGTCTAGACTCTCCACCGGAAATACATGGTAGAGCTCTTTTTATTGCAGAACAGCTGCGTTTCTCAGATGCTCAGGTAATGAAACCAACTCTATTCCTTCGACATGGATTCTAACTTCAATGATTCTGGGGGTTGGCGTGAGCTCTAAANAATATCACTCTCACATCTGGAAATTGCCCATAACCTTTTGAT]

[+] EMBL CF197062             [AGAGTCTCCTGACTTGCAAGCGGGCTTGAATAAAAATGGCTTCAATGGGAATAGGCCGAGCTTGTGGGTACTGCAGGGTTTACCTTTGTTCACTTTTAAAAGCTTGGAGGACCTTTTGCTTGTCATTGGCAATTTAGCAATGAAAGGGAGTATCTTTATAGGGGAGGTGCCACGTTTTACGCAGTGGGGAGCATCAGCAGACATGGCCTCAGAGCAAGACAGGCTGGAAAACCTTTTCTTTACTCAGGGTTTTCGTGTCAGCTTTGTTCACTATGAAGAAGTGGCAAAGGATGTTGGCTTAGGTCTAGACTCTCCACCGGAAATACATGGTAGAGCTCTTTTTATTGCAGAACAGCTGCGTTTCTCAGATGCTCAGGTAATGAAACCAACTCTATTCCTTCGACATGGATTCTAACTTCAATGATTCTGGGGGTTGGCGTGAGCTCTAAANAATATCACTCTCACATCTGGAAATTGCCCATAACCTTTTGAT]


>consensus_5792#1 AGAGTCTCCTGACTTGCAAGCGGGCTTGAATAAAAATGGCTTCAATGGGAATAGGCCGAG CTTGTGGGTACTGCAGGGTTTACCTTTGTTCACTTTTAAAAGCTTGGAGGACCTTTTGCT TGTCATTGGCAATTTAGCAATGAAAGGGAGTATCTTTATAGGGGAGGTGCCACGTTTTAC GCAGTGGGGAGCATCAGCAGACATGGCCTCAGAGCAAGACAGGCTGGAAAACCTTTTCTT TACTCAGGGTTTTCGTGTCAGCTTTGTTCACTATGAAGAAGTGGCAAAGGATGTTGGCTT AGGTCTAGACTCTCCACCGGAAATACATGGTAGAGCTCTTTTTATTGCAGAACAGCTGCG TTTCTCAGATGCTCAGGTAATGAAACCAACTCTATTCCTTCGACATGGATTCTAACTTCA ATGATTCTGGGGGTTGGCGTGAGCTCTAAANAATATCACTCTCACATCTGGAAATTGCCC ATAACCTTTTGAT



consensusID : consensus_5792#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence
                              [CCGGATGCATTTTGAAAGAATAGAGGATGATGCCGATGAAGACGGATTCGAGGAACTTTAGTCCAATCTATGATGCTTGATGGCTCTTGAAAAATGATGCTCGATGTACTTGAAACTTGAGAATGTTTTTGACTTGTGTGGGATTGGGAATATACCCCTGGAAAGAGAGAGCCTGTAAATGTATGCATTAGATTGTATTCTTCAAAACAGATGTATGCATTAGATTCTTGCGAGCAGAAAGTTTCCGTATGGAAACATGTAATAATCGGCATGTTTTTCTGTCACCATTTATATGGCTATATGTTTACTGGGATGTCTCAGATATCTGTGATTGCCACCAAAAAAAAAA]

[+] EMBL BI806483             [CCGGATGCATTTTGAAAGAATAGAGGATGATGCCGATGAAGACGGATTCGAGGAACTTTAGTCCAATCTATGATGCTTGATGGCTCTTGAAAAATGATGCTCGATGTACTTGAAACTTGAGAATGTTTTTGACTTGTGTGGGATTGGGAATATACCCCTGGAAAGAGAGAGCCTGTAAATGTATGCATTAGATTGTATTCTTCAAAACAGATGTATGCATTAGATTCTTGCGAGCAGAAAGTTTCCGTATGGAAACATGTAATAATCGGCATGTTTTTCTGTCACCATTTATATGGCTATATGTTTACTGGGATGTCTCAGATATCTGTGATTGCCACCAAAAAAAAAA]


>consensus_5792#2 CCGGATGCATTTTGAAAGAATAGAGGATGATGCCGATGAAGACGGATTCGAGGAACTTTA GTCCAATCTATGATGCTTGATGGCTCTTGAAAAATGATGCTCGATGTACTTGAAACTTGA GAATGTTTTTGACTTGTGTGGGATTGGGAATATACCCCTGGAAAGAGAGAGCCTGTAAAT GTATGCATTAGATTGTATTCTTCAAAACAGATGTATGCATTAGATTCTTGCGAGCAGAAA GTTTCCGTATGGAAACATGTAATAATCGGCATGTTTTTCTGTCACCATTTATATGGCTAT ATGTTTACTGGGATGTCTCAGATATCTGTGATTGCCACCAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5792#0      ACACACATGCCCGTCCTGCCATGGCTCGCGGCGGCGGCGACGACGCCCGTGCGCCGGTCG 60
consensus_5792#2      ------------------------------------------------------------
consensus_5792#1      ------------------------------------------------------------
                                                                                  

consensus_5792#0      CCGCCGCTCCCCGCTACTCCGCGTGCCCTGCTCCGACTGCCGGCCTCTTCCTTCCCTCCC 120
consensus_5792#2      ------------------------------------------------------------
consensus_5792#1      ------------------------------------------------------------
                                                                                  

consensus_5792#0      TGGAGCAACTGCGCGAAGAGCGGGCTCCCGCCGCGGGGGCCATTCGCCACCGCCGCTGAC 180
consensus_5792#2      ------------------------------------------------------------
consensus_5792#1      ------------------------------------------------------------
                                                                                  

consensus_5792#0      ACCCCCCTCGGGGGTTCGCTCCCTGAGCCCGAGGAGGAGCGCGACACGCTCCTCGACGGC 240
consensus_5792#2      ------------------------------------------------------------
consensus_5792#1      ------------------------------------------------------------
                                                                                  

consensus_5792#0      GCGCTCCGGGCCGCACGATTCCGCGACGAGGAGTCCCGCCGCCCAGATCCTCTTTTTATT 300
consensus_5792#2      ------------------------------------------------------------
consensus_5792#1      ------------------------------------------------------------
                                                                                  

consensus_5792#0      GACCCATATGCAGCTGTTCTACTTTCACTTGATGTGGCAAGTGAAGATAAAGATCTTCTA 360
consensus_5792#2      ------------------------------------------------------------
consensus_5792#1      ------------------------------------------------------------
                                                                                  

consensus_5792#0      GCTTTACATTTAATGCCAAGTGCAGAACATTATAGGCTAGTGACCAGATATATTGATGAC 420
consensus_5792#2      ------------------------------------------------------------
consensus_5792#1      ------------------------------------------------------------
                                                                                  

consensus_5792#0      AAATTGCAACATTTCATAAGCAATTCAGATGATCTTAGACAGATTGTTCTGTTGACAGAT 480
consensus_5792#2      ------------------------------------------------------------
consensus_5792#1      ------------------------------------------------------------
                                                                                  

consensus_5792#0      GGAATGGACACTCGTCCTTACAGGCTAAGCTGGCCAAGGTTGTCTGTTGTGTATGATGTA 540
consensus_5792#2      ------------------------------------------------------------
consensus_5792#1      ------------------------------------------------------------
                                                                                  

consensus_5792#0      TCACCTAGAAGAGTCTTCATTACTGCATCACAGCAACTCAGAGGAGCCGGAGCAAAAATA 600
consensus_5792#2      ------------------------------------------------------------
consensus_5792#1      ------------------------------------------------------------
                                                                                  

consensus_5792#0      TCACGGAACTGTGTTGTACTTCATACTTCTTCAGAGTCTCCTGACTTGCAAGCGGGCTTG 660
consensus_5792#2      ------------------------------------------------------------
consensus_5792#1      ------------------------------------------------------------
                                                                                  

consensus_5792#0      AATAAAAATGGCTTCAATGGGAATAGGCCGAGCTTGTGGGTACTGCAGGGTTTACCTTTG 720
consensus_5792#2      ------------------------------------------------------------
consensus_5792#1      ------------------------------------------------------------
                                                                                  

consensus_5792#0      TTCACTTTTAAAAGCTTGGAGGACCTTTTGCTTGTCATTGGCAATTTAGCAATGAAAGGG 780
consensus_5792#2      ------------------------------------------------------------
consensus_5792#1      ------------------------------------------------------------
                                                                                  

consensus_5792#0      AGTATCTTTATAGGGGAGGTGCCACGTTTTACGCAGTGGGGAGCAGCAACAGACATGGCC 840
consensus_5792#2      ------------------------------------------------------------
consensus_5792#1      ------------------------------------------------------------
                                                                                  

consensus_5792#0      TCAGAGCAAGACAGGCTGGAAAACCTTTCCTTTACTCAGGGTTTTCGTGTCAGCTTTGTT 900
consensus_5792#2      ------------------------------------------------------------
consensus_5792#1      ------------------------------------------------------------
                                                                                  

consensus_5792#0      CACTATGAAGAAGTGGCAAAGGATGTTGGCTTAGGTCTAGACTCTCCACCGGAAATACAT 960
consensus_5792#2      ------------------------------------------------------------
consensus_5792#1      ------------------------------------AGAGTCTCCTGACTTGCAAGCGGG 24
                                                                                  

consensus_5792#0      GGTAGAGCTATTTTTATTGCAGAACAGCTGCGTTTCTCAGATGCTCAGATGGAGAGCTTC 1020
consensus_5792#2      -----------------------------------------------------------C 1
consensus_5792#1      CTTGAATAAAAATGGCTTCAATGGGAATAGGCCGAGCTTGTGGGTACTGCAGGGTTTACC 84
                                                                                 *

consensus_5792#0      CGGATGCA-TTTTGAAAGAATAGAGGAT------------GATGCCGATGAAG--ACGGA 1065
consensus_5792#2      CGGATGCA-TTTTGAAAGAATAGAGGAT------------GATGCCGATGAAG--ACGGA 46
consensus_5792#1      TTTGTTCACTTTTAAAAGCTTGGAGGACCTTTTGCTTGTCATTGGCAATTTAGCAATGAA 144
                          * ** **** ****  * *****               ** * **  **  * * *

consensus_5792#0      TTCGAGGAACTTTA--------GTCCAATCTATGATGCTTGATGGCTCTTGAAAAATGAT 1117
consensus_5792#2      TTCGAGGAACTTTA--------GTCCAATCTATGATGCTTGATGGCTCTTGAAAAATGAT 98
consensus_5792#1      AGGGAGTATCTTTATAGGGGAGGTGCCACGTTTTACGCAGTGGGGAGCATCAGCAGACAT 204
                         *** * *****        ** * *  * * * **     **  * * *  *   **

consensus_5792#0      G--CTCGATGTACTTGAAACTTGAGAATGTTTTTGACTTGTGTGGGATTGGGAATA---- 1171
consensus_5792#2      G--CTCGATGTACTTGAAACTTGAGAATGTTTTTGACTTGTGTGGGATTGGGAATA---- 152
consensus_5792#1      GGCCTCAGAGCAAGACAGGCTGGAAAACCTTTTCTTTACTCAGGGTTTTCGTGTCAGCTT 264
                      *  ***   * *    *  ** ** **  ****          **  ** *    *    

consensus_5792#0      TACCC-TGGAAAGAGAGAGCCTGTAAATGTATGCATTAGATTGTATTCTTCAAAACAGAT 1230
consensus_5792#2      TACCCCTGGAAAGAGAGAGCCTGTAAATGTATGCATTAGATTGTATTCTTCAAAACAGAT 212
consensus_5792#1      TGTTCACTATGAAGAAGTGGCAAAGGATGTTGGCTTAGGTCTAGACTCTCCACCGGAAAT 324
                      *   *      *   ** * *     ****  ** *  *  *  * *** **    * **

consensus_5792#0      GTATGCATTAGATTCTTGCGA-GCAGAAAGTTTCCGTATGGAAA-----CATGTAAT--A 1282
consensus_5792#2      GTATGCATTAGATTCTTGCGA-GCAGAAAGTTTCCGTATGGAAA-----CATGTAAT--A 264
consensus_5792#1      ACATGGTAGAGCTCTTTTTATTGCAGAACAGCTGCGTTTCTCAGATGCTCAGGTAATGAA 384
                        ***    ** *  **     ******    * *** *   *      ** *****  *

consensus_5792#0      ATCGGCA-TGTTTTTCTGTCACCATTTATATGGCTATATGTTTACTGGGATGTCTCAGAT 1341
consensus_5792#2      ATCGGCA-TGTTTTTCTGTCACCATTTATATGGCTATATGTTTACTGGGATGTCTCAGAT 323
consensus_5792#1      ACCAACTCTATTCCTTCGACATGGATTCTAACTTCAATGATTCTGGGGGTTGGCGTGAGC 444
                      * *  *  * **  *  * **    ** **     *    **    *** ** *      

consensus_5792#0      ATCTGTGATTGCCAC---ATATTTATGAAT------------------- 1368
consensus_5792#2      ATCTGTGATTGCCAC---CAAAAAAAAAA-------------------- 349
consensus_5792#1      TCTAAANAATATCACTCTCACATCTGGAAATTGCCCATAACCTTTTGAT 493
                             * *  ***            **                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)