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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5797#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1168 fasta sequence
[ATTATGGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCTCCCCGCCGGCAGCCAGGACCACATGAACGCGCTCCGCTCCACCGCACTCCGCCGCTCCACCCTGCACTGGGACGCCGCCGCGGCCTTCTTCGCCCCGCCCTTCCGCTCCCGAAGCTGCCGCCGCCGCCGCGTGCCTGCTCCTGCCGCCGCCGCCGAGACGAGGCCCACCAGGTCCCCCTCTAGGGCTAGGGCCAGGGCGCGGGCGAAGCTACTGGCGGACGCCGATACGAGGGACCCCTGGCTGGCCTCCCTCTCGCTGCTCCCGGTCGACGACGGCGAGGCCGCCGCCGCCGCCGCCGCGGCCTCCACCGGCTGGGCGATTGGGGTGGATCCCGATACGGGCGGCGCAATCGCCGTCCTCTCGCCCGACGGGTCCTCGCAGGTGTTTGATAACCCGTTCGTGCACATAGTGGTCTCGGAGTTCATCCGGAAGCGCTTGGACACCAAATCCATCATCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTGCATCTGGTTTTTCAGTTGTTCCAGTTGCATCACAGACCTGGAAGGCTTATTTTGGGCTAACACGAAGCGGATCACCTAAGGACTATAGCAGGCAAGCTGCTTCAATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAACATCATGGGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGCCATCAGGGGAGTTCAGCAAAACATTATGACAATCCGACTTTTATAGGGAGGCTTGACTGACTGATCATTTTGAGTGGACTGGTGCAAACATTTTGGTATTTCCCCATGGGCGCCATCAAGTATATAATTGAAGTAAGCCCGGAGGGTGCGTGCACTAGTCCGTTCAATTTTCAGGAACACATTAGCAGTGTACCATTGTGTTTAACAAGCTACTGTAAATGATATTATTGCTGTTTGAACGGTTGATTTGAAGTTGGAAATGAACCGATGATTCTTTTTTTTTTGGGTGAGCGAGATTGTAGCAGTCTTTTTAAGGCTTTTAATTATAAG]
[+] EMBL AK062596 [ATTATGGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCTCCCCGCCGGCAGCCAGGACCACATGAACGCGCTCCGCTCCACCGCACTCCGCCGCTCCACCCTGCACTGGGACGCCGCCGCGGCCTTCTTCGCCCCGCCCTTCCGCTCCCGAAGCTGCCGCCGCCGCCGCGTGCCTGCTCCTGCCGCCGCCGCCGAGACGAGGCCCACCAGGTCCCCCTCTAGGGCTAGGGCCAGGGCGCGGGCGAAGCTACTGGCGGACGCCGATACGAGGGACCCCTGGCTGGCCTCCCTCTCGCTGCTCCCGGTCGACGACGGCGAGGCCGCCGCCGCCGCCGCCGCGGCCTCCACCGGCTGGGCGATTGGGGTGGATCCCGATACGGGCGGCGCAATCGCCGTCCTCTCGCCCGACGGGTCCTCGCAGGTGTTTGATAACCCGTTCGTGCACATAGTGGTCTCGGAGTTCATCCGGAAGCGCTTGGACACCAAATCCATCATCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTGCATCTGGTTTTTCAGTTGTTCCAGTTGCATCACAGACCTGGAAGGCTTATTTTGGGCTAACACGAAGCGGATCACCTAAGGACTATAGCAGGCAAGCTGCTTCAATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAACATCATGGGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGCCATCAGGGGAGTTCAGCAAAACATTATGACAATCCGACTTTTATAGGGAGGCTTGACTGACTGATCATTTTGAGTGGACTGGTGCAAACATTTTGGTATTTCCCCATGGGCGCCATCAAGTATATAATTGAAGTAAGCCCGGAGGGTGCGTGCACTAGTCCGTTCAATTTTCAGGAACACATTAGCAGTGTACCATTGTGTTTAACAAGCTACTGTAAATGATATTATTGCTGTTTGAAC ]
[-] EMBL CB657243 [ TCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTGCATCTGGTTTTTCAGTTGTTCCAGTTGCATCACAGACCTGGAAGGCTTATTTTGGGCTAACACGAAGCGGATCCCCTAAGGACTATAGCAGGCAAGCTGCTTCAATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAACATCATGGGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGCCATCAGGGGAGTTCAGCAAAACATTATGACAATCCGACTTTTATAGGGAGGCTTGACTGACTGATCATTTTGAGTGGACTGGTGCAAACATTTTGGTATTTCCTCATGGGCGCCATCAAGTATATAATTGAAGTAAGCCCGGAGGGTGCGTGCACTAGTCCGTTCAATTTTCAGGAACCCATTAGCAGTGTACCATTGTGTTTAACAAGCTACTGTAAATGATATTATTGCTGTTTGAACGGTTGATTTGAAGTTGGAAATGAACCGATGATTCTTTTTTTTTTGGGTGAGCGAGATTGTAGCAGTCTTTTTAAGGCTTTTAATTATAAG]
consensusID : consensus_5797#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 747 fasta sequence
[TGGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCTCCCCGCCGGCAGCCAGGACCACATGAACGCGCTCCGCTCCACCGCACTCCGCCGCTCCACCCTGCACTGGGACGCCGCCGCGGCCTTCTTCGCCCCGCCCTTCCGCTCCCGAAGCTGCCGCCGCCGCCGCGTGCCTGCTCCTGCCGCCGCCGCCGAGACGAGGCCCACCAGGTCCCCCTCTAGGGCTAGGGCCAGGGCGCGGGCGAAGCTACTGGCGGACGCCGATACGAGGGACCCCTGGCTGGCCTCCCTCTCGCTGCTCCCGGTCGACGACGGCGAGGCCGCCGCCGCCGCCGCCGCGGCCTCCACCGGCTGGGCGATTGGGGTGGATCCCGATACGGGCGGCGCAATCGCCGTCCTCTCGCCCGACGGGTCCTCGCAGGTATGGCTGGGTTTCTTTGCTCCGATGGAACTCGCGCATTCTGTGTGTACAACTTGTGTGCTTGAGCAAAGGCGTTCATGTCTTGCAGGTGTTTGATAACCCGTTCGTGCACATAGTGGTCTCGGAGTTCATCCGGAAGCGCTTGGACACCAAATCCATCATCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTGCATCTGGTTTTTCAGTTGTTCCAGTTGCA]
[+] EMBL CB657242 [TGGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCTCCCCGCCGGCAGCCAGGACCACATGAACGCGCTCCGCTCCACCGCACTCCGCCGCTCCACCCTGCACTGGGACGCCGCCGCGGCCTTCTTCGCCCCGCCCTTCCGCTCCCGAAGCTGCCGCCGCCGCCGCGTGCCTGCTCCTGCCGCCGCCGCCGAGACGAGGCCCACCAGGTCCCCCTCTAGGGCTAGGGCCAGGGCGCGGGCGAAGCTACTGGCGGACGCCGATACGAGGGACCCCTGGCTGGCCTCCCTCTCGCTGCTCCCGGTCGACGACGGCGAGGCCGCCGCCGCCGCCGCCGCGGCCTCCACCGGCTGGGCGATTGGGGTGGATCCCGATACGGGCGGCGCAATCGCCGTCCTCTCGCCCGACGGGTCCTCGCAGGTATGGCTGGGTTTCTTTGCTCCGATGGAACTCGCGCATTCTGTGTGTACAACTTGTGTGCTTGAGCAAAGGCGTTCATGTCTTGCAGGTGTTTGATAACCCGTTCGTGCACATAGTGGTCTCGGAGTTCATCCGGAAGCGCTTGGACACCAAATCCATCATCGAGCTGCTCCGTGGCCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTGCATCTGGTTTTTCAGTTGTTCCAGTTGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5797#0 ATTATGGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCTCCCCGCCGGCAGCCAGGAC 60
consensus_5797#1 ----TGGCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCTCCCCGCCGGCAGCCAGGAC 56
********************************************************
consensus_5797#0 CACATGAACGCGCTCCGCTCCACCGCACTCCGCCGCTCCACCCTGCACTGGGACGCCGCC 120
consensus_5797#1 CACATGAACGCGCTCCGCTCCACCGCACTCCGCCGCTCCACCCTGCACTGGGACGCCGCC 116
************************************************************
consensus_5797#0 GCGGCCTTCTTCGCCCCGCCCTTCCGCTCCCGAAGCTGCCGCCGCCGCCGCGTGCCTGCT 180
consensus_5797#1 GCGGCCTTCTTCGCCCCGCCCTTCCGCTCCCGAAGCTGCCGCCGCCGCCGCGTGCCTGCT 176
************************************************************
consensus_5797#0 CCTGCCGCCGCCGCCGAGACGAGGCCCACCAGGTCCCCCTCTAGGGCTAGGGCCAGGGCG 240
consensus_5797#1 CCTGCCGCCGCCGCCGAGACGAGGCCCACCAGGTCCCCCTCTAGGGCTAGGGCCAGGGCG 236
************************************************************
consensus_5797#0 CGGGCGAAGCTACTGGCGGACGCCGATACGAGGGACCCCTGGCTGGCCTCCCTCTCGCTG 300
consensus_5797#1 CGGGCGAAGCTACTGGCGGACGCCGATACGAGGGACCCCTGGCTGGCCTCCCTCTCGCTG 296
************************************************************
consensus_5797#0 CTCCCGGTCGACGACGGCGAGGCCGCCGCCGCCGCCGCCGCGGCCTCCACCGGCTGGGCG 360
consensus_5797#1 CTCCCGGTCGACGACGGCGAGGCCGCCGCCGCCGCCGCCGCGGCCTCCACCGGCTGGGCG 356
************************************************************
consensus_5797#0 ATTGGGGTGGATCCCGATACGGGCGGCGCAATCGCCGTCCTCTCGCCCGACGGGTCCTCG 420
consensus_5797#1 ATTGGGGTGGATCCCGATACGGGCGGCGCAATCGCCGTCCTCTCGCCCGACGGGTCCTCG 416
************************************************************
consensus_5797#0 CAGGT------------------------------------------------------- 425
consensus_5797#1 CAGGTATGGCTGGGTTTCTTTGCTCCGATGGAACTCGCGCATTCTGTGTGTACAACTTGT 476
*****
consensus_5797#0 ---------------------------------GTTTGATAACCCGTTCGTGCACATAGT 452
consensus_5797#1 GTGCTTGAGCAAAGGCGTTCATGTCTTGCAGGTGTTTGATAACCCGTTCGTGCACATAGT 536
***************************
consensus_5797#0 GGTCTCGGAGTTCATCCGGAAGCGCTTGGACACCAAATCCATCATCGAGCTGCTCCGTGG 512
consensus_5797#1 GGTCTCGGAGTTCATCCGGAAGCGCTTGGACACCAAATCCATCATCGAGCTGCTCCGTGG 596
************************************************************
consensus_5797#0 CCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGA 572
consensus_5797#1 CCTCGATGCGCCTCCTGGAACTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGA 656
************************************************************
consensus_5797#0 TGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGT 632
consensus_5797#1 TGGAAAGCTGGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGT 716
************************************************************
consensus_5797#0 TGCATCTGGTTTTTCAGTTGTTCCAGTTGCATCACAGACCTGGAAGGCTTATTTTGGGCT 692
consensus_5797#1 TGCATCTGGTTTTTCAGTTGTTCCAGTTGCA----------------------------- 747
*******************************
consensus_5797#0 AACACGAAGCGGATCACCTAAGGACTATAGCAGGCAAGCTGCTTCAATCTTGTTCCCGGA 752
consensus_5797#1 ------------------------------------------------------------
consensus_5797#0 CAAGGCCCTGTCCCTGAATAGGAAGAAACATCATGGGCGAGCAGAGGCCCTTTTGTTAGC 812
consensus_5797#1 ------------------------------------------------------------
consensus_5797#0 GGCCTACGGAAAAGGTCTTGTGCTGCCATCAGGGGAGTTCAGCAAAACATTATGACAATC 872
consensus_5797#1 ------------------------------------------------------------
consensus_5797#0 CGACTTTTATAGGGAGGCTTGACTGACTGATCATTTTGAGTGGACTGGTGCAAACATTTT 932
consensus_5797#1 ------------------------------------------------------------
consensus_5797#0 GGTATTTCCCCATGGGCGCCATCAAGTATATAATTGAAGTAAGCCCGGAGGGTGCGTGCA 992
consensus_5797#1 ------------------------------------------------------------
consensus_5797#0 CTAGTCCGTTCAATTTTCAGGAACACATTAGCAGTGTACCATTGTGTTTAACAAGCTACT 1052
consensus_5797#1 ------------------------------------------------------------
consensus_5797#0 GTAAATGATATTATTGCTGTTTGAACGGTTGATTTGAAGTTGGAAATGAACCGATGATTC 1112
consensus_5797#1 ------------------------------------------------------------
consensus_5797#0 TTTTTTTTTTGGGTGAGCGAGATTGTAGCAGTCTTTTTAAGGCTTTTAATTATAAG 1168
consensus_5797#1 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||