cluster # 5799

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Oryza sativa
cluster # 5799 cluster # 5799 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5799#0 length = 696 sequences # 2

consensus_5799#1 length = 624 sequences # 1

consensusID : consensus_5799#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 696
fasta sequence

                              [CCTTTTTTTTTTTTTTTTTTTTTGCTGACATTTGGGATGAACCTTCATATATATGACTCCGTATAATCTAATACTCCTATACTGATCTACTTTACACAAAGCAGAAAACATCCTGGATTCCTGATAATCTACCACTCCATTATGATCCACAAGAGATAAAAATACTCAAGGGTGATGAACACTAAACATGCAAAGACATATGCAACCATGCAAGAATTCCACTGTGAAAAAGACGGACAATTCTCTGAGTTCTTCTGGCTTAAATCCAACTCGCAATACGTCCATCCAAAGGGAATGGTCACCATCAAACTCCAGCCGCCGCGGTGGCACGGTCACGGCGTGTAAACCGGCGCGAACCAAAAGCAGGGCGGCTTGTACCCCTCCGCCATGGGGATCGACTCGATGACCTCGATCCTCTTGTGCTTGCCCTTGGCCGCCGCGGCGAGGCTGTACGCGCACACGCGCGTCTCGCCGGCGAGGTCCACGGCGAAGTACACGGTGCTGGGTCGCAGCCCGGGGCACTCCCGCGTAGACGCCGCCACCGCGCCCGACGCGTCCACGAGCACCGCCACGTCGCCGATGTCGTCCGCCTCCTCCCACGTCTCGCCGCATTCGTCCAGCACGCGCACCAAGAACCCCTCCTCCTCGTCCTCGCCGCCGCCGGAAGCGGCCACGGGCCGGAGCAGCTCCACCTGC]

[+] EMBL CB645449             [CCTTTTTTTTTTTTTTTTTTTTTGCTGACATTTGGGATGAACCTTCATATATATGACTCCGTATAATCTAATACTCCTATACTGATCTACTTTACACAAAGCAGAAAACATCCTGGATTCCTGATAATCTACCACTCCATTATGATCCACAAGAGATAAAAATACTCAAGGGTGATGAACACTAAACATGCAAAGACATATGCAACCATGCAAGAATTCCACTGTGAAAAAGACGGACAATTCTCTGAGTTCTTCTGGCTTAAATCCAACTCGCAATACGTCCATCCAAAGGGAATGGTCACCATCAAACTCCAGCCGCCGCGGTGGCACGGTCACGGCGTGTAAACCGGCGCGAACCAAAAGCAGGGCGGCTTGTACCCCTCCGCCATGGGGATCGACTCGATGACCTCGATCCTCTTGTGCTTGCCCTTGGCCGCCGCGGCGAGGCTGTACGCGCACACGCGCGTCTCGCCGGCGAGGTCCACGGCGAAGTACACGGTGCTGGGTCGCAGCCCGGGGCACTCCCGCGTAGACGCCGCCACCGCGCCCGACGCGTCCACGAGCACCGCCACGTCGCCGATGTCGTCCGCCTCCTCCCACGTCTCGCCGCATTCGTCCAGCACGCGCACCAAGAACCCCTCCTCCTCGTCCTCGCCGCCGCCGGAAGCGGCCACGGGCCGGAGCAGCT        ]
[+] EMBL C98002               [                                                                                                                      nCCTGATAATGTACCACTCCATTATGATCCACAAGAGAT AAAATAGTCAAGGTTGATGAACACTAGACATGCAAAGACATATGCAACCATGCAAGAATTCCACTGTGAAGAAGACGGACAATTCTCTGAGTTCTTCTGGCTTAGATCCAACTCGCAATACGTCNATCCAAAGGCAATGGTCACCATCAAACTCGAGCCGCCGCGGTGGNACGGTCACGGNGTGTAGACCGGCGCGAACCAGAAGCAGGGCGGCTTGTACCCCTCCGCCATGGGGATCGACTCGATGACCTCGATCCTCTTGTGCTTGCCCTTGGCCGCCGCGGCGAGGCTGTA GCGCACACGCGCGTCTCGCCGGCGAGGTCCACGGCGAAGTACACGGTGCTGGGTCGCAGCCCGGGGNANTCCCGCGTAGACGCCGCCACCGCGCCCGACGCGTCCACGAGCACCGCCACGTCGCCGATGTCGTCCGCCTCCTCCCACGTCTCGCCGCATTCGTCCAGCACGCGCACCACGAACCCCTCCTCCTCGTCCTCGCCGCCGCCGGACGCGGCCACGGGCCGGAGCAGCTCCACCTGC]




>consensus_5799#0
CCTTTTTTTTTTTTTTTTTTTTTGCTGACATTTGGGATGAACCTTCATATATATGACTCC
GTATAATCTAATACTCCTATACTGATCTACTTTACACAAAGCAGAAAACATCCTGGATTC
CTGATAATCTACCACTCCATTATGATCCACAAGAGATAAAAATACTCAAGGGTGATGAAC
ACTAAACATGCAAAGACATATGCAACCATGCAAGAATTCCACTGTGAAAAAGACGGACAA
TTCTCTGAGTTCTTCTGGCTTAAATCCAACTCGCAATACGTCCATCCAAAGGGAATGGTC
ACCATCAAACTCCAGCCGCCGCGGTGGCACGGTCACGGCGTGTAAACCGGCGCGAACCAA
AAGCAGGGCGGCTTGTACCCCTCCGCCATGGGGATCGACTCGATGACCTCGATCCTCTTG
TGCTTGCCCTTGGCCGCCGCGGCGAGGCTGTACGCGCACACGCGCGTCTCGCCGGCGAGG
TCCACGGCGAAGTACACGGTGCTGGGTCGCAGCCCGGGGCACTCCCGCGTAGACGCCGCC
ACCGCGCCCGACGCGTCCACGAGCACCGCCACGTCGCCGATGTCGTCCGCCTCCTCCCAC
GTCTCGCCGCATTCGTCCAGCACGCGCACCAAGAACCCCTCCTCCTCGTCCTCGCCGCCG
CCGGAAGCGGCCACGGGCCGGAGCAGCTCCACCTGC

consensusID : consensus_5799#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 624
fasta sequence

                              [CAAAAGGAACACACCAACGCAAAGGCCATTTGGGGGAAGAGGTTATCCAAAAACCCGTTGAATTTAAGAAGGGGTTATTTTTCAATAAACCATCTTATATAGGGAATCATAAAACTTAAGAGAAATTTGCATATATGCTACTTGAAAAAACTAGCTTCGCTAGAATGCCACTCTCAAAATGGGATTCGACCAATGCCACTATCAATTTGGGGGCATTCGCTGAAATGCCACCTTCGGCCTTTTTCTATTTCAAAATATTTTTCATCAATTTTAGTTTTTCTCGGACGTTTATGCCCCTAAGTCAACTGCTGAATCGTACGTTGAATCGATTGACAGTTTCTTCTCTGTTTCTCTCGATCCTCATGTGCTTGCCCTTTCCCGCTGTGGCGAGGCTGTGTGCGCGCACGCGCGTCTGGCCGACGAGGTTGACGGCGAAGTACACGGTGCTCGGCCTCAGCCCAAGGCATTCACCGCGTGGACGCCGCCACCGTGCCGGACGTGTCCACGAGCACCGCCACGTCACCGATGTTGTCCGCCTTCACCCACGTCTCGCCGCACTCGTCCAGCACGCGCACCACGAACCCCTCCTCGACCACGACCACGGGCTGGAGCAGCTCCAACTGC]

[+] EMBL BI807573             [CAAAAGGAACACACCAACGCAAAGGCCATTTGGGGGAAGAGGTTATCCAAAAACCCGTTGAATTTAAGAAGGGGTTATTTTTCAATAAACCATCTTATATAGGGAATCATAAAACTTAAGAGAAATTTGCATATATGCTACTTGAAAAAACTAGCTTCGCTAGAATGCCACTCTCAAAATGGGATTCGACCAATGCCACTATCAATTTGGGGGCATTCGCTGAAATGCCACCTTCGGCCTTTTTCTATTTCAAAATATTTTTCATCAATTTTAGTTTTTCTCGGACGTTTATGCCCCTAAGTCAACTGCTGAATCGTACGTTGAATCGATTGACAGTTTCTTCTCTGTTTCTCTCGATCCTCATGTGCTTGCCCTTTCCCGCTGTGGCGAGGCTGTGTGCGCGCACGCGCGTCTGGCCGACGAGGTTGACGGCGAAGTACACGGTGCTCGGCCTCAGCCCAAGGCATTCACCGCGTGGACGCCGCCACCGTGCCGGACGTGTCCACGAGCACCGCCACGTCACCGATGTTGTCCGCCTTCACCCACGTCTCGCCGCACTCGTCCAGCACGCGCACCACGAACCCCTCCTCGACCACGACCACGGGCTGGAGCAGCTCCAACTGC]




>consensus_5799#1
CAAAAGGAACACACCAACGCAAAGGCCATTTGGGGGAAGAGGTTATCCAAAAACCCGTTG
AATTTAAGAAGGGGTTATTTTTCAATAAACCATCTTATATAGGGAATCATAAAACTTAAG
AGAAATTTGCATATATGCTACTTGAAAAAACTAGCTTCGCTAGAATGCCACTCTCAAAAT
GGGATTCGACCAATGCCACTATCAATTTGGGGGCATTCGCTGAAATGCCACCTTCGGCCT
TTTTCTATTTCAAAATATTTTTCATCAATTTTAGTTTTTCTCGGACGTTTATGCCCCTAA
GTCAACTGCTGAATCGTACGTTGAATCGATTGACAGTTTCTTCTCTGTTTCTCTCGATCC
TCATGTGCTTGCCCTTTCCCGCTGTGGCGAGGCTGTGTGCGCGCACGCGCGTCTGGCCGA
CGAGGTTGACGGCGAAGTACACGGTGCTCGGCCTCAGCCCAAGGCATTCACCGCGTGGAC
GCCGCCACCGTGCCGGACGTGTCCACGAGCACCGCCACGTCACCGATGTTGTCCGCCTTC
ACCCACGTCTCGCCGCACTCGTCCAGCACGCGCACCACGAACCCCTCCTCGACCACGACC
ACGGGCTGGAGCAGCTCCAACTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5799#0      CCTTTTTTTTTTTTTTTTTTTTTGCTGACATTTGGGATGAACCTTCATATATATGACTCC 60
consensus_5799#1      ----------------------------CAAAAGGAACACACCAACGCAAAGGCCATTTG 32
                                                  **   ** *   ***  *  * *    * *  

consensus_5799#0      GTATAATCTAATACTCCTATACTGATCTACTTTACACAAAGCAGAAAACATCCTGGATTC 120
consensus_5799#1      GGGGAAGAGGTTATCCAAAAACCCGTTGAATTTA--------AGAAGGGGTTAT---TTT 81
                      *   **     **  *  * **   *  * ****        ****    *  *   ** 

consensus_5799#0      CTGATAATCTACCACTCCATTATGATCCACAAGAGATAAAAATACTCAAGGGTGATGAAC 180
consensus_5799#1      TCAATAA---ACCATCTTAT--------ATAGGGAATCATAAAACTTAAGAGAAATTTGC 130
                         ****   ****    **        * * *  ** * ** *** *** *  **   *

consensus_5799#0      ACTAAACATGCAAAGACATATGCAACCATGCAAGAATTCCACTGTGAAAAAGACGGACAA 240
consensus_5799#1      A-TATATGCTACTTGAAAAAACTAGCTTCGCTAGAATGCCACTCTCAAAATGGGATTCGA 189
                      * ** *        ** * *   * *   ** ***** ***** * **** *     * *

consensus_5799#0      TTCTCTGAGTTCTTCTGGCTTAAATCCAACTCGCAATACGTCCATCCAAAGGGAATGGTC 300
consensus_5799#1      C---CAATGCCACTATCAATTTGGGGGCATTCGCTGAAATGCCACCTTCGGCCTTTTTCT 246
                          *   *    * *   **       * ****   *   *** *    *    *    

consensus_5799#0      ACCATCAAACTCCAGCCGCCGCGGTGGCACGGTCACGG-CGTGTAAACCGGCGCGAACCA 359
consensus_5799#1      ATTTCAAAATATTTTTCATCAATTTTAGTTTTTCTCGGACGTTTATGCC--CCTAAGTCA 304
                      *     ***       *  *    *       ** *** *** **  **  *   *  **

consensus_5799#0      AAAGCAGGGCGGCTTGTACCCCTCCGCCATGGGGATCGACTCGATGAC-CTCGATCCTCT 418
consensus_5799#1      ACTGCTGAATCGTACGT-TGAATCGATTGACAGTTTCTTCTCTGTTTCTCTCGATCCTCA 363
                      *  ** *    *   **     **        *  **  ***  *  * ********** 

consensus_5799#0      TGTGCTTGCCCTTGGCCGCCGCGGCGAGGCTGTACGCGCACACGCGCGTCTCGCCGGCGA 478
consensus_5799#1      TGTGCTTGCCCTTTCCCGCTGTGGCGAGGCTGTGTGCGCGCACGCGCGTCTGGCCGACGA 423
                      *************  **** * ***********  **** *********** **** ***

consensus_5799#0      GGTCCACGGCGAAGTACACGGTGCTGGGTCGCAGCCCGGGGCACTC-CCGCGTAGACGCC 537
consensus_5799#1      GGTTGACGGCGAAGTACACGGTGCTCGGCCTCAGCCCAAGGCATTCACCGCGTGGACGCC 483
                      ***  ******************** ** * ******  **** ** ****** ******

consensus_5799#0      GCCACCGCGCCCGACGCGTCCACGAGCACCGCCACGTCGCCGATGTCGTCCGCCTCCTCC 597
consensus_5799#1      GCCACCGTGCCGGACGTGTCCACGAGCACCGCCACGTCACCGATGTTGTCCGCCTTCACC 543
                      ******* *** **** ********************* ******* ******** * **

consensus_5799#0      CACGTCTCGCCGCATTCGTCCAGCACGCGCACCAAGAACCCCTCCTCCTCGTCCTCGCCG 657
consensus_5799#1      CACGTCTCGCCGCACTCGTCCAGCACGCGCACCACGAACCCCTCCTC------------- 590
                      ************** ******************* ************             

consensus_5799#0      CCGCCGGAAGCGGCCACGGGCCGGAGCAGCTCCACCTGC 696
consensus_5799#1      -----GACCACGACCACGGGCTGGAGCAGCTCCAACTGC 624
                           *    ** ******** ************ ****