Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5805 cluster # 5805       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5805#0 length = 1556 sequences # 2  
consensus_5805#1 length = 628 sequences # 1  

consensusID : consensus_5805#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1556
fasta sequence
                              [CTAAATTGTAGAGTTACTCTATTATTATCTCCATATCTTTCTATGTATCGTTGGTTAGTTTGAAAATCGAGATTGAATTAGCCAACGTCATTTTTTTAAAAAAAAATGGAGGGAGTATTTTAGAGCTCACATGCACAAAAGTGCTTTCGTAAGCTTAATCATTAAGCATGGAGATATTTTATGTTTTGTTTTTATGCACACAGACCCTTAGAACATCATCTGAACACCGTCAGCCGGAGAAGGCAATCAAAGACGAAGAGGGAAATGAAGAAAAAGATGAAGAGAGACATCTGTCCACGGTCAATTTCAGTGGAGGCAAAAGCCAATTCTTCAACCAGACATGGCAACTCAACGCTGGCTACATGAAAGCAATTCTTCGAGGTCATTTCTTGAGTGCTGTTTCGGTCACTGGACGCCAGCGAAAGAAGAGGAAAGAAGAGCTCAGGCTGCACGCAGCACAGGCCCGCGCGGCTGTCTCGGTTGCTCAGCTCGCCGCAGCAATCGCAGGCATTCGTGTCGGTGTGCGAACTGAGGCCGGACAACCTGAAGTATGTCGAGGCTGCTGACAGCAAGAAGATGGGCACAGTGCTTGCTTCCGCTGCTGCGCTGGTGGCCACCGTCTGCGCAGAGGCTGCAGAGCTCGCTGGGACCAACAGGTCCGGCGTGACTTCCGCCGTGAAAACTGGAGTCGAGAGCTGCTCCTCTGCTGAACTGCTCACCCTCACGGCCACTGCTGCTACATGTCTGAGAGGAGCTGCAGCACTGAAACTGAGGGCAGACGTCAGGGGAATCGGTAGCAACAACAACTCAGTTGGCACCAGCACTACTAGCATCCACAAAGACACAACTCTCAGGGTTAGGCTGCCTTGTGGGAGCGTGCGACTGAGGAAGGTGGCTGTCTTTCCACAGTGCGACAGAGTAGTACTGAGGCTGGGGAAGAAACATCTGCACGGGGCATTCTCAACCTACAAAAATTATGAGGTGCTTGACGTCTCCAGCAACGGCGGCGATGTGGTGGTGGACGGCATGGTGTTGTTCCCGCTGGTGCTCAGAACGGCCGCTGGTGTGGTACAGCTGCTGTTGGACAGTCAGATGCACTGCAAGGTCTGGAAGAATGCCATCGAGGGCATTCTGTCCGACCAAAACGTCAAACACGCTAAACTCTGAGCCGTCGTCGTCAGGCACACGTATACGTACATGTTTAGCTGCAGCTATACACTTCACTGTGTGAGTTTGCTTCTATATGAACCTTTTAATAATTAGCTGTAGCTCTTAGCAAAATCCGAAATGTTTCATTCTATTATAAAAAAAAATTATGTACACTTCACATGATATACAGAGGTGTAGTATACTACTATATTGCACTACAGGTCTTGGGTTGCATTGTGTACTCAATGTACGCCAGTCGCCAGTTGTTGAGGTTTAGTTCTGTAATATAGGTTGCATGGGCTG--TTTTTTTTTTTCCATTCTTCGGTCCTAACCTCACCTACTTTGTACACCAACATGCTTTTGAGAAAATTATGGATGATTGGATGTTATAAAAAAAAAAAAAAAGA]

[+] EMBL AK111422             [CTAAATTGTAGAGTTACTCTATTATTATCTCCATATCTTTCTATGTATCGTTGGTTAGTTTGAAAATCGAGATTGAATTAGCCAACGTCATTTTTTTAAAAAAAAATGGAGGGAGTATTTTAGAGCTCACATGCACAAAAGTGCTTTCGTAAGCTTAATCATTAAGCATGGAGATATTTTATGTTTTGTTTTTATGCACACAGACCCTTAGAACATCATCTGAACACCGTCAGCCGGAGAAGGCAATCAAAGACGAAGAGGGAAATGAAGAAAAAGATGAAGAGAGACATCTGTCCACGGTCAATTTCAGTGGAGGCAAAAGCCAATTCTTCAACCAGACATGGCAACTCAACGCTGGCTACATGAAAGCAATTCTTCGAGGTCATTTCTTGAGTGCTGTTTCGGTCACTGGACGCCAGCGAAAGAAGAGGAAAGAAGAGCTCAGGCTGCACGCAGCACAGGCCCGCGCGGCTGTCTCGGTTGCTCAGCTCGCCGCAGCAATCGCAGGCATTCGTGTCGGTGTGCGAACTGAGGCCGGACAACCTGAAGTATGTCGAGGCTGCTGACAGCAAGAAGATGGGCACAGTGCTTGCTTCCGCTGCTGCGCTGGTGGCCACCGTCTGCGCAGAGGCTGCAGAGCTCGCTGGGACCAACAGGTCCGGCGTGACTTCCGCCGTGAAAACTGGAGTCGAGAGCTGCTCCTCTGCTGAACTGCTCACCCTCACGGCCACTGCTGCTACATGTCTGAGAGGAGCTGCAGCACTGAAACTGAGGGCAGACGTCAGGGGAATCGGTAGCAACAACAACTCAGTTGGCACCAGCACTACTAGCATCCACAAAGACACAACTCTCAGGGTTAGGCTGCCTTGTGGGAGCGTGCGACTGAGGAAGGTGGCTGTCTTTCCACAGTGCGACAGAGTAGTACTGAGGCTGGGGAAGAAACATCTGCACGGGGCATTCTCAACCTACAAAAATTATGAGGTGCTTGACGTCTCCAGCAACGGCGGCGATGTGGTGGTGGACGGCATGGTGTTGTTCCCGCTGGTGCTCAGAACGGCCGCTGGTGTGGTACAGCTGCTGTTGGACAGTCAGATGCACTGCAAGGTCTGGAAGAATGCCATCGAGGGCATTCTGTCCGACCAAAACGTCAAACACGCTAAACTCTGAGCCGTCGTCGTCAGGCACACGTATACGTACATGTTTAGCTGCAGCTATACACTTCACTGTGTGAGTTTGCTTCTATATGAACCTTTTAATAATTAGCTGTAGCTCTTAGCAAAATCCGAAATGTTTCATTCTATTATAAAAAAAAATTATGTACACTTCACATGATATACAGAGGTGTAGTATACTACTATATTGCACTACAGGTCTTGGGTTGCATTGTGTACTCAATGTACGCCAGTCGCCAGTTGTTGAGGTTTAGTTCTGTAATATAGGTTGCATGGGCTG  TTTTTTTTTTTCCATTCTTCGGTCCTAACCTCACCTACTTTGTACACCAACATGCTTTTGAGAAAATTATGGATGAT                           ]
[-] EMBL CB645726             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CAACTCAGTTGGCACCAGCACTACTAGCATCCACAAAGACACAACTCTCAGGGTTAGGCTGCCTTGTGGGAGCGTGCGACTGAGGAAGGTGGCTGTCTTTCCACAGTGCGACAGAGTAGTACTGAGGCTGGGGAAGAAACATTTGCACGGGGCATTCTCAACCTACAAAAATTATGAGGTGCTTGACGTCTCCAGCAACGGCGGCGATGTGGTGGTGGACGGCATGGTGTTGTTCCCGCTGGTGCTCAGAACGGCCGCTGGTGTGGTACAGCTGCTGTTGGACAGTCAGATGCACTGCAAGGTTTGGAAGAATGCCATCGAGGGCATTCTGTCCGACCAAAACGTCAAACACGCTAAACTTTGAGCCGTCGTTGTCAGGCACACGTATACGTACATGTTTAGCTGCAGCTATACACTTCACTGTGTGAGTTTGCTTTTATATGAACCTTTTAATAATTAGCTGTAGCTTTTAGCAAAATCCGAAATGTTTCATTTTATTATAAAAAAAAATTATGTACACTTCACATGATATACAGAGGTGTAGTATACTACTATATTGCACTACAGGTCTTGGGTTGCATTGTGTACTCAATGTACGCCAGTCGCCAGTTGTTGAGGTTTAGTTCTGTAATATAGGTTGCATGGGCTGTTTTTTTTTTTTTCCATTCTTCGGTCCTAACCTCACCTACTTTGTACACCAACATGCTTTTGAGAAAATTATGGATGATTGGATGTTATAAAAAAAAAAAAAAAGA]


>consensus_5805#0 CTAAATTGTAGAGTTACTCTATTATTATCTCCATATCTTTCTATGTATCGTTGGTTAGTT TGAAAATCGAGATTGAATTAGCCAACGTCATTTTTTTAAAAAAAAATGGAGGGAGTATTT TAGAGCTCACATGCACAAAAGTGCTTTCGTAAGCTTAATCATTAAGCATGGAGATATTTT ATGTTTTGTTTTTATGCACACAGACCCTTAGAACATCATCTGAACACCGTCAGCCGGAGA AGGCAATCAAAGACGAAGAGGGAAATGAAGAAAAAGATGAAGAGAGACATCTGTCCACGG TCAATTTCAGTGGAGGCAAAAGCCAATTCTTCAACCAGACATGGCAACTCAACGCTGGCT ACATGAAAGCAATTCTTCGAGGTCATTTCTTGAGTGCTGTTTCGGTCACTGGACGCCAGC GAAAGAAGAGGAAAGAAGAGCTCAGGCTGCACGCAGCACAGGCCCGCGCGGCTGTCTCGG TTGCTCAGCTCGCCGCAGCAATCGCAGGCATTCGTGTCGGTGTGCGAACTGAGGCCGGAC AACCTGAAGTATGTCGAGGCTGCTGACAGCAAGAAGATGGGCACAGTGCTTGCTTCCGCT GCTGCGCTGGTGGCCACCGTCTGCGCAGAGGCTGCAGAGCTCGCTGGGACCAACAGGTCC GGCGTGACTTCCGCCGTGAAAACTGGAGTCGAGAGCTGCTCCTCTGCTGAACTGCTCACC CTCACGGCCACTGCTGCTACATGTCTGAGAGGAGCTGCAGCACTGAAACTGAGGGCAGAC GTCAGGGGAATCGGTAGCAACAACAACTCAGTTGGCACCAGCACTACTAGCATCCACAAA GACACAACTCTCAGGGTTAGGCTGCCTTGTGGGAGCGTGCGACTGAGGAAGGTGGCTGTC TTTCCACAGTGCGACAGAGTAGTACTGAGGCTGGGGAAGAAACATCTGCACGGGGCATTC TCAACCTACAAAAATTATGAGGTGCTTGACGTCTCCAGCAACGGCGGCGATGTGGTGGTG GACGGCATGGTGTTGTTCCCGCTGGTGCTCAGAACGGCCGCTGGTGTGGTACAGCTGCTG TTGGACAGTCAGATGCACTGCAAGGTCTGGAAGAATGCCATCGAGGGCATTCTGTCCGAC CAAAACGTCAAACACGCTAAACTCTGAGCCGTCGTCGTCAGGCACACGTATACGTACATG TTTAGCTGCAGCTATACACTTCACTGTGTGAGTTTGCTTCTATATGAACCTTTTAATAAT TAGCTGTAGCTCTTAGCAAAATCCGAAATGTTTCATTCTATTATAAAAAAAAATTATGTA CACTTCACATGATATACAGAGGTGTAGTATACTACTATATTGCACTACAGGTCTTGGGTT GCATTGTGTACTCAATGTACGCCAGTCGCCAGTTGTTGAGGTTTAGTTCTGTAATATAGG TTGCATGGGCTGTTTTTTTTTTTCCATTCTTCGGTCCTAACCTCACCTACTTTGTACACC AACATGCTTTTGAGAAAATTATGGATGATTGGATGTTATAAAAAAAAAAAAAAAGA



consensusID : consensus_5805#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence
                              [TATATCCCTCTCAACGTAACCTGATTAAGTTGGTGGTTATGGAGCATTTCACAAGAGGAGTGGTGCTCGGGATGCCTTCCCTCCAAAGATGCCATTCACTGTCATGTCAAATGGCAGAGCGCCCACAGATTGATGTGCGGAAGGCAGTGATCCAGTGTAAAGAGGAATCACGGTGCTCAAAATGCTGCCATCCTGCAGATATGCCGATCATTCCTGAGCAGGCAATGGAGTTCCTCTCTCGAACATGGAGCCCCTCATCATCAGATTTCTTCCAAACCCTTAGAACATCATCTGAACACCGTCAGCCGGAGAAGGCAATCAAAGACGAAGAGGGAAATGAAGAAAAAGATGAAGAGAGACATCTGTCCACGGTCAATTTCAGTGGAGGCAAAAGCCAATTCTTCAACCAGACATGGCAACTCAACGCTGGCTACATGAAAGCAATTCTTCGAGGTCATTTCTTGAGTGCTGTTTCGGTCACTGGACGCCAGCGAAAGAAGAGGAAAGAAGAGCTCAGGCTGCACGCAGCACAGGCCCGCGCGGCTGTCTCGGTTGCTCAGCTCGCCGCAGCAATCGCAGGCATTCGTGTCGGTGTGCGAACTGAGGCCCGGACAACCTGAAGTATGTC]

[+] EMBL CB645725             [TATATCCCTCTCAACGTAACCTGATTAAGTTGGTGGTTATGGAGCATTTCACAAGAGGAGTGGTGCTCGGGATGCCTTCCCTCCAAAGATGCCATTCACTGTCATGTCAAATGGCAGAGCGCCCACAGATTGATGTGCGGAAGGCAGTGATCCAGTGTAAAGAGGAATCACGGTGCTCAAAATGCTGCCATCCTGCAGATATGCCGATCATTCCTGAGCAGGCAATGGAGTTCCTCTCTCGAACATGGAGCCCCTCATCATCAGATTTCTTCCAAACCCTTAGAACATCATCTGAACACCGTCAGCCGGAGAAGGCAATCAAAGACGAAGAGGGAAATGAAGAAAAAGATGAAGAGAGACATCTGTCCACGGTCAATTTCAGTGGAGGCAAAAGCCAATTCTTCAACCAGACATGGCAACTCAACGCTGGCTACATGAAAGCAATTCTTCGAGGTCATTTCTTGAGTGCTGTTTCGGTCACTGGACGCCAGCGAAAGAAGAGGAAAGAAGAGCTCAGGCTGCACGCAGCACAGGCCCGCGCGGCTGTCTCGGTTGCTCAGCTCGCCGCAGCAATCGCAGGCATTCGTGTCGGTGTGCGAACTGAGGCCCGGACAACCTGAAGTATGTC]


>consensus_5805#1 TATATCCCTCTCAACGTAACCTGATTAAGTTGGTGGTTATGGAGCATTTCACAAGAGGAG TGGTGCTCGGGATGCCTTCCCTCCAAAGATGCCATTCACTGTCATGTCAAATGGCAGAGC GCCCACAGATTGATGTGCGGAAGGCAGTGATCCAGTGTAAAGAGGAATCACGGTGCTCAA AATGCTGCCATCCTGCAGATATGCCGATCATTCCTGAGCAGGCAATGGAGTTCCTCTCTC GAACATGGAGCCCCTCATCATCAGATTTCTTCCAAACCCTTAGAACATCATCTGAACACC GTCAGCCGGAGAAGGCAATCAAAGACGAAGAGGGAAATGAAGAAAAAGATGAAGAGAGAC ATCTGTCCACGGTCAATTTCAGTGGAGGCAAAAGCCAATTCTTCAACCAGACATGGCAAC TCAACGCTGGCTACATGAAAGCAATTCTTCGAGGTCATTTCTTGAGTGCTGTTTCGGTCA CTGGACGCCAGCGAAAGAAGAGGAAAGAAGAGCTCAGGCTGCACGCAGCACAGGCCCGCG CGGCTGTCTCGGTTGCTCAGCTCGCCGCAGCAATCGCAGGCATTCGTGTCGGTGTGCGAA CTGAGGCCCGGACAACCTGAAGTATGTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5805#0      -------------------------------------------------CTAAATTGTAG 11
consensus_5805#1      TATATCCCTCTCAACGTAACCTGATTAAGTTGGTGGTTATGGAGCATTTCACAAGAGGAG 60
                                                                       *  **  * **

consensus_5805#0      AGTTACTCT--ATTATTATCTCCATATCTTTCTATGTATCGTTG-GTTAGTTTGAAAATC 68
consensus_5805#1      TGGTGCTCGGGATGCCTTCCCTCCAAAGATGCCATTCACTGTCATGTCAAATGGCAGAGC 120
                       * * ***   **   *  *  *  *   * * **  *  **   ** *  * * * * *

consensus_5805#0      G-----AGATTGAATTAGCCAACGTCATTTTTTTAAAAAAAAATGGAGGGA--GTATTTT 121
consensus_5805#1      GCCCACAGATTGA-TGTGCGGAAGGCAGTGATCCAGTGTAAAGAGGAATCACGGTGCTCA 179
                      *     ******* *  **  * * ** *  *  *    ***  ***   *  **  *  

consensus_5805#0      AGA-GCTCACATGC-ACAAAAGTGCT-----TTCGTAAGCT--TAATCA--TTAAGCATG 170
consensus_5805#1      AAATGCTGCCATCCTGCAGATATGCCGATCATTCCTGAGCAGGCAATGGAGTTCCTCTCT 239
                      * * ***  *** *  ** *  ***      *** * ***    ***    **   *   

consensus_5805#0      GAGATATTTTATGTTTTGTTTTTA---TGCACACAGACCCTTAGAACATCATCTGAACAC 227
consensus_5805#1      CGAACATGGAGCCCCTCATCATCAGATTTCTTCCAAACCCTTAGAACATCATCTGAACAC 299
                         * **        *  *  * *   * *   ** ************************

consensus_5805#0      CGTCAGCCGGAGAAGGCAATCAAAGACGAAGAGGGAAATGAAGAAAAAGATGAAGAGAGA 287
consensus_5805#1      CGTCAGCCGGAGAAGGCAATCAAAGACGAAGAGGGAAATGAAGAAAAAGATGAAGAGAGA 359
                      ************************************************************

consensus_5805#0      CATCTGTCCACGGTCAATTTCAGTGGAGGCAAAAGCCAATTCTTCAACCAGACATGGCAA 347
consensus_5805#1      CATCTGTCCACGGTCAATTTCAGTGGAGGCAAAAGCCAATTCTTCAACCAGACATGGCAA 419
                      ************************************************************

consensus_5805#0      CTCAACGCTGGCTACATGAAAGCAATTCTTCGAGGTCATTTCTTGAGTGCTGTTTCGGTC 407
consensus_5805#1      CTCAACGCTGGCTACATGAAAGCAATTCTTCGAGGTCATTTCTTGAGTGCTGTTTCGGTC 479
                      ************************************************************

consensus_5805#0      ACTGGACGCCAGCGAAAGAAGAGGAAAGAAGAGCTCAGGCTGCACGCAGCACAGGCCCGC 467
consensus_5805#1      ACTGGACGCCAGCGAAAGAAGAGGAAAGAAGAGCTCAGGCTGCACGCAGCACAGGCCCGC 539
                      ************************************************************

consensus_5805#0      GCGGCTGTCTCGGTTGCTCAGCTCGCCGCAGCAATCGCAGGCATTCGTGTCGGTGTGCGA 527
consensus_5805#1      GCGGCTGTCTCGGTTGCTCAGCTCGCCGCAGCAATCGCAGGCATTCGTGTCGGTGTGCGA 599
                      ************************************************************

consensus_5805#0      ACTGAGGCC-GGACAACCTGAAGTATGTCGAGGCTGCTGACAGCAAGAAGATGGGCACAG 586
consensus_5805#1      ACTGAGGCCCGGACAACCTGAAGTATGTC------------------------------- 628
                      ********* *******************                               

consensus_5805#0      TGCTTGCTTCCGCTGCTGCGCTGGTGGCCACCGTCTGCGCAGAGGCTGCAGAGCTCGCTG 646
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      GGACCAACAGGTCCGGCGTGACTTCCGCCGTGAAAACTGGAGTCGAGAGCTGCTCCTCTG 706
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      CTGAACTGCTCACCCTCACGGCCACTGCTGCTACATGTCTGAGAGGAGCTGCAGCACTGA 766
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      AACTGAGGGCAGACGTCAGGGGAATCGGTAGCAACAACAACTCAGTTGGCACCAGCACTA 826
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      CTAGCATCCACAAAGACACAACTCTCAGGGTTAGGCTGCCTTGTGGGAGCGTGCGACTGA 886
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      GGAAGGTGGCTGTCTTTCCACAGTGCGACAGAGTAGTACTGAGGCTGGGGAAGAAACATC 946
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      TGCACGGGGCATTCTCAACCTACAAAAATTATGAGGTGCTTGACGTCTCCAGCAACGGCG 1006
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      GCGATGTGGTGGTGGACGGCATGGTGTTGTTCCCGCTGGTGCTCAGAACGGCCGCTGGTG 1066
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      TGGTACAGCTGCTGTTGGACAGTCAGATGCACTGCAAGGTCTGGAAGAATGCCATCGAGG 1126
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      GCATTCTGTCCGACCAAAACGTCAAACACGCTAAACTCTGAGCCGTCGTCGTCAGGCACA 1186
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      CGTATACGTACATGTTTAGCTGCAGCTATACACTTCACTGTGTGAGTTTGCTTCTATATG 1246
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      AACCTTTTAATAATTAGCTGTAGCTCTTAGCAAAATCCGAAATGTTTCATTCTATTATAA 1306
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      AAAAAAATTATGTACACTTCACATGATATACAGAGGTGTAGTATACTACTATATTGCACT 1366
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      ACAGGTCTTGGGTTGCATTGTGTACTCAATGTACGCCAGTCGCCAGTTGTTGAGGTTTAG 1426
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      TTCTGTAATATAGGTTGCATGGGCTGTTTTTTTTTTTCCATTCTTCGGTCCTAACCTCAC 1486
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      CTACTTTGTACACCAACATGCTTTTGAGAAAATTATGGATGATTGGATGTTATAAAAAAA 1546
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      AAAAAAAAGA 1556
consensus_5805#1      ----------
                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)