These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1556 fasta sequence [CTAAATTGTAGAGTTACTCTATTATTATCTCCATATCTTTCTATGTATCGTTGGTTAGTTTGAAAATCGAGATTGAATTAGCCAACGTCATTTTTTTAAAAAAAAATGGAGGGAGTATTTTAGAGCTCACATGCACAAAAGTGCTTTCGTAAGCTTAATCATTAAGCATGGAGATATTTTATGTTTTGTTTTTATGCACACAGACCCTTAGAACATCATCTGAACACCGTCAGCCGGAGAAGGCAATCAAAGACGAAGAGGGAAATGAAGAAAAAGATGAAGAGAGACATCTGTCCACGGTCAATTTCAGTGGAGGCAAAAGCCAATTCTTCAACCAGACATGGCAACTCAACGCTGGCTACATGAAAGCAATTCTTCGAGGTCATTTCTTGAGTGCTGTTTCGGTCACTGGACGCCAGCGAAAGAAGAGGAAAGAAGAGCTCAGGCTGCACGCAGCACAGGCCCGCGCGGCTGTCTCGGTTGCTCAGCTCGCCGCAGCAATCGCAGGCATTCGTGTCGGTGTGCGAACTGAGGCCGGACAACCTGAAGTATGTCGAGGCTGCTGACAGCAAGAAGATGGGCACAGTGCTTGCTTCCGCTGCTGCGCTGGTGGCCACCGTCTGCGCAGAGGCTGCAGAGCTCGCTGGGACCAACAGGTCCGGCGTGACTTCCGCCGTGAAAACTGGAGTCGAGAGCTGCTCCTCTGCTGAACTGCTCACCCTCACGGCCACTGCTGCTACATGTCTGAGAGGAGCTGCAGCACTGAAACTGAGGGCAGACGTCAGGGGAATCGGTAGCAACAACAACTCAGTTGGCACCAGCACTACTAGCATCCACAAAGACACAACTCTCAGGGTTAGGCTGCCTTGTGGGAGCGTGCGACTGAGGAAGGTGGCTGTCTTTCCACAGTGCGACAGAGTAGTACTGAGGCTGGGGAAGAAACATCTGCACGGGGCATTCTCAACCTACAAAAATTATGAGGTGCTTGACGTCTCCAGCAACGGCGGCGATGTGGTGGTGGACGGCATGGTGTTGTTCCCGCTGGTGCTCAGAACGGCCGCTGGTGTGGTACAGCTGCTGTTGGACAGTCAGATGCACTGCAAGGTCTGGAAGAATGCCATCGAGGGCATTCTGTCCGACCAAAACGTCAAACACGCTAAACTCTGAGCCGTCGTCGTCAGGCACACGTATACGTACATGTTTAGCTGCAGCTATACACTTCACTGTGTGAGTTTGCTTCTATATGAACCTTTTAATAATTAGCTGTAGCTCTTAGCAAAATCCGAAATGTTTCATTCTATTATAAAAAAAAATTATGTACACTTCACATGATATACAGAGGTGTAGTATACTACTATATTGCACTACAGGTCTTGGGTTGCATTGTGTACTCAATGTACGCCAGTCGCCAGTTGTTGAGGTTTAGTTCTGTAATATAGGTTGCATGGGCTG--TTTTTTTTTTTCCATTCTTCGGTCCTAACCTCACCTACTTTGTACACCAACATGCTTTTGAGAAAATTATGGATGATTGGATGTTATAAAAAAAAAAAAAAAGA] [+] EMBL AK111422 [CTAAATTGTAGAGTTACTCTATTATTATCTCCATATCTTTCTATGTATCGTTGGTTAGTTTGAAAATCGAGATTGAATTAGCCAACGTCATTTTTTTAAAAAAAAATGGAGGGAGTATTTTAGAGCTCACATGCACAAAAGTGCTTTCGTAAGCTTAATCATTAAGCATGGAGATATTTTATGTTTTGTTTTTATGCACACAGACCCTTAGAACATCATCTGAACACCGTCAGCCGGAGAAGGCAATCAAAGACGAAGAGGGAAATGAAGAAAAAGATGAAGAGAGACATCTGTCCACGGTCAATTTCAGTGGAGGCAAAAGCCAATTCTTCAACCAGACATGGCAACTCAACGCTGGCTACATGAAAGCAATTCTTCGAGGTCATTTCTTGAGTGCTGTTTCGGTCACTGGACGCCAGCGAAAGAAGAGGAAAGAAGAGCTCAGGCTGCACGCAGCACAGGCCCGCGCGGCTGTCTCGGTTGCTCAGCTCGCCGCAGCAATCGCAGGCATTCGTGTCGGTGTGCGAACTGAGGCCGGACAACCTGAAGTATGTCGAGGCTGCTGACAGCAAGAAGATGGGCACAGTGCTTGCTTCCGCTGCTGCGCTGGTGGCCACCGTCTGCGCAGAGGCTGCAGAGCTCGCTGGGACCAACAGGTCCGGCGTGACTTCCGCCGTGAAAACTGGAGTCGAGAGCTGCTCCTCTGCTGAACTGCTCACCCTCACGGCCACTGCTGCTACATGTCTGAGAGGAGCTGCAGCACTGAAACTGAGGGCAGACGTCAGGGGAATCGGTAGCAACAACAACTCAGTTGGCACCAGCACTACTAGCATCCACAAAGACACAACTCTCAGGGTTAGGCTGCCTTGTGGGAGCGTGCGACTGAGGAAGGTGGCTGTCTTTCCACAGTGCGACAGAGTAGTACTGAGGCTGGGGAAGAAACATCTGCACGGGGCATTCTCAACCTACAAAAATTATGAGGTGCTTGACGTCTCCAGCAACGGCGGCGATGTGGTGGTGGACGGCATGGTGTTGTTCCCGCTGGTGCTCAGAACGGCCGCTGGTGTGGTACAGCTGCTGTTGGACAGTCAGATGCACTGCAAGGTCTGGAAGAATGCCATCGAGGGCATTCTGTCCGACCAAAACGTCAAACACGCTAAACTCTGAGCCGTCGTCGTCAGGCACACGTATACGTACATGTTTAGCTGCAGCTATACACTTCACTGTGTGAGTTTGCTTCTATATGAACCTTTTAATAATTAGCTGTAGCTCTTAGCAAAATCCGAAATGTTTCATTCTATTATAAAAAAAAATTATGTACACTTCACATGATATACAGAGGTGTAGTATACTACTATATTGCACTACAGGTCTTGGGTTGCATTGTGTACTCAATGTACGCCAGTCGCCAGTTGTTGAGGTTTAGTTCTGTAATATAGGTTGCATGGGCTG TTTTTTTTTTTCCATTCTTCGGTCCTAACCTCACCTACTTTGTACACCAACATGCTTTTGAGAAAATTATGGATGAT ] [-] EMBL CB645726 [ CAACTCAGTTGGCACCAGCACTACTAGCATCCACAAAGACACAACTCTCAGGGTTAGGCTGCCTTGTGGGAGCGTGCGACTGAGGAAGGTGGCTGTCTTTCCACAGTGCGACAGAGTAGTACTGAGGCTGGGGAAGAAACATTTGCACGGGGCATTCTCAACCTACAAAAATTATGAGGTGCTTGACGTCTCCAGCAACGGCGGCGATGTGGTGGTGGACGGCATGGTGTTGTTCCCGCTGGTGCTCAGAACGGCCGCTGGTGTGGTACAGCTGCTGTTGGACAGTCAGATGCACTGCAAGGTTTGGAAGAATGCCATCGAGGGCATTCTGTCCGACCAAAACGTCAAACACGCTAAACTTTGAGCCGTCGTTGTCAGGCACACGTATACGTACATGTTTAGCTGCAGCTATACACTTCACTGTGTGAGTTTGCTTTTATATGAACCTTTTAATAATTAGCTGTAGCTTTTAGCAAAATCCGAAATGTTTCATTTTATTATAAAAAAAAATTATGTACACTTCACATGATATACAGAGGTGTAGTATACTACTATATTGCACTACAGGTCTTGGGTTGCATTGTGTACTCAATGTACGCCAGTCGCCAGTTGTTGAGGTTTAGTTCTGTAATATAGGTTGCATGGGCTGTTTTTTTTTTTTTCCATTCTTCGGTCCTAACCTCACCTACTTTGTACACCAACATGCTTTTGAGAAAATTATGGATGATTGGATGTTATAAAAAAAAAAAAAAAGA] consensusID : consensus_5805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [TATATCCCTCTCAACGTAACCTGATTAAGTTGGTGGTTATGGAGCATTTCACAAGAGGAGTGGTGCTCGGGATGCCTTCCCTCCAAAGATGCCATTCACTGTCATGTCAAATGGCAGAGCGCCCACAGATTGATGTGCGGAAGGCAGTGATCCAGTGTAAAGAGGAATCACGGTGCTCAAAATGCTGCCATCCTGCAGATATGCCGATCATTCCTGAGCAGGCAATGGAGTTCCTCTCTCGAACATGGAGCCCCTCATCATCAGATTTCTTCCAAACCCTTAGAACATCATCTGAACACCGTCAGCCGGAGAAGGCAATCAAAGACGAAGAGGGAAATGAAGAAAAAGATGAAGAGAGACATCTGTCCACGGTCAATTTCAGTGGAGGCAAAAGCCAATTCTTCAACCAGACATGGCAACTCAACGCTGGCTACATGAAAGCAATTCTTCGAGGTCATTTCTTGAGTGCTGTTTCGGTCACTGGACGCCAGCGAAAGAAGAGGAAAGAAGAGCTCAGGCTGCACGCAGCACAGGCCCGCGCGGCTGTCTCGGTTGCTCAGCTCGCCGCAGCAATCGCAGGCATTCGTGTCGGTGTGCGAACTGAGGCCCGGACAACCTGAAGTATGTC] [+] EMBL CB645725 [TATATCCCTCTCAACGTAACCTGATTAAGTTGGTGGTTATGGAGCATTTCACAAGAGGAGTGGTGCTCGGGATGCCTTCCCTCCAAAGATGCCATTCACTGTCATGTCAAATGGCAGAGCGCCCACAGATTGATGTGCGGAAGGCAGTGATCCAGTGTAAAGAGGAATCACGGTGCTCAAAATGCTGCCATCCTGCAGATATGCCGATCATTCCTGAGCAGGCAATGGAGTTCCTCTCTCGAACATGGAGCCCCTCATCATCAGATTTCTTCCAAACCCTTAGAACATCATCTGAACACCGTCAGCCGGAGAAGGCAATCAAAGACGAAGAGGGAAATGAAGAAAAAGATGAAGAGAGACATCTGTCCACGGTCAATTTCAGTGGAGGCAAAAGCCAATTCTTCAACCAGACATGGCAACTCAACGCTGGCTACATGAAAGCAATTCTTCGAGGTCATTTCTTGAGTGCTGTTTCGGTCACTGGACGCCAGCGAAAGAAGAGGAAAGAAGAGCTCAGGCTGCACGCAGCACAGGCCCGCGCGGCTGTCTCGGTTGCTCAGCTCGCCGCAGCAATCGCAGGCATTCGTGTCGGTGTGCGAACTGAGGCCCGGACAACCTGAAGTATGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5805#0 -------------------------------------------------CTAAATTGTAG 11 consensus_5805#1 TATATCCCTCTCAACGTAACCTGATTAAGTTGGTGGTTATGGAGCATTTCACAAGAGGAG 60 * ** * ** consensus_5805#0 AGTTACTCT--ATTATTATCTCCATATCTTTCTATGTATCGTTG-GTTAGTTTGAAAATC 68 consensus_5805#1 TGGTGCTCGGGATGCCTTCCCTCCAAAGATGCCATTCACTGTCATGTCAAATGGCAGAGC 120 * * *** ** * * * * * * ** * ** ** * * * * * * consensus_5805#0 G-----AGATTGAATTAGCCAACGTCATTTTTTTAAAAAAAAATGGAGGGA--GTATTTT 121 consensus_5805#1 GCCCACAGATTGA-TGTGCGGAAGGCAGTGATCCAGTGTAAAGAGGAATCACGGTGCTCA 179 * ******* * ** * * ** * * * *** *** * ** * consensus_5805#0 AGA-GCTCACATGC-ACAAAAGTGCT-----TTCGTAAGCT--TAATCA--TTAAGCATG 170 consensus_5805#1 AAATGCTGCCATCCTGCAGATATGCCGATCATTCCTGAGCAGGCAATGGAGTTCCTCTCT 239 * * *** *** * ** * *** *** * *** *** ** * consensus_5805#0 GAGATATTTTATGTTTTGTTTTTA---TGCACACAGACCCTTAGAACATCATCTGAACAC 227 consensus_5805#1 CGAACATGGAGCCCCTCATCATCAGATTTCTTCCAAACCCTTAGAACATCATCTGAACAC 299 * ** * * * * * * ** ************************ consensus_5805#0 CGTCAGCCGGAGAAGGCAATCAAAGACGAAGAGGGAAATGAAGAAAAAGATGAAGAGAGA 287 consensus_5805#1 CGTCAGCCGGAGAAGGCAATCAAAGACGAAGAGGGAAATGAAGAAAAAGATGAAGAGAGA 359 ************************************************************ consensus_5805#0 CATCTGTCCACGGTCAATTTCAGTGGAGGCAAAAGCCAATTCTTCAACCAGACATGGCAA 347 consensus_5805#1 CATCTGTCCACGGTCAATTTCAGTGGAGGCAAAAGCCAATTCTTCAACCAGACATGGCAA 419 ************************************************************ consensus_5805#0 CTCAACGCTGGCTACATGAAAGCAATTCTTCGAGGTCATTTCTTGAGTGCTGTTTCGGTC 407 consensus_5805#1 CTCAACGCTGGCTACATGAAAGCAATTCTTCGAGGTCATTTCTTGAGTGCTGTTTCGGTC 479 ************************************************************ consensus_5805#0 ACTGGACGCCAGCGAAAGAAGAGGAAAGAAGAGCTCAGGCTGCACGCAGCACAGGCCCGC 467 consensus_5805#1 ACTGGACGCCAGCGAAAGAAGAGGAAAGAAGAGCTCAGGCTGCACGCAGCACAGGCCCGC 539 ************************************************************ consensus_5805#0 GCGGCTGTCTCGGTTGCTCAGCTCGCCGCAGCAATCGCAGGCATTCGTGTCGGTGTGCGA 527 consensus_5805#1 GCGGCTGTCTCGGTTGCTCAGCTCGCCGCAGCAATCGCAGGCATTCGTGTCGGTGTGCGA 599 ************************************************************ consensus_5805#0 ACTGAGGCC-GGACAACCTGAAGTATGTCGAGGCTGCTGACAGCAAGAAGATGGGCACAG 586 consensus_5805#1 ACTGAGGCCCGGACAACCTGAAGTATGTC------------------------------- 628 ********* ******************* consensus_5805#0 TGCTTGCTTCCGCTGCTGCGCTGGTGGCCACCGTCTGCGCAGAGGCTGCAGAGCTCGCTG 646 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 GGACCAACAGGTCCGGCGTGACTTCCGCCGTGAAAACTGGAGTCGAGAGCTGCTCCTCTG 706 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 CTGAACTGCTCACCCTCACGGCCACTGCTGCTACATGTCTGAGAGGAGCTGCAGCACTGA 766 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 AACTGAGGGCAGACGTCAGGGGAATCGGTAGCAACAACAACTCAGTTGGCACCAGCACTA 826 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 CTAGCATCCACAAAGACACAACTCTCAGGGTTAGGCTGCCTTGTGGGAGCGTGCGACTGA 886 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 GGAAGGTGGCTGTCTTTCCACAGTGCGACAGAGTAGTACTGAGGCTGGGGAAGAAACATC 946 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 TGCACGGGGCATTCTCAACCTACAAAAATTATGAGGTGCTTGACGTCTCCAGCAACGGCG 1006 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 GCGATGTGGTGGTGGACGGCATGGTGTTGTTCCCGCTGGTGCTCAGAACGGCCGCTGGTG 1066 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 TGGTACAGCTGCTGTTGGACAGTCAGATGCACTGCAAGGTCTGGAAGAATGCCATCGAGG 1126 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 GCATTCTGTCCGACCAAAACGTCAAACACGCTAAACTCTGAGCCGTCGTCGTCAGGCACA 1186 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 CGTATACGTACATGTTTAGCTGCAGCTATACACTTCACTGTGTGAGTTTGCTTCTATATG 1246 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 AACCTTTTAATAATTAGCTGTAGCTCTTAGCAAAATCCGAAATGTTTCATTCTATTATAA 1306 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 AAAAAAATTATGTACACTTCACATGATATACAGAGGTGTAGTATACTACTATATTGCACT 1366 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 ACAGGTCTTGGGTTGCATTGTGTACTCAATGTACGCCAGTCGCCAGTTGTTGAGGTTTAG 1426 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 TTCTGTAATATAGGTTGCATGGGCTGTTTTTTTTTTTCCATTCTTCGGTCCTAACCTCAC 1486 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 CTACTTTGTACACCAACATGCTTTTGAGAAAATTATGGATGATTGGATGTTATAAAAAAA 1546 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 AAAAAAAAGA 1556 consensus_5805#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||