These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5810#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGCAAGAACAGCGCTGACGGCGAGTACGAGATGAAGCGGCCGGGAAGCTCGACGGCGCCGGCGCATTCAGCGTGCCGCTCGCCGCCGACCTCCGCGGCGCCGACAGCGTGGCTCAGCTCCACAGCGCGGCGAAACATAACGCGGCATGCCCCGGTCAGGAGCCGTCGAGGATCATGCAGCTGTCGGAGAGAACCTTCGTTGCCGTCGCCGGCAAGACCCACTGCACGTCGCCGGTGTGCGCGTCGGCGACCATCTGCAAGCCCATCTGCCAGCCGCGTCGTCGACCAAGCCGGCGCCCAAGCCGCACCCTGGCCAGCCGCCGCACCCAACGCCGATGCTGACGCCGTCGTACGGAACGCCGAGCCCGTACCACTCGCCGGCGAGGAACTAATTAATTAATGCCGTCGAGCTCACACATTATTATGATTTTTTTTCTGCTCTGCACTAGCTTAATGCCATTTATGATTTATTGTTGTCAAGGTTGGAGTAGCGCAGATAGCTTATGTATTCGTTGATCTTGAGTTTCTTGGGTCGATCGAATAAAGTT] [+] EMBL AK060275 [AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGCAAGAACAGCGCTGACGGCGAGTACGAGATGAAGCGGCCGGGAAGCTCGACGGCGCCGGCGCATTCAGCGTGCCGCTCGCCGCCGACCTCCGCGGCGCCGACAGCGTGGCTCAGCTCCACAGCGCGGCGAAACATAACGCGGCATGCCCCGGTCAGGAGCCGTCGAGGATCATGCAGCTGTCGGAGAGAACCTTCGTTGCCGTCGCCGGCAAGACCCACTGCACGTCGCCGGTGTGCGCGTCGGCGACCATCTGCAAGCCCATCTGCCAGCCGCGTCGTCGACCAAGCCGGCGCCCAAGCCGCACCCTGGCCAGCCGCCGCACCCAACGCCGATGCTGACGCCGTCGTACGGAACGCCGAGCCCGTACCACTCGCCGGCGAGGAACTAATTAATTAATGCCGTCGAGCTCACACATTATTATGATTTTTTTTCTGCTCTGCACTAGCTTAATGCCATTTATGATTTATTGTTGTCAAGGTTGGAGTAGCGCAGATAGCTTATGTATTCGTTGATCTTGAGTTTCTTGGGTCGATCGAATAAAGTT] consensusID : consensus_5810#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 564 fasta sequence [GGGCCAGGAGCCCGTCCGAAGGTTCCATCCACTGTCGGAGCGCACCTTCGTCGCCGTCGCCGGCAGAGACCCTCTATGTGTCCCGGTGTGCGCGTCGGCGACCATCTGCGAGCCCATCAAGAAGCACTTCTTCGACCACTTCCACCACAACAAGCCGGCGCCCGCCGCACCGTCGACCAAGCCAGCGCCCAAGCCGCACCCCGACCAGCCGCCGCACCCTAAGCCGACGCCGACGTACGGAACACCGAGCCCGTACCACCCGCCGGCGAGGAACTAATTGAGCCGTCGATCGAGCTCACACATTATTATGATTCTTTTTAAATTTCTGCTCTGCGTTAGCTTAATGCCATTATGATATATTGTTGTCAAGGTTGGAGTAGCGCAGACAGCTTTGTGTTAGTTGATTTTGAGTTTCTTGGGTCGATCGAATAAGGTTTCAGGTTGATTTGTGAGGTTTGAGTCAATACAGGTGTGTTAGTATCAGGTAGATTTGTCTCAGGATTCGTTTGCTTGTTTGTTGGAATTAATTTAATTAATATGATATTTATTTGTGTAAAAAAAAAA] [+] EMBL BI805240 [GGGCCAGGAGCCCGTCCGAAGGTTCCATCCACTGTCGGAGCGCACCTTCGTCGCCGTCGCCGGCAGAGACCCTCTATGTGTCCCGGTGTGCGCGTCGGCGACCATCTGCGAGCCCATCAAGAAGCACTTCTTCGACCACTTCCACCACAACAAGCCGGCGCCCGCCGCACCGTCGACCAAGCCAGCGCCCAAGCCGCACCCCGACCAGCCGCCGCACCCTAAGCCGACGCCGACGTACGGAACACCGAGCCCGTACCACCCGCCGGCGAGGAACTAATTGAGCCGTCGATCGAGCTCACACATTATTATGATTCTTTTTAAATTTCTGCTCTGCGTTAGCTTAATGCCATTATGATATATTGTTGTCAAGGTTGGAGTAGCGCAGACAGCTTTGTGTTAGTTGATTTTGAGTTTCTTGGGTCGATCGAATAAGGTTTCAGGTTGATTTGTGAGGTTTGAGTCAATACAGGTGTGTTAGTATCAGGTAGATTTGTCTCAGGATTCGTTTGCTTGTTTGTTGGAATTAATTTAATTAATATGATATTTATTTGTGTAAAAA ] [+] EMBL AU097260 [ GCTCTGCGTTAGCTTAATGCCATTATGATATATTGTTGTCAAGGTTGGAGTAGCGCAGACAGCTTTGTGTTAGTTGATTTTGAGTTTCTTGGGTCGATCGAATAAGGTTTCAGGTTGATTTGTGAGGTTTGAGTCAATACAG GTGTTAGTATCAGGTAGATTTGTCTCAGGATTCGTTTGCTTGTTTGTTGGAATTAATTTAATTAATATGATATTTATTTGTGTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5810#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGCAAGAACAGCGCTGACGGCG 60 consensus_5810#1 ------------------------------------------------------------ consensus_5810#0 AGTACGAGATGAAGCGGCCGGGAAGCTCGACGGCGCCGGCGCATTCAGCGTGCCGCTCGC 120 consensus_5810#1 ------------------------------------------------------------ consensus_5810#0 CGCCGACCTCCGCGGCGCCGACAGCGTGGCTCA--GCTCCACAGCGCGGCGAAACATAAC 178 consensus_5810#1 --------------GGGCCAGGAGCCCGTCCGAAGGTTCCATCCACTGTCGGAGCGCACC 46 * *** *** * * * * **** * ** * * * * consensus_5810#0 GCGGCATGCCCCGGTCAGGAGCCGTCGAGGATCATGCAGCTGTCGGAGAGAACCTTCGTT 238 consensus_5810#1 ----TTCGTCGCCGTC----GCCGGCAGAGACCCTCTATGTGTCCCGGTGTGCG--CGTC 96 * * * *** **** * ** * * * **** * * * *** consensus_5810#0 GCCG-TCGCCGGCAAGACCCACTGCACGTCGCCGGTGTGCGCGTCGGCGACCATCTGCAA 297 consensus_5810#1 GGCGACCATCTGCGAG-CCCATCAAGAAGCACTTCTTCGACCACTT-CCACCA-CAACAA 153 * ** * * ** ** **** * * * * * * **** * *** consensus_5810#0 GCCCATCTGCCAGCCGCGTCGTCGACCAAGCCGGCGCCCAAGCCGCACCCTGGCCAGCCG 357 consensus_5810#1 GCCGGC--GCCCGCCGCACCGTCGACCAAGCCAGCGCCCAAGCCGCACCCCGACCAGCCG 211 *** *** ***** ************* ***************** * ******* consensus_5810#0 CCGCACCCAACGCCGATGCTGACGCCGTCGTACGGAACGCCGAGCCCGTACCACTCGCCG 417 consensus_5810#1 CCGCACCCTAAGCCGA------CGCCGACGTACGGAACACCGAGCCCGTACCACCCGCCG 265 ******** * ***** ***** ********** *************** ***** consensus_5810#0 GCGAGGAACTAATTAATTAATGCCGTCGAGCTCACACATTATTATGATTTTTTTT----- 472 consensus_5810#1 GCGAGGAACTAATTGAGCCGT-CGATCGAGCTCACACATTATTATGATTCTTTTTAAATT 324 ************** * * * ************************ ***** consensus_5810#0 -CTGCTCTGCACTAGCTTAATGCCATTTATGATTTATTGTTGTCAAGGTTGGAGTAGCGC 531 consensus_5810#1 TCTGCTCTGCGTTAGCTTAATGCCATT-ATGATATATTGTTGTCAAGGTTGGAGTAGCGC 383 ********* *************** ***** ************************** consensus_5810#0 AGATAGCTTATGTATTCGTTGATCTTGAGTTTCTTGGGTCGATCGAATAAAGTT------ 585 consensus_5810#1 AGACAGCTT-TGTGTTAGTTGATTTTGAGTTTCTTGGGTCGATCGAATAAGGTTTCAGGT 442 *** ***** *** ** ****** ************************** *** consensus_5810#0 ------------------------------------------------------------ consensus_5810#1 TGATTTGTGAGGTTTGAGTCAATACAGGTGTGTTAGTATCAGGTAGATTTGTCTCAGGAT 502 consensus_5810#0 ------------------------------------------------------------ consensus_5810#1 TCGTTTGCTTGTTTGTTGGAATTAATTTAATTAATATGATATTTATTTGTGTAAAAAAAA 562 consensus_5810#0 -- consensus_5810#1 AA 564 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||