These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5817#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1181 fasta sequence [GATGATGGAGGAAGGAGAGAAGCAGAGCAGCGGGGGGCGGTGGCGGTGTAGGTGGCTCGTCGACGTCGGCCGGTGGCGCCCCTCCCCCGCCGAGTTCCAAGCCGCCGCCGCCGTCCTCCCGCCGCACGACCGCCCCGCCATCCACAGGTTCGTCAGAGAAGAAGACAGGAAACGAGCGCTCGTCAGCCGCCTGCTCAAGTACTCGCTCGTGCACCATGCCCTTGGAATGCCATTCCACCAAATTCGCATCAACCGCACGCTTGAAGGGAAGCCCTATCTGAATAAAAATGTCAACCTTCCTGGCTTCAACTTCAACACGTCGCATCAGGGGGAGTACGTTGGCATAGCATCTGAGCCTCTCTGCCTCGTTGGCCTGGACATTGTGTGCATCTCCAAGCCCCAACGAGAAACTGCCCTGGAGTTCATCAACAATTTCACTTCCTATCTCACAGATCATGAGTGGAACTGCATTGTTACTGCAGACAGTCATGATGGTATGCTAACTGAGTTCTACAGGTATTGGTGTCTTAAAGAAGCATTTGTCAAAGCTACAGGTGCTGGCGTTGGATTCGGGCTGCAACGTTTGGAATTCCACCATATGAATTGGACTAATATTTCTCTCTGTATTGATGGAGAAGAGGCTAGGAAATGGATGTTTTGGCTTTTCAAGATTGATGAAATGCATTTGGCATCCATTGCGAAAGGGCATCCAGAGGATGCTATTGACAGCTTCAGGAGAACATTATCTGATGTGGTTATTCAGGAGGGAGAATTGCATACGGCAATAGAAATTCCAGAAGAAGCTTTCACTCTATTGACAGTGGAACACCTTATACAGTTACATGATTAAATGGTCTTCTTGAATTTTGCGGTGACATACTAATGCAGGACTAAAATCAACAAATTGTGAGTGTATCCTGAAAGTTAAAATACATACATAGCACACCAAAATTAGGAAAAGTATCCTTGTATTTGCTCTCGGTGCTTCTGCAGAAATGAGAGCTTAAGATGTTAGGGCCTG-TTTTTTCTTTCATAACAGAGGAGACGCTTGATATTGTAAGCTTTGACTAGTTTGGTAGTGTTTGCAAAGGCCCATTTTTTTAGGCAATTGTAAAGGCAGATTGATGATTGTTCACTGGAAAAATCTAATCAAAAAAACTATTAGCAGCCAAAAAAAAAGA] [+] EMBL AK071502 [GATGATGGAGGAAGGAGAGAAGCAGAGCAGCGGGGGGCGGTGGCGGTGTAGGTGGCTCGTCGACGTCGGCCGGTGGCGCCCCTCCCCCGCCGAGTTCCAAGCCGCCGCCGCCGTCCTCCCGCCGCACGACCGCCCCGCCATCCACAGGTTCGTCAGAGAAGAAGACAGGAAACGAGCGCTCGTCAGCCGCCTGCTCAAGTACTCGCTCGTGCACCATGCCCTTGGAATGCCATTCCACCAAATTCGCATCAACCGCACGCTTGAAGGGAAGCCCTATCTGAATAAAAATGTCAACCTTCCTGGCTTCAACTTCAACACGTCGCATCAGGGGGAGTACGTTGGCATAGCATCTGAGCCTCTCTGCCTCGTTGGCCTGGACATTGTGTGCATCTCCAAGCCCCAACGAGAAACTGCCCTGGAGTTCATCAACAATTTCACTTCCTATCTCACAGATCATGAGTGGAACTGCATTGTTACTGCAGACAGTCATGATGGTATGCTAACTGAGTTCTACAGGTATTGGTGTCTTAAAGAAGCATTTGTCAAAGCTACAGGTGCTGGCGTTGGATTCGGGCTGCAACGTTTGGAATTCCACCATATGAATTGGACTAATATTTCTCTCTGTATTGATGGAGAAGAGGCTAGGAAATGGATGTTTTGGCTTTTCAAGATTGATGAAATGCATTTGGCATCCATTGCGAAAGGGCATCCAGAGGATGCTATTGACAGCTTCAGGAGAACATTATCTGATGTGGTTATTCAGGAGGGAGAATTGCATACGGCAATAGAAATTCCAGAAGAAGCTTTCACTCTATTGACAGTGGAACACCTTATACAGTTACATGATTAAATGGTCTTCTTGAATTTTGCGGTGACATACTAATGCAGGACTAAAATCAACAAATTGTGAGTGTATCCTGAAAGTTAAAATACATACATAGCACACCAAAATTAGGAAAAGTATCCTTGTATTTGCTCTCGGTGCTTCTGCAGAAATGAGAGCTTAAGATGTTAGGGCCTG TTTTTTCTTTCATAACAGAGGAGACGCTTGATATTGTAAGCTTTGACTAGTTTGGTAGTGTTTGCAAAGGC ] [-] EMBL CB658051 [ GCATCTCCAAGCCTCAACGAGAAACTGCCCTGGAGTTCATCAACAATTTCACTTCCTATCTCACTGATCATGAGTGGAACTGCATTGTTACTGCAGGCAGCCATGATGGTATGCTAACTGAGTTCTACAGGTATTGGTGTCTTAAAGAAGCATTTGTCAAAGCTACAGGTGCTGGCGTTGGATTTGGGTTGCAACGTTTGGAATTCCACCATATGAATTGGACTAATATTTCTCTCCGTATTGATGGAGAAGAGGATAGGAAATGGAGGTTTTGGCTTTTCAAGATTGATGAAAAGCATTTGGCATCCATTGCGAAAGGGCATCCAGAGGATGCTATTGACAGCTTCAGGAGAACATTATCTGATGTGGTTATTCAGGAGGGAGAATTGCATACGGCAATAGAAATTCCAGAAGAAGCTTTCACTCTATTGACAGTGGAACAACTTATACAGTTACATGATTAAATGGTCTTCTTGAATTTTGCGGTGACATATTAATGCAGGACTAAAATCAACAAATTGTGAGTGTATCCTGAAAGTTAAAATATATACATAGCACACCAAAATTAGGAAAAGTATCCTTGTATTTGCTCTCGGTGCTTCTGCAGAAATGAGAGCTT AGGGGTTAGGGCCTGTTTTTTTTTTTCATAACAGAGAAGACACTTGATATTGTAAGCTTTGACTAGTTTGGTAGTGTTTGCAAAGGCCCATTTTTTTAGGCAATTGTAAAGGCAGATTGATGATTGTTCACTGGAAAAATCTAATCAAAAAAACTATTAGCAGCCAAAAAAAAAGA] consensusID : consensus_5817#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 757 fasta sequence [AGCGTGGGGAGGTGGCGGTGTAGGTGGCTCGTCGACGTCGGCCGGTGGCGCCCCTCCCCCGCTGAGTTCCAAGCCGCCGCCGCCCTCCTCCCGCCGCACGACCGCCCCGCCATCCACAGGTTTTTCCAACCAATTCCTCTTCCCCCACATTGATTCCACCCACTCACTACTGAAATTCAATTCAGCCTCTAGATTTTTCTCCTCCTCCTCACGAGTCACGACCTCACCGCTGCAGGTTCGTCAGAGAAGATGACAGGAAACGGGCGCTCGTCAGTCGCCTTCTCCAATACTCGCTCGTGCACCATGCTCTTGGAATCCCATTCCACCAAATTCGCATCAACCGCACGCTTGAAGGGAAGCCCTACCTGAATAAAAATGCCAACTTTCCTGGCTTCAACTTCAACACGTCGCATCAGGGGGAGTACGTTGGCATAGCATCTGAGCCTCTCTGCCTCGTTGGCCTGGACATTGTGTGCATCTCCAAGCCTCAACGAGAAACTGCCCTGGAGTTCATCAACAATTTCACTTCCTATCTCACTGATCATGAGTGGAACTGCATTGTTACTGCAGGCAGCCATGATGGTATGCTAACTGAGTTCTACAGGTATTGGTGTCTTAAAGAAGCATTTGTCAAAGCTACAGGTGCTGGCGTTGGATTTGGGTTGCAACGTTTGGAATTCCACCATATGAATTGGACTAATATTTCTCTCCGTATTGATGGAGAAGAGGATAGGAAATGGAGGTTTTGGCTTTTCAA] [+] EMBL CB658050 [AGCGTGGGGAGGTGGCGGTGTAGGTGGCTCGTCGACGTCGGCCGGTGGCGCCCCTCCCCCGCTGAGTTCCAAGCCGCCGCCGCCCTCCTCCCGCCGCACGACCGCCCCGCCATCCACAGGTTTTTCCAACCAATTCCTCTTCCCCCACATTGATTCCACCCACTCACTACTGAAATTCAATTCAGCCTCTAGATTTTTCTCCTCCTCCTCACGAGTCACGACCTCACCGCTGCAGGTTCGTCAGAGAAGATGACAGGAAACGGGCGCTCGTCAGTCGCCTTCTCCAATACTCGCTCGTGCACCATGCTCTTGGAATCCCATTCCACCAAATTCGCATCAACCGCACGCTTGAAGGGAAGCCCTACCTGAATAAAAATGCCAACTTTCCTGGCTTCAACTTCAACACGTCGCATCAGGGGGAGTACGTTGGCATAGCATCTGAGCCTCTCTGCCTCGTTGGCCTGGACATTGTGTGCATCTCCAAGCCTCAACGAGAAACTGCCCTGGAGTTCATCAACAATTTCACTTCCTATCTCACTGATCATGAGTGGAACTGCATTGTTACTGCAGGCAGCCATGATGGTATGCTAACTGAGTTCTACAGGTATTGGTGTCTTAAAGAAGCATTTGTCAAAGCTACAGGTGCTGGCGTTGGATTTGGGTTGCAACGTTTGGAATTCCACCATATGAATTGGACTAATATTTCTCTCCGTATTGATGGAGAAGAGGATAGGAAATGGAGGTTTTGGCTTTTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5817#0 GATGATGGAGGAAGGAGAGAAGCAGAGCAGCGGGGGGCGGTGGCGGTGTAGGTGGCTCGT 60 consensus_5817#1 ----------------------------AGCGTGGGGAGGTGGCGGTGTAGGTGGCTCGT 32 **** **** ********************** consensus_5817#0 CGACGTCGGCCGGTGGCGCCCCTCCCCCGCCGAGTTCCAAGCCGCCGCCGCCGTCCTCCC 120 consensus_5817#1 CGACGTCGGCCGGTGGCGCCCCTCCCCCGCTGAGTTCCAAGCCGCCGCCGCCCTCCTCCC 92 ****************************** ********************* ******* consensus_5817#0 GCCGCACGACCGCCCCGCCATCCACAGGTT------------------------------ 150 consensus_5817#1 GCCGCACGACCGCCCCGCCATCCACAGGTTTTTCCAACCAATTCCTCTTCCCCCACATTG 152 ****************************** consensus_5817#0 ------------------------------------------------------------ consensus_5817#1 ATTCCACCCACTCACTACTGAAATTCAATTCAGCCTCTAGATTTTTCTCCTCCTCCTCAC 212 consensus_5817#0 --------------------------CGTCAGAGAAGAAGACAGGAAACGAGCGCTCGTC 184 consensus_5817#1 GAGTCACGACCTCACCGCTGCAGGTTCGTCAGAGAAGATGACAGGAAACGGGCGCTCGTC 272 ************ *********** ********* consensus_5817#0 AGCCGCCTGCTCAAGTACTCGCTCGTGCACCATGCCCTTGGAATGCCATTCCACCAAATT 244 consensus_5817#1 AGTCGCCTTCTCCAATACTCGCTCGTGCACCATGCTCTTGGAATCCCATTCCACCAAATT 332 ** ***** *** * ******************** ******** *************** consensus_5817#0 CGCATCAACCGCACGCTTGAAGGGAAGCCCTATCTGAATAAAAATGTCAACCTTCCTGGC 304 consensus_5817#1 CGCATCAACCGCACGCTTGAAGGGAAGCCCTACCTGAATAAAAATGCCAACTTTCCTGGC 392 ******************************** ************* **** ******** consensus_5817#0 TTCAACTTCAACACGTCGCATCAGGGGGAGTACGTTGGCATAGCATCTGAGCCTCTCTGC 364 consensus_5817#1 TTCAACTTCAACACGTCGCATCAGGGGGAGTACGTTGGCATAGCATCTGAGCCTCTCTGC 452 ************************************************************ consensus_5817#0 CTCGTTGGCCTGGACATTGTGTGCATCTCCAAGCCCCAACGAGAAACTGCCCTGGAGTTC 424 consensus_5817#1 CTCGTTGGCCTGGACATTGTGTGCATCTCCAAGCCTCAACGAGAAACTGCCCTGGAGTTC 512 *********************************** ************************ consensus_5817#0 ATCAACAATTTCACTTCCTATCTCACAGATCATGAGTGGAACTGCATTGTTACTGCAGAC 484 consensus_5817#1 ATCAACAATTTCACTTCCTATCTCACTGATCATGAGTGGAACTGCATTGTTACTGCAGGC 572 ************************** ******************************* * consensus_5817#0 AGTCATGATGGTATGCTAACTGAGTTCTACAGGTATTGGTGTCTTAAAGAAGCATTTGTC 544 consensus_5817#1 AGCCATGATGGTATGCTAACTGAGTTCTACAGGTATTGGTGTCTTAAAGAAGCATTTGTC 632 ** ********************************************************* consensus_5817#0 AAAGCTACAGGTGCTGGCGTTGGATTCGGGCTGCAACGTTTGGAATTCCACCATATGAAT 604 consensus_5817#1 AAAGCTACAGGTGCTGGCGTTGGATTTGGGTTGCAACGTTTGGAATTCCACCATATGAAT 692 ************************** *** ***************************** consensus_5817#0 TGGACTAATATTTCTCTCTGTATTGATGGAGAAGAGGCTAGGAAATGGATGTTTTGGCTT 664 consensus_5817#1 TGGACTAATATTTCTCTCCGTATTGATGGAGAAGAGGATAGGAAATGGAGGTTTTGGCTT 752 ****************** ****************** *********** ********** consensus_5817#0 TTCAAGATTGATGAAATGCATTTGGCATCCATTGCGAAAGGGCATCCAGAGGATGCTATT 724 consensus_5817#1 TTCAA------------------------------------------------------- 757 ***** consensus_5817#0 GACAGCTTCAGGAGAACATTATCTGATGTGGTTATTCAGGAGGGAGAATTGCATACGGCA 784 consensus_5817#1 ------------------------------------------------------------ consensus_5817#0 ATAGAAATTCCAGAAGAAGCTTTCACTCTATTGACAGTGGAACACCTTATACAGTTACAT 844 consensus_5817#1 ------------------------------------------------------------ consensus_5817#0 GATTAAATGGTCTTCTTGAATTTTGCGGTGACATACTAATGCAGGACTAAAATCAACAAA 904 consensus_5817#1 ------------------------------------------------------------ consensus_5817#0 TTGTGAGTGTATCCTGAAAGTTAAAATACATACATAGCACACCAAAATTAGGAAAAGTAT 964 consensus_5817#1 ------------------------------------------------------------ consensus_5817#0 CCTTGTATTTGCTCTCGGTGCTTCTGCAGAAATGAGAGCTTAAGATGTTAGGGCCTGTTT 1024 consensus_5817#1 ------------------------------------------------------------ consensus_5817#0 TTTCTTTCATAACAGAGGAGACGCTTGATATTGTAAGCTTTGACTAGTTTGGTAGTGTTT 1084 consensus_5817#1 ------------------------------------------------------------ consensus_5817#0 GCAAAGGCCCATTTTTTTAGGCAATTGTAAAGGCAGATTGATGATTGTTCACTGGAAAAA 1144 consensus_5817#1 ------------------------------------------------------------ consensus_5817#0 TCTAATCAAAAAAACTATTAGCAGCCAAAAAAAAAGA 1181 consensus_5817#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||