Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5820 cluster # 5820       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5820#0 length = 1923 sequences # 3  

consensusID : consensus_5820#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1923
fasta sequence
                              [CATCGAACACCTTGCGATCACCCTCTCACCACCGCTAGAGATCACCATTGTGAGGCTCCCCGGCCGGAGCTGGACGTTGGAGGGAGTGGAGGAAGAGCCGTGCTGCCGCCGTCGCCATGGGGGAAGCCGGGTAGCCGCTAGACATCAAGAAACGCCGTCGAGCACCTTACGTCGCCGCCGTCTGCCCCTGTCCTGTACCGCGTCGAGCTCCACTTCGCTGCGTTTCGCCGTCTCGCCGTCTCGCGGAGTACGTATTGATGAAATCTGATCCCCCAATTGCTCAACGCCGATCTCCTCGCCAGCACACCGTTCAGGGAAGTGGAGGGCCGACAATCAGGTCAGACCCGCAACCTCAAACCTCCAAACCGGCTGGGCAGACAGGTTCTCGCAAGAGAAAGCTGGTGCTTAATGACGACGAAGGCGATGACAGCAACAAATCTGGGGACAAGGGCACGCCCAATAAACTCCCAAAGCATACCATGCCCAGGAAAAAACTGGCTGGCCGTCAAATGCCAAAGATTAGAACATCTTCCAGGAAACCGTCTGATATAGATCCAACTAGAAAAAATCCTGATCCGACTGCCACAGAGTCAAATTTATCCAAAGATGCTGATCCGACTGCCGAAAACCAGTCGACTGCCGAAAGTCAGCCGACTGGCGCCCATGCTTCGGATGACAAGGCCAATCCGAGTGACCAGCCGCCGACTGGAAACCAGTCGGCAGCTACTGAAACTGCAACAACCCAAGAGCCCCCGACTGGAAACCAGTCGGATGTGGGTCTAAATCAAGAGATTCCTGAAGCTGAAGCACAGGCGACAACTTCTCAAGGACCAAAAGCTGGTAATGACTCGGTGATTGGGTCTCCGGATAAAGAGCAAAGATCACCTCACGCTCAGCTAGGCACATCCTCAGGTCCATTAGGTGGCGACGAAGAAGAAATTCTCCGCATAAAGGCAGCTGATGACTCTCGTCCTCCTATCTTACTCAAGTGGTGGGACGAGAACTCTCAAGTTTCCGGCATTGTCATAAATCGCCAAAAAGAAGATGAGGAAGTGTGCCAGCTGAAGAAAGTACTTGGAGAAGCTACTCGCATTGTGAATAGAATCCATCTTCGCAATGAGGCCAAGACTACAACCTTAGAAAAGCTGGTTCCACATTTGGGAACTCTTGAAGCCGTTAGGGAACAGCTACATGAGGCCAAGGAGCACGCAAAAAAGACGGAGAAAGAATTAAGGGAGCGAATTGCTCAGCTCCAGGATTCAAACTTCGAGCTGAGTGGTTCATCAAAAGCGCAAGCCACCAGAATGGCTCAGATGGAGAAACAAATTGAAGCCTTGAAAAGAGACAAGGTAGAACTGGCTGCGGAAAGGGACTCAGCCTTGAAGGAGGTTGAAGACCGTAAAATCAAATCTCAAGCTCAGTTTGATGTCCTGGTTGGTAAGATCAAGAAGCTTGAAGGAGCAAGAGACGAAGTCGCCAATGTCGCTACACCACTCGTCCAAGCTATGTTCCTTAATAACAGTGGTCCGAGTGCACTTGACGCAACCGAAATCTTTGACAAGCTGAGAGTTGCACCGGATGTATATTTCAAGAATATCAAGAAAGCTGGAAGTATGGGAGCTAGTATGGCATTGGCGATGACTAAATCCTTGTACCCGAGGATTGAAATTGATACCATTGATGGCTTTGCAGACGGGACAAGTGAAGAAGCTGCTCTTGATCTTATCAGTAATGCTCAAAGTGCGGCTGACAAGATTGCAAGTGATGTTGTAGAGCAATTCCGCAACAACGACCTTCAGCCGAGCAATAATAACTCTGATGATGAAAGGACTGATTCTGACTGAGTGTAAATGTAGCAAATGGAGGCTTAATTTGTACAATACTGGTGTATTTATGCTGTGCTTGATAGTTCTAACCAAGTCT]

[+] EMBL AK064489             [CATCGAACACCTTGCGATCACCCTCTCACCACCGCTAGAGATCACCATTGTGAGGCTCCCCGGCCGGAGCTGGACGTTGGAGGGAGTGGAGGAAGAGCCGTGCTGCCGCCGTCGCCATGGGGGAAGCCGGGTAGCCGCTAGACATCAAGAAACGCCGTCGAGCACCTTACGTCGCCGCCGTCTGCCCCTGTCCTGTACCGCGTCGAGCTCCACTTCGCTGCGTTTCGCCGTCTCGCCGTCTCGCGGAGTACGTATTGATGAAATCTGATCCCCCAATTGCTCAACGCCGATCTCCTCGCCAGCACACCGTTCAGGGAAGTGGAGGGCCGACAATCAGGTCAGACCCGCAACCTCAAACCTCCAAACCGGCTGGGCAGACAGGTTCTCGCAAGAGAAAGCTGGTGCTTAATGACGACGAAGGCGATGACAGCAACAAATCTGGGGACAAGGGCACGCCCAATAAACTCCCAAAGCATACCATGCCCAGGAAAAAACTGGCTGGCCGTCAAATGCCAAAGATTAGAACATCTTCCAGGAAACCGTCTGATATAGATCCAACTAGAAAAAATCCTGATCCGACTGCCACAGAGTCAAATTTATCCAAAGATGCTGATCCGACTGCCGAAAACCAGTCGACTGCCGAAAGTCAGCCGACTGGCGCCCATGCTTCGGATGACAAGGCCAATCCGAGTGACCAGCCGCCGACTGGAAACCAGTCGGCAGCTACTGAAACTGCAACAACCCAAGAGCCCCCGACTGGAAACCAGTCGGATGTGGGTCTAAATCAAGAGATTCCTGAAGCTGAAGCACAGGCGACAACTTCTCAAGGACCAAAAGCTGGTAATGACTCGGTGATTGGGTCTCCGGATAAAGAGCAAAGATCACCTCACGCTCAGCTAGGCGCATCCTCAGGTCCATTAGGTGGCGACGAAGAAGAAATTCTCCGCATAAAGGCAGCTGATGACTCTCGTCCTCCTATCTTACTCAAGTGGTGGGACGAGAACTCTCAAGTTTCCGGCATTGTCATAAATCGCCAAAAAGAAGATGAGGAAGTGTGCCAGCTGAAGAAAGTACTTGGAGAAGCTACTCGCATTGTGAATAGAATCCATCTTCGCAATGAGGCCAAGACTACAACCTTAGAAAAGCTGGTTCCACATTTGGGAACTCTTGAAGCCGTTAGGGAACAGCTACATGAGGCCAAGGAGCACGCAAAAAAGACGGAGAAAGAATTAAGGGAGCGAATTGCTCAGCTCCAGGATTCAAACTTCGAGCTGAGTGGTTCATCAAAAGCGCAAGCCACCAGAATGGCTCAGATGGAGAAACAAATTGAAGCCTTGAAAAGAGACAAGGTAGAACTGGCTGCGGAAAGGGACTCAGCCTTGAAGGAGGTTGAAGACCGTAAAATCAAATCTCAAGCTCAGTTTGATGTCCTGGTTGGTAAGATCAAGAAGCTTGAAGGAGCAAGAGACGAAGTCGCCAATGTCGCTACACCACTCGTCCAAGCTATGTTCCTTAATAACAGTGGTCCGAGTGCACTTGACGCAACCGAAATCTTTGACAAGCTGAGAGTTGCACCGGATGTATATTTCAAGAATATCAAGAAAGCTGGAAGTATGGGAGCTAGTATGGCATTGGCGATGACTAAATCCTTGTACCCGAGGATTGAAATTGATACCATTGATGGCTTTGCAGACGGGACAAGTGAAGAAGCTGCTCTTGATCTTATCAGTAATGCTCAAAGTGCGGCTGACAAGATTGCAAGTGATGTTGTAGAGCAATTCCGCAACAACGACCTTCAGCCGAGCAATAATAACTCTGATGATGAAAGGACTGATTCTGACTGAGTGTAAATGTAGCAAATGGAGGCTTAATTTGTACAATACTGGTGTATTTATGCTGTGCTTGATAGTTCTAACCAAGTCT]
[+] EMBL CB655607             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGTCGACTGCCGAAAGTCAGCCGACTGGCGCCCATGCTTCGGATGACAAGGCCAATCCGAGTGACCAGCCGCCGACTGGAAACCAGTCGGCAGCTACTGAAACTGCAACAACCCAAGAGCCCCCGACTGGAAACCAGTCGGATGTGGGTCTAAATCAAGAGATTCCTGAAGCTGAAGCACAGGCGACAACTTCTCAAGGACCAAAAGCTGGTAATGACTCGGTGATTGGGTCTCCGGATAAAGAGCAAAGATCACCTCACGCTCAGCTAGGCACATCCTCAGGTCCATTAGGTGGCGACGAAGAAGAAATTCTCCGCATAAAGGCAGCTGATGACTCTCGTCCTCCTATCTTACTCAAGTGGTGGGACGAGAACTCTCAAGTTTCCGGCATTGTCATAAATCGCCAAAAAGAAGATGAGGAAGTGTGCCAGCTGAAGAAAGTACTTGGAGAAGCTACTCGCATTGTGAATAGAATCCATCTTCGCAATGAGGCCAAGACTACAACCTTAGAAAAGCTGGTTCCACATTTGGGAACTCTTGAAGCCGTTAGGGAACAGCTACATGAGGCCAAGGAGCACGCAAAAAAGACGGAGAAAGAATTAAGGGAGCGAATTGCTCAGCTCCAGGATTCAAACTTCGAGCTGAGTGGTTCATCAAAAGCGCAAGCCACCAGAATGGCTCAGATGGAGAAACAAATTGAAGCCTTGAAAAGAGACAAGGTAGAACTGGCTGCGGAAAGGGACTCAGCCTTGAAGGAGGTTGAAGACCGTAAAATCAAATCTCAAGCTCAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB655608             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGTCGACTGCCGAAAGTCAGCCGACTGGCGCCCATGCTTCGGATGACAAGGCCAATCCGAGTGACCAGCCGCCGACTGGAAACCAGTCGGCAGCTACTGAAACTGCAACAACCCAAGAGCCCCCGACTGGAAACCAGTCGGATGTGGGTCTAAATCAAGAGATTCCTGAAGCTGAAGCACAGGCGACAACTTCTCAAGGACCAAAAGCTGGTAATGACTCGGTGATTGGGTCTCCGGATAAAGAGCAAAGATCACCTCACGCTCAGCTAGGCACATCCTCAGGTCCATTAGGTGGCGACGAAGAAGAAATTCTCCGCATAAAGGCAGCTGATGACTCTCGTCCTCCTATCTTACTCAAGTGGTGGGACGAGAACTCTCAAGTTTCCGGCATTGTCATAAATCGCCAAAAAGAAGATGAGGAAGTGTGCCAGCTGAAGAAAGTACTTGGAGAAGCTACTCGCATTGTGAATAGAATCCATCTTCGCAATGAGGCCAAGACTACAACCTTAGAAAAGCTGGTTCCACATTTGGGAACTCTTGAAGCCGTTAGGGAACAGCTACATGAGGCCAAGGAGCACGCAAAAAAGACGGAGAAAGAATTAAGGGAGCGAATTGCTCAGCTCCAGGATTCAAACTTCGAGCTGAGTGGTTCATCAAAAGCGCAAGCCACCAGAATGGCTCAGATGGAGAAACAAATTGAAGCCTTGAAAAGAGACAAGGTAGAACTGGCTGCGGAAAGGGACTCAGCCTTGAAGGAGGTTGAAGACCGTAAAATCAAATCTCAAGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]


>consensus_5820#0 CATCGAACACCTTGCGATCACCCTCTCACCACCGCTAGAGATCACCATTGTGAGGCTCCC CGGCCGGAGCTGGACGTTGGAGGGAGTGGAGGAAGAGCCGTGCTGCCGCCGTCGCCATGG GGGAAGCCGGGTAGCCGCTAGACATCAAGAAACGCCGTCGAGCACCTTACGTCGCCGCCG TCTGCCCCTGTCCTGTACCGCGTCGAGCTCCACTTCGCTGCGTTTCGCCGTCTCGCCGTC TCGCGGAGTACGTATTGATGAAATCTGATCCCCCAATTGCTCAACGCCGATCTCCTCGCC AGCACACCGTTCAGGGAAGTGGAGGGCCGACAATCAGGTCAGACCCGCAACCTCAAACCT CCAAACCGGCTGGGCAGACAGGTTCTCGCAAGAGAAAGCTGGTGCTTAATGACGACGAAG GCGATGACAGCAACAAATCTGGGGACAAGGGCACGCCCAATAAACTCCCAAAGCATACCA TGCCCAGGAAAAAACTGGCTGGCCGTCAAATGCCAAAGATTAGAACATCTTCCAGGAAAC CGTCTGATATAGATCCAACTAGAAAAAATCCTGATCCGACTGCCACAGAGTCAAATTTAT CCAAAGATGCTGATCCGACTGCCGAAAACCAGTCGACTGCCGAAAGTCAGCCGACTGGCG CCCATGCTTCGGATGACAAGGCCAATCCGAGTGACCAGCCGCCGACTGGAAACCAGTCGG CAGCTACTGAAACTGCAACAACCCAAGAGCCCCCGACTGGAAACCAGTCGGATGTGGGTC TAAATCAAGAGATTCCTGAAGCTGAAGCACAGGCGACAACTTCTCAAGGACCAAAAGCTG GTAATGACTCGGTGATTGGGTCTCCGGATAAAGAGCAAAGATCACCTCACGCTCAGCTAG GCACATCCTCAGGTCCATTAGGTGGCGACGAAGAAGAAATTCTCCGCATAAAGGCAGCTG ATGACTCTCGTCCTCCTATCTTACTCAAGTGGTGGGACGAGAACTCTCAAGTTTCCGGCA TTGTCATAAATCGCCAAAAAGAAGATGAGGAAGTGTGCCAGCTGAAGAAAGTACTTGGAG AAGCTACTCGCATTGTGAATAGAATCCATCTTCGCAATGAGGCCAAGACTACAACCTTAG AAAAGCTGGTTCCACATTTGGGAACTCTTGAAGCCGTTAGGGAACAGCTACATGAGGCCA AGGAGCACGCAAAAAAGACGGAGAAAGAATTAAGGGAGCGAATTGCTCAGCTCCAGGATT CAAACTTCGAGCTGAGTGGTTCATCAAAAGCGCAAGCCACCAGAATGGCTCAGATGGAGA AACAAATTGAAGCCTTGAAAAGAGACAAGGTAGAACTGGCTGCGGAAAGGGACTCAGCCT TGAAGGAGGTTGAAGACCGTAAAATCAAATCTCAAGCTCAGTTTGATGTCCTGGTTGGTA AGATCAAGAAGCTTGAAGGAGCAAGAGACGAAGTCGCCAATGTCGCTACACCACTCGTCC AAGCTATGTTCCTTAATAACAGTGGTCCGAGTGCACTTGACGCAACCGAAATCTTTGACA AGCTGAGAGTTGCACCGGATGTATATTTCAAGAATATCAAGAAAGCTGGAAGTATGGGAG CTAGTATGGCATTGGCGATGACTAAATCCTTGTACCCGAGGATTGAAATTGATACCATTG ATGGCTTTGCAGACGGGACAAGTGAAGAAGCTGCTCTTGATCTTATCAGTAATGCTCAAA GTGCGGCTGACAAGATTGCAAGTGATGTTGTAGAGCAATTCCGCAACAACGACCTTCAGC CGAGCAATAATAACTCTGATGATGAAAGGACTGATTCTGACTGAGTGTAAATGTAGCAAA TGGAGGCTTAATTTGTACAATACTGGTGTATTTATGCTGTGCTTGATAGTTCTAACCAAG TCT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)