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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5828#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence
[ACGAGACAAGGGGGGATATTATAACTGGAGAAAGAGCAGCGCTTAAGAAAATNAACTGGATGATGGCAAAGAAGGGTTTCCACGCCAAATCTTGCGTGAGATTAGACTATTAAAAAAGCTGGATCACGAGAACATCATCAGATTGAAAGAGATTGTAGTATCTCCTGGTACAGCACATGGAGCAGGAGGATCAGATGATTACATGTATAGGGGAGATATCTATATGGTTTTTGAATACATGGATCATGATTTGAAGAAAGTCTTGCACCACAGTACCCCATCCCAAGTCAAGTATTATATGGAGCAGTTGTTAAAAGGATTGCACTACTGCCATGTCAACAATGTACTTCATCGTGATATCAAAGGGGCTAATCTTCTAATAAGTGGTGGTGGTAAGCTGTTAAAGCTCGCTGATTTTGGCCTTGCAAGGCCATTCACTAGAGACGGAAGTTTCACAAATCATGTTATTACTCTCTGGTACCGACCCCCAGAGTTGCTCCTCGGTGCCACAAATTATGCTGAAGCAGTGGATATATGGTCTGTTGGTTGCATATTTGCAGAATTTTTATTGAGGAAACCATTATTTCCTGGCAGAACTGAGCAAGAGCAGCTATCAAAAATATTTTGAACTCTGTGGATTTCCAAATGAGGGAAAACTGGCCAGGAGTATCCAAACTTTCATTGTACAAGACTATTTATNCTACAACCCCCAACGAAACGACGTCTGA]
[+] EMBL CA766406 [ACGAGACAAGGGGGGATATTATAACTGGAGAAAGAGCAGCGCTTAAGAAAATNAACTGGATGATGGCAAAGAAGGGTTTCCACGCCAAATCTTGCGTGAGATTAGACTATTAAAAAAGCTGGATCACGAGAACATCATCAGATTGAAAGAGATTGTAGTATCTCCTGGTACAGCACATGGAGCAGGAGGATCAGATGATTACATGTATAGGGGAGATATCTATATGGTTTTTGAATACATGGATCATGATTTGAAGAAAGTCTTGCACCACAGTACCCCATCCCAAGTCAAGTATTATATGGAGCAGTTGTTAAAAGGATTGCACTACTGCCATGTCAACAATGTACTTCATCGTGATATCAAAGGGGCTAATCTTCTAATAAGTGGTGGTGGTAAGCTGTTAAAGCTCGCTGATTTTGGCCTTGCAAGGCCATTCACTAGAGACGGAAGTTTCACAAATCATGTTATTACTCTCTGGTACCGACCCCCAGAGTTGCTCCTCGGTGCCACAAATTATGCTGAAGCAGTGGATATATGGTCTGTTGGTTGCATATTTGCAGAATTTTTATTGAGGAAACCATTATTTCCTGGCAGAACTGAGCAAGAGCAGCTATCAAAAATATTTTGAACTCTGTGGATTTCCAAATGAGGGAAAACTGGCCAGGAGTATCCAAACTTTCATTGTACAAGACTATTTATNCTACAACCCCCAACGAAACGACGTCTGA]
consensusID : consensus_5828#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence
[GCTGCCTGCCTAGCCTAGCCTTCGCCGTCGCCGCCGCCGCCGCCGCCCTCGCCGTTGATTCCGCCGCCCGCCGCGTGATGGACGGGGAGGAGGCGCCGCCGGGAGCGCTCAACCTGGCCGACTACGCCCCCGCCGGGGCTTTTACCGTCGACTGCTTCAGGCGCATCCGCAAGATCGGCGAGGGCACCTACGGGTCCAACGACTTTGCAATTTCATCCATATTCCATAAGGAAAAAGAATCCAAGACTGCTCTTTCCTGTGTGCAGAAGAAATGAGGTTTCGCTTGATTGGCAACAGTCCAGATTATGCCACACTAGTATGGTTTGCAGTTTGCAGCTCACTGAGTCCAAAAATAAATGACGCAGTTGCAATATTTGTTTCCTTTTTATTTTCCTTAGGACCAATATATAATAACAATACATATTAAATATTTAAATGTGGTACCAGTTTTTTTATGAATTTACCTTCTTCACCATTGGCCAAGCTGGCAGTGCGCTAGTTTTACCTCTACATTTATTTATTTTTCC]
[+] EMBL CF305664 [GCTGCCTGCCTAGCCTAGCCTTCGCCGTCGCCGCCGCCGCCGCCGCCCTCGCCGTTGATTCCGCCGCCCGCCGCGTGATGGACGGGGAGGAGGCGCCGCCGGGAGCGCTCAACCTGGCCGACTACGCCCCCGCCGGGGCTTTTACCGTCGACTGCTTCAGGCGCATCCGCAAGATCGGCGAGGGCACCTACGGGTCCAACGACTTTGCAATTTCATCCATATTCCATAAGGAAAAAGAATCCAAGACTGCTCTTTCCTGTGTGCAGAAGAAATGAGGTTTCGCTTGATTGGCAACAGTCCAGATTATGCCACACTAGTATGGTTTGCAGTTTGCAGCTCACTGAGTCCAAAAATAAATGACGCAGTTGCAATATTTGTTTCCTTTTTATTTTCCTTAGGACCAATATATAATAACAATACATATTAAATATTTAAATGTGGTACCAGTTTTTTTATGAATTTACCTTCTTCACCATTGGCCAAGCTGGCAGTGCGCTAGTTTTACCTCTACATTTATTTATTTTTCC]
consensusID : consensus_5828#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence
[CGTCGCCGCCGCCGCCGCCGCCCTCGCCGTTGATTCCGCCGCCCGCCGCGTGATGGACGGGGAGGAGGCGCCGCCGGGAGCGCTCAACCTGGCCGACTACGCCCCCGCCGGGGCCCGCACCGTCGACTGCTTCAGGCGCATCCGCAAGATCGGCGAGGGCACCTACGGTGAAGTATTCGAGGCTATGGATATTATAACTGGAGAAAGAGCAGCACTTAAGAAAATCAAACTGGATGATGGCAAAGAAGGGTTTCCACGCCAAATCTTGCGTGAGATTAAACTATTAAAAAAGCTGGATCACGAGAACATCATCAGATTGAAAGAAATTGTAGTATCTCCTGGTACAGCACATGGAGCAGGAGGATCAGATGATTACATGTATAGGGGAGATATCTATATGGTTTTTGAATACATGGATCATGATTTGA]
[+] EMBL AU181247 [CGTCGCCGCCGCCGCCGCCGCCCTCGCCGTTGATTCCGCCGCCCGCCGCGTGATGGACGGGGAGGAGGCGCCGCCGGGAGCGCTCAACCTGGCCGACTACGCCCCCGCCGGGGCCCGCACCGTCGACTGCTTCAGGCGCATCCGCAAGATCGGCGAGGGCACCTACGGTGAAGTATTCGAGGCTATGGATATTATAACTGGAGAAAGAGCAGCACTTAAGAAAATCAAACTGGATGATGGCAAAGAAGGGTTTCCACGCCAAATCTTGCGTGAGATTAAACTATTAAAAAAGCTGGATCACGAGAACATCATCAGATTGAAAGAAATTGTAGTATCTCCTGGTACAGCACATGGAGCAGGAGGATCAGATGATTACATGTATAGGGGAGATATCTATATGGTTTTTGAATACATGGATCATGATTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5828#0 ------------------------------------------------------------
consensus_5828#2 CGTCGCCGCCGCCGCCGCCGCCCTCGCCGTTGATTCCGCCGCCCGCCGCGTGATGGACGG 60
consensus_5828#1 ------------------------------------------------------------
consensus_5828#0 ------------------------------------------------------------
consensus_5828#2 GGAGGAGGCGCCGCCGGGAGCGCTCAACCTGGCCGACTACGCCCCCGCCGGGGCCCGCAC 120
consensus_5828#1 ------------------------------------------------------------
consensus_5828#0 ---------------------------------------------------ACGAGACAA 9
consensus_5828#2 CGTCGACTGCTTCAGGCGCATCCGCAAGATCGGCGAGGGCACCTACGGTGAAGTATTCGA 180
consensus_5828#1 ------------------------------------------------------------
consensus_5828#0 GG--GGGGATATTATAACTGGAGAAAGAGCAGCGCTTAAGAAAATNAA-CTGGATGATGG 66
consensus_5828#2 GGCTATGGATATTATAACTGGAGAAAGAGCAGCACTTAAGAAAATCAAACTGGATGATGG 240
consensus_5828#1 -------GCTGCC-TGCCTAGCCTAGCCTTCGCCGTCGCCGCCGCCGCCGCCGCCCTCGC 52
* * * ** * * ** * * *
consensus_5828#0 CAAAGAAGGGTTTCCACGCCAAATCTTGCGTGAGATTAGA---CTATTAAAAAAGCTGGA 123
consensus_5828#2 CAAAGAAGGGTTTCCACGCCAAATCTTGCGTGAGATTAAA---CTATTAAAAAAGCTGGA 297
consensus_5828#1 CGTTGATTCCGCCGCCCGCCGCGTGATGGACGGGGAGGAGGCGCCGCCGGGAGCGCTCAA 112
* ** * **** * ** * * * * *** *
consensus_5828#0 TCACGAGAACATCATCAGATTGAAAGAGATTGTAGTATCTCCTGGTACAGCACATGGAGC 183
consensus_5828#2 TCACGAGAACATCATCAGATTGAAAGAAATTGTAGTATCTCCTGGTACAGCACATGGAGC 357
consensus_5828#1 CCTGGCCGACTACGCCC--CCGCCGGGGCTTTTACCGTCGACTGCTTCAG---GCGCATC 167
* * ** * * * * ** ** ** *** * *** * * *
consensus_5828#0 AGGAGGATCAGATGATTACATGTATAGGGGAGATATCTATATGGTTTTTGAATACATGGA 243
consensus_5828#2 AGGAGGATCAGATGATTACATGTATAGGGGAGATATCTATATGGTTTTTGAATACATGGA 417
consensus_5828#1 CGCAAGATC-GGCGAGGGCACCTACGGGTCCAACGACTTTGCAATTTC---ATCCATATT 223
* * **** * ** ** ** ** * ** * *** ** ***
consensus_5828#0 TCATGATTTGAAGAAAGTCTTGCACCACAGTACCCCATCC-CAAGTCAAGTATTATATGG 302
consensus_5828#2 TCATGATTTGA------------------------------------------------- 428
consensus_5828#1 CCATAAGG-AAAAAGAATCCAAGACTGCTCTTTCCTGTGTGCAGAAGAAATGAGGTTTCG 282
*** * *
consensus_5828#0 AGCAGTTGTTAAAAGGATTGCACTACTGCCATGTCAACAATGTACTTCATCGTGATATCA 362
consensus_5828#2 ------------------------------------------------------------
consensus_5828#1 CTTGATTGGCAACAG--TCCAGATTATGCCACACTAGTATGGTTTGCAGTTTGCAGCTCA 340
consensus_5828#0 AAGGGGCTAATCTTCTAATAAGTGGTGGTGGTAAGCTGTTAAAGCTCGCTGATTTTGGCC 422
consensus_5828#2 ------------------------------------------------------------
consensus_5828#1 CTGAGTCCAAA-----AATAAATGACGCAGTTGCAATATTTGTTTCCTTTTTATTTTCCT 395
consensus_5828#0 TTGCAAGGCCATTCACTAGAGACGGAAGTTTCACAAATCATGTTATTACTCTCTGGTACC 482
consensus_5828#2 ------------------------------------------------------------
consensus_5828#1 TAGGACCAATATATAATAACAATACATATTAAATATTTAAATGTGGTACCAGTTTTT--- 452
consensus_5828#0 GACCCCCAGAGTTGCTCCTCGGTGCCACAAATTATGCTGAAGCAGTGGATATATGGTCTG 542
consensus_5828#2 ------------------------------------------------------------
consensus_5828#1 ----TTATGAATTTACCTTCTTCACCATTGGCCAAGCTG--GCAGTGCGC---TAGTT-- 501
consensus_5828#0 TTGGTTGCATATTTGCAGAATTTTTATTGAGGAAACCATTATTTCCTGGCAGAACTGAGC 602
consensus_5828#2 ------------------------------------------------------------
consensus_5828#1 TTACCTCTACATTTATTTATTTTTCC---------------------------------- 527
consensus_5828#0 AAGAGCAGCTATCAAAAATATTTTGAACTCTGTGGATTTCCAAATGAGGGAAAACTGGCC 662
consensus_5828#2 ------------------------------------------------------------
consensus_5828#1 ------------------------------------------------------------
consensus_5828#0 AGGAGTATCCAAACTTTCATTGTACAAGACTATTTATNCTACAACCCCCAACGAAACGAC 722
consensus_5828#2 ------------------------------------------------------------
consensus_5828#1 ------------------------------------------------------------
consensus_5828#0 GTCTGA 728
consensus_5828#2 ------
consensus_5828#1 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||