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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5829#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1038 fasta sequence
[AAAAGAGAAGGGGAAGGAAAGCCATGGCGGCCACGAGCTCCACCTCCACGGCGCTCTTCTCGCTGGCCATCCCTTCCTCCCGCGTCGTCTCCACCCGAGGCCACCGCAAGGCTAGCTCTGGCAGTGGCCCCTTCCGGGCGGCCCGCATCAGGTGCTCCAACGCCGCCTCGCCGAACGCGTCCGCCGGAGCCGCCTCCGCGGAGGAGGCAGCGCCGCCGCCCAAGCCCCAAATCGACCTCGAGTTCGTCGGACCGAAGGCGGATGCCGATGGGTCGTTCCCGGTGGACCGGGCGGCGGCGGGCAGCGGCGAGAAGCTCCTCCGGGACGTCATGGTCGAGAACAAGATCGAGCTCTACGCGGCATATGGGAAGGTGATGAACTGCGGCGGCGGCGGCAGCTGCGGCACTTGCATCGTCGAGATAGTTGATGGCAAGGAGCTCCTGAATGAAAGAACAAACACTGAGAACCGGTATCTGAAGAAGAAACCGGAGTCATGGAGGCTTGCTTGTCAGACTATTGTTGGAAACAAAGAAAATTCCGGCAAGTACAAGACTACAAGTATACCACAAGAACGAAGGGTCTTTTCGCTCATGCTTATCACCCAAAATTTGGCCCACGAAAATGCATTTATTCACCATGATTTCAGTGAGATTTAAACGGTTTTATTATTATTATTTATTTTCGCAGGTTGTCGTCCAACGTCTGCCCCAGTGGAAAAAATGATTGTAGTGCACACGTGATGCACTAACTGCATGTGATCAGCGATCAAGTTGTACTACCTGCTATGCACTGTTGAACACGGAAGCATGCAATGATTTTTCTCCTGGAATTTATTGGCAATATGTAAAAATTATACCATATCATTGAAATTTACATTTACTTCGGTAGAAAAATAACTTTTACGGATTTGTTTGTGAAGTGCCTTAGTGAATATAACTATACATGAAAAAATATCTCTTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK062997 [AAAAGAGAAGGGGAAGGAAAGCCATGGCGGCCACGAGCTCCACCTCCACGGCGCTCTTCTCGCTGGCCATCCCTTCCTCCCGCGTCGTCTCCACCCGAGGCCACCGCAAGGCTAGCTCTGGCAGTGGCCCCTTCCGGGCGGCCCGCATCAGGTGCTCCAACGCCGCCTCGCCGAACGCGTCCGCCGGAGCCGCCTCCGCGGAGGAGGCAGCGCCGCCGCCCAAGCCCCAAATCGACCTCGAGTTCGTCGGACCGAAGGCGGATGCCGATGGGTCGTTCCCGGTGGACCGGGCGGCGGCGGGCAGCGGCGAGAAGCTCCTCCGGGACGTCATGGTCGAGAACAAGATCGAGCTCTACGCGGCATATGGGAAGGTGATGAACTGCGGCGGCGGCGGCAGCTGCGGCACTTGCATCGTCGAGATAGTTGATGGCAAGGAGCTCCTGAATGAAAGAACAAACACTGAGAACCGGTATCTGAAGAAGAAACCGGAGTCATGGAGGCTTGCTTGTCAGACTATTGTTGGAAACAAAGAAAATTCCGGCAAGTACAAGACTACAAGTATACCACAAGAACGAAGGGTCTTTTCGCTCATGCTTATCACCCAAAATTTGGCCCACGAAAATGCATTTATTCACCATGATTTCAGTGAGATTTAAACGGTTTTATTATTATTATTTATTTTCGCAGGTTGTCGTCCAACGTCTGCCCCAGTGGAAAAAATGATTGTAGTGCACACGTGATGCACTAACTGCATGTGATCAGCGATCAAGTTGTACTACCTGCTATGCACTGTTGAACACGGAAGCATGCAATGATTTTTCTCCTGGAATTTATTGGCAATATGTAAAAATTATACCATATCATTGAAATTTACATTT ]
[+] EMBL CF302716 [ TGTACTACCTGCTATGCACTGTTGAACACGGAAGCATGCAATGATTTTTCTCCTGGAATTTATTGGCAATATGTAAAAATTATACCATATCATTGAAATTTACATTTACTTCGGTAGAAAAATAACTTTTACGGATTTGTTTGTGAAGTGCCTTAGTGAATATAACTATACATGAAAAAATATCTCTTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_5829#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 742 fasta sequence
[AAAAGAGAAGGGGAAGGAAAGCCATGGCGGCCACGAGCTCCACCTCCACGGCGCTCTTCTCGCTGGCCATCCCTTCCTCCCGCGTCGTCTCCACCCGAGGCCACCGCAAGGCTAGCTCTGGCAGTGGCCCCTTCCGGGCGGCCCGCATCAGGTGCTCCAACGCCGCCTCGCCGAACGCGTCCGCCGGAGCCGCCTCCGCGGAGGAGGCAGCGCCGCCGCCCAAGCCCCAAATCGACCTCGAGTTCGTCGGACCGAAGGCGGATGCCGATGGGTCGTTCCCGGTGGACCGGGCGGCGGCGGGCAGCGGCGAGAAGCTCCTCCGGGACGTCATGGTCGAGAACAAGATCGAGCTCTACGCGGCATATGGGAAGGTGATGAACTGCGGCGGCGGCGGCAGCTGCGGCACTTGCATCGTCGAGATAGTTGATGGCAAGGAGCTCCTGAATGAAAGAACAAACACTGAGAACCGGTATCTGAAGAAGAAACCGGAGTCATGGAGGCTTGCTTGTCAGACTATTGTTGGAAACAAAGAAAATTCCGGCAAGGTTGTCGTCCAACGTCTGCCCCAGTGGAAAAAATGATTGTAGTGCACACGTGATGCACTAACTGCATGTGATCAGCGATCAAGTTGTACTACCTGCTATGCACTGTTGAACACGGAAGCATGCAATGATTTTTCTCCTGGAATTTATTGGCAATATGTAAAAATTATACCATATCATTGAAATTTACATTTACTTCG]
[+] EMBL AK062890 [AAAAGAGAAGGGGAAGGAAAGCCATGGCGGCCACGAGCTCCACCTCCACGGCGCTCTTCTCGCTGGCCATCCCTTCCTCCCGCGTCGTCTCCACCCGAGGCCACCGCAAGGCTAGCTCTGGCAGTGGCCCCTTCCGGGCGGCCCGCATCAGGTGCTCCAACGCCGCCTCGCCGAACGCGTCCGCCGGAGCCGCCTCCGCGGAGGAGGCAGCGCCGCCGCCCAAGCCCCAAATCGACCTCGAGTTCGTCGGACCGAAGGCGGATGCCGATGGGTCGTTCCCGGTGGACCGGGCGGCGGCGGGCAGCGGCGAGAAGCTCCTCCGGGACGTCATGGTCGAGAACAAGATCGAGCTCTACGCGGCATATGGGAAGGTGATGAACTGCGGCGGCGGCGGCAGCTGCGGCACTTGCATCGTCGAGATAGTTGATGGCAAGGAGCTCCTGAATGAAAGAACAAACACTGAGAACCGGTATCTGAAGAAGAAACCGGAGTCATGGAGGCTTGCTTGTCAGACTATTGTTGGAAACAAAGAAAATTCCGGCAAGGTTGTCGTCCAACGTCTGCCCCAGTGGAAAAAATGATTGTAGTGCACACGTGATGCACTAACTGCATGTGATCAGCGATCAAGTTGTACTACCTGCTATGCACTGTTGAACACGGAAGCATGCAATGATTTTTCTCCTGGAATTTATTGGCAATATGTAAAAATTATACCATATCATTGAAATTTACATTTACTTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5829#0 AAAAGAGAAGGGGAAGGAAAGCCATGGCGGCCACGAGCTCCACCTCCACGGCGCTCTTCT 60
consensus_5829#1 AAAAGAGAAGGGGAAGGAAAGCCATGGCGGCCACGAGCTCCACCTCCACGGCGCTCTTCT 60
************************************************************
consensus_5829#0 CGCTGGCCATCCCTTCCTCCCGCGTCGTCTCCACCCGAGGCCACCGCAAGGCTAGCTCTG 120
consensus_5829#1 CGCTGGCCATCCCTTCCTCCCGCGTCGTCTCCACCCGAGGCCACCGCAAGGCTAGCTCTG 120
************************************************************
consensus_5829#0 GCAGTGGCCCCTTCCGGGCGGCCCGCATCAGGTGCTCCAACGCCGCCTCGCCGAACGCGT 180
consensus_5829#1 GCAGTGGCCCCTTCCGGGCGGCCCGCATCAGGTGCTCCAACGCCGCCTCGCCGAACGCGT 180
************************************************************
consensus_5829#0 CCGCCGGAGCCGCCTCCGCGGAGGAGGCAGCGCCGCCGCCCAAGCCCCAAATCGACCTCG 240
consensus_5829#1 CCGCCGGAGCCGCCTCCGCGGAGGAGGCAGCGCCGCCGCCCAAGCCCCAAATCGACCTCG 240
************************************************************
consensus_5829#0 AGTTCGTCGGACCGAAGGCGGATGCCGATGGGTCGTTCCCGGTGGACCGGGCGGCGGCGG 300
consensus_5829#1 AGTTCGTCGGACCGAAGGCGGATGCCGATGGGTCGTTCCCGGTGGACCGGGCGGCGGCGG 300
************************************************************
consensus_5829#0 GCAGCGGCGAGAAGCTCCTCCGGGACGTCATGGTCGAGAACAAGATCGAGCTCTACGCGG 360
consensus_5829#1 GCAGCGGCGAGAAGCTCCTCCGGGACGTCATGGTCGAGAACAAGATCGAGCTCTACGCGG 360
************************************************************
consensus_5829#0 CATATGGGAAGGTGATGAACTGCGGCGGCGGCGGCAGCTGCGGCACTTGCATCGTCGAGA 420
consensus_5829#1 CATATGGGAAGGTGATGAACTGCGGCGGCGGCGGCAGCTGCGGCACTTGCATCGTCGAGA 420
************************************************************
consensus_5829#0 TAGTTGATGGCAAGGAGCTCCTGAATGAAAGAACAAACACTGAGAACCGGTATCTGAAGA 480
consensus_5829#1 TAGTTGATGGCAAGGAGCTCCTGAATGAAAGAACAAACACTGAGAACCGGTATCTGAAGA 480
************************************************************
consensus_5829#0 AGAAACCGGAGTCATGGAGGCTTGCTTGTCAGACTATTGTTGGAAACAAAGAAAATTCCG 540
consensus_5829#1 AGAAACCGGAGTCATGGAGGCTTGCTTGTCAGACTATTGTTGGAAACAAAGAAAATTCCG 540
************************************************************
consensus_5829#0 GCAAGTACAAGACTACAAGTATACCACAAGAACGAAGGGTCTTTTCGCTCATGCTTATCA 600
consensus_5829#1 GCAAG------------------------------------------------------- 545
*****
consensus_5829#0 CCCAAAATTTGGCCCACGAAAATGCATTTATTCACCATGATTTCAGTGAGATTTAAACGG 660
consensus_5829#1 ------------------------------------------------------------
consensus_5829#0 TTTTATTATTATTATTTATTTTCGCAGGTTGTCGTCCAACGTCTGCCCCAGTGGAAAAAA 720
consensus_5829#1 ---------------------------GTTGTCGTCCAACGTCTGCCCCAGTGGAAAAAA 578
*********************************
consensus_5829#0 TGATTGTAGTGCACACGTGATGCACTAACTGCATGTGATCAGCGATCAAGTTGTACTACC 780
consensus_5829#1 TGATTGTAGTGCACACGTGATGCACTAACTGCATGTGATCAGCGATCAAGTTGTACTACC 638
************************************************************
consensus_5829#0 TGCTATGCACTGTTGAACACGGAAGCATGCAATGATTTTTCTCCTGGAATTTATTGGCAA 840
consensus_5829#1 TGCTATGCACTGTTGAACACGGAAGCATGCAATGATTTTTCTCCTGGAATTTATTGGCAA 698
************************************************************
consensus_5829#0 TATGTAAAAATTATACCATATCATTGAAATTTACATTTACTTCGGTAGAAAAATAACTTT 900
consensus_5829#1 TATGTAAAAATTATACCATATCATTGAAATTTACATTTACTTCG---------------- 742
********************************************
consensus_5829#0 TACGGATTTGTTTGTGAAGTGCCTTAGTGAATATAACTATACATGAAAAAATATCTCTTT 960
consensus_5829#1 ------------------------------------------------------------
consensus_5829#0 NAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1020
consensus_5829#1 ------------------------------------------------------------
consensus_5829#0 AAAAAAAAAAAAAAAAAA 1038
consensus_5829#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||