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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5831#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1249 fasta sequence
[AAGGGGAGGGGCAGGAAGAAGGGAAGAATTGAAGAGGCTGAGGCTGTTGGATTGGAAACCGTTTCCAATTCTCCATCCTCTCTATCTTCCTCTCTTCCTTCTCCTCCGGTCCCTCTCTCTCTCCCCCCTCCATCTCCATCTCCTCTCTTGTATGTATGTATGTATCTTAATTGTTGCAGCTAGCTAAGAACATCAATCAAATTCAAATATTACATACATAAGCCTATTGATTGATTTGCTTGCTGCAGTTAGCCTACTTACGTGTATGCATGTCAAAACAAGACGAAATAACAACAGGCATGCATGTATGTATGCTTATTTTGCCGTGCTAGACGGCTTTTGATTCGTCTTCTTTGATGGGCATTCATCCCTTTCAGCTCCAACCCCTACAGTTGATGCTATGGTTGGGAATAGGATATGGTTTGGGGGCCTTTTCACCAGCTCAGGTAGAAGGCGCCAGATCAATGCTGAGAAGACCTTTGAGCTGAGCCCTGTTCAGGAGCAACGTTTGCAAAAGCTGAAGGAAAGACTAAATATACCTTATGATCAAACTCGGAGAGATCATCAGGAAGCTCTCAGGGCTCTGTGGAGTGCTTCATTTCCGGATGCAGAGCTGTCAAGCTTAATTTCAGAGCAGTGGAAGGACATGGGATGGCAGGGCCCAAACCCATCGACTGATTTCAGGGGCTGTGGATTTGTGGGACTTGAGAATCTTCTCTTCTTTGCAACAACATATC-----CGGCTTCTTACCAGAGGCTGCTTCTGAAGAAACAAGGGATGAGAGCCACATGGGAGTACCCCTTTGCAGTTGCTGGTGTTAACGTCTCATACATGTTGATCCAGCTGCTGGAGCTCAACGCAGAACGGCCCAAGTCTTTGCCAGGGATTAACTTTATCAAAGTGCTGTCAGAACACGAAGAGGCATTTGACGTCCTGTACTGTATAGCTTTCGAGATGATGGATGCCCAGTGGCTGGCAATGCGAGCATCCTACATGCAGTTCAAAGACGTGCTGGAAGCAACAAAGCAGCAGCTGGAGAGAGAGCTATCTCTGGAGGACGTCAATGGAATCCGTGACATACCAGCTTACAACCTTTTGTACAAGTAGCTAGCTAGGGGAGGCTCAAGAAAACATAAACAGAAACCTTCTTGTAAATTGCATATCAGCATGCATGTTTTATGTACTGCACCCAAGAGAGAAAAAGGCAGACTTTTACATTTATACACAATAATTTTATTTATACACACTTAT]
[+] EMBL AK069225 [AAGGGGAGGGGCAGGAAGAAGGGAAGAATTGAAGAGGCTGAGGCTGTTGGATTGGAAACCGTTTCCAATTCTCCATCCTCTCTATCTTCCTCTCTTCCTTCTCCTCCGGTCCCTCTCTCTCTCCCCCCTCCATCTCCATCTCCTCTCTTGTATGTATGTATGTATCTTAATTGTTGCAGCTAGCTAAGAACATCAATCAAATTCAAATATTACATACATAAGCCTATTGATTGATTTGCTTGCTGCAGTTAGCCTACTTACGTGTATGCATGTCAAAACAAGACGAAATAACAACAGGCATGCATGTATGTATGCTTATTTTGCCGTGCTAGACGGCTTTTGATTCGTCTTCTTTGATGGGCATTCATCCCTTTCAGCTCCAACCCCTACAGTTGATGCTATGGTTGGGAATAGGATATGGTTTGGGGGCCTTTTCACCAGCTCAGGTAGAAGGCGCCAGATCAATGCTGAGAAGACCTTTGAGCTGAGCCCTGTTCAGGAGCAACGTTTGCAAAAGCTGAAGGAAAGACTAAATATACCTTATGATCAAACTCGGAGAGATCATCAGGAAGCTCTCAGGGCTCTGTGGAGTGCTTCATTTCCGGATGCAGAGCTGTCAAGCTTAATTTCAGAGCAGTGGAAGGACATGGGATGGCAGGGCCCAAACCCATCGACTGATTTCAGGGGCTGTGGATTTGTGGGACTTGAGAATCTTCTCTTCTTTGCAACAACATATC CGGCTTCTTACCAGAGGCTGCTTCTGAAGAAACAAGGGATGAGAGCCACATGGGAGTACCCCTTTGCAGTTGCTGGTGTTAACGTCTCATACATGTTGATCCAGCTGCTGGAGCTCAACGCAGAACGGCCCAAGTCTTTGCCAGGGATTAACTTTATCAAAGTGCTGTCAGAACACGAAGAGGCATTTGACGTCCTGTACTGTATAGCTTTCGAGATGATGGATGCCCAGTGGCTGGCAATGCGAGCATCCTACATGCAGTTCAAAGACGTGCTGGAAGCAACAAAGCAGCAGCTGGAGAGAGAGCTATCTCTGGAGGACGTCAATGGAATCCGTGACATACCAGCTTACAACCTTTTGTACAAGTAGCTAGCTAGGGGAGGCTCAAGAAAACATAAACAGAAACCTTCTTGTAAATTGCATATCAGCATGCATGTTTTATGTACTGCACCCAAGAGAGAAAAAGGCAGACTTTTACATTTATACACAATAATTTTATTTATACACACTTAT]
[+] EMBL AU093826 [ AACTCGGAGAGATCATCAGGAAGCTCTCAGGGCTCTGTGGAGTGCTTCATTTCCGGATGCAGAGCTGTCAAGCTTAATTTCAGAGCAGTGGAAGGACATGGGATGGCAGGCCCCAAACCCATCGACTGATTTCAGGGGCTGTGGATTTGTGGGACTTGAGAATCTTCTCTTCTTTGCAACAACATATCCGGTACGGCTTCTTACCAGAGGCTGCTTCTGAAGAAACAAGGGATGAGAGCCACATGGGAGTACCCCTTTGCAGTTGCTGGTGTTAACGTCTCATACATGTTGATCCAGCTGCTGGAGCTCAACGCAGAACGGCCCAAGTCTTTGCCAGGGATTAACTTTATCAAAGTGCTGTCAGAACACGAAGAGGCATTTGACGTCCTGTACTGTATAGCTTTCGAGATGATGGATGCCCAGTGGCTGGCAATGCGAGCATCCTACATGCAGTTCAAAGACGTGCTGGAAGCAACAAAGCAGCAGCTGGAGAGAGAGCTATCTCTGGAGGACGTCAATGGAATCCGTGACATACCAGCTTACAACCTTTTGTACAAGTAGCTAGCTAGGGGAGGCTCAAGAAAACATAAACAGAAACCTTCTTGTAAATTGCATATCAGCATGCATGTTTTATGTACTGCACCCAAGAGAGAAAAAGGCAGACTTTTACATTTAaaaa ]
consensusID : consensus_5831#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence
[GGGAAGAATTGAAGAGGCTGAGGCTGTTGGATTGGAAACCGTTTCCAATTCTCCATCCTCTCTATCTTCCTCTCTTCCTTCTCCTCCGGTCCCTCTCTCTCTCCCCCCTCCATCTCCATCTCCTCTCTTGTATGTATTTAGCCTACTTACGTGTATGCATGTCAAAACAAGACGAAATAACAACAGGCATGCATGTATGTATGCTTATTTNGCCGTGCTAGACGGCTTTTGATTCGTCTTCTTTGATGGGCATTCATCCCTTTCAGCTCCAACCCCTACAGTTGATGCTATGGTTGGGAATAGGATATGGTTTNGGGGGCCTTTTCACCAGCTCAGGTAGGAAGGCGCCAAATCAATGCTGAGAAGACCTTTGAGCTGAGCCCTGTTCAGGTGAAGAGCACGTTTGNAAAGCTGAAGGGAAGCTTAATATACCTATGATCC]
[+] EMBL C71944 [GGGAAGAATTGAAGAGGCTGAGGCTGTTGGATTGGAAACCGTTTCCAATTCTCCATCCTCTCTATCTTCCTCTCTTCCTTCTCCTCCGGTCCCTCTCTCTCTCCCCCCTCCATCTCCATCTCCTCTCTTGTATGTATTTAGCCTACTTACGTGTATGCATGTCAAAACAAGACGAAATAACAACAGGCATGCATGTATGTATGCTTATTTNGCCGTGCTAGACGGCTTTTGATTCGTCTTCTTTGATGGGCATTCATCCCTTTCAGCTCCAACCCCTACAGTTGATGCTATGGTTGGGAATAGGATATGGTTTNGGGGGCCTTTTCACCAGCTCAGGTAGGAAGGCGCCAAATCAATGCTGAGAAGACCTTTGAGCTGAGCCCTGTTCAGGTGAAGAGCACGTTTGNAAAGCTGAAGGGAAGCTTAATATACCTATGATCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5831#0 AAGGGGAGGGGCAGGAAGAAGGGAAGAATTGAAGAGGCTGAGGCTGTTGGATTGGAAACC 60
consensus_5831#1 --------------------GGGAAGAATTGAAGAGGCTGAGGCTGTTGGATTGGAAACC 40
****************************************
consensus_5831#0 GTTTCCAATTCTCCATCCTCTCTATCTTCCTCTCTTCCTTCTCCTCCGGTCCCTCTCTCT 120
consensus_5831#1 GTTTCCAATTCTCCATCCTCTCTATCTTCCTCTCTTCCTTCTCCTCCGGTCCCTCTCTCT 100
************************************************************
consensus_5831#0 CTCCCCCCTCCATCTCCATCTCCTCTCTTGTATGTATGTATGTATCTTAATTGTTGCAGC 180
consensus_5831#1 CTCCCCCCTCCATCTCCATCTCCTCTCTTGTATGTAT----------------------- 137
*************************************
consensus_5831#0 TAGCTAAGAACATCAATCAAATTCAAATATTACATACATAAGCCTATTGATTGATTTGCT 240
consensus_5831#1 ------------------------------------------------------------
consensus_5831#0 TGCTGCAGTTAGCCTACTTACGTGTATGCATGTCAAAACAAGACGAAATAACAACAGGCA 300
consensus_5831#1 --------TTAGCCTACTTACGTGTATGCATGTCAAAACAAGACGAAATAACAACAGGCA 189
****************************************************
consensus_5831#0 TGCATGTATGTATGCTTATTTTGCCGTGCTAGACGGCTTTTGATTCGTCTTCTTTGATGG 360
consensus_5831#1 TGCATGTATGTATGCTTATTTNGCCGTGCTAGACGGCTTTTGATTCGTCTTCTTTGATGG 249
********************* **************************************
consensus_5831#0 GCATTCATCCCTTTCAGCTCCAACCCCTACAGTTGATGCTATGGTTGGGAATAGGATATG 420
consensus_5831#1 GCATTCATCCCTTTCAGCTCCAACCCCTACAGTTGATGCTATGGTTGGGAATAGGATATG 309
************************************************************
consensus_5831#0 GTTTGGGGG-CCTTTTCACCAGCTCAGGTAG-AAGGCGCCAGATCAATGCTGAGAAGACC 478
consensus_5831#1 GTTTNGGGGGCCTTTTCACCAGCTCAGGTAGGAAGGCGCCAAATCAATGCTGAGAAGACC 369
**** **** ********************* ********* ******************
consensus_5831#0 TTTGAGCTGAGCCCTGTTCAGGAGCA----ACGTTTGCAAAAGCTGAAGGAAAGACTAAA 534
consensus_5831#1 TTTGAGCTGAGCCCTGTTCAGGTGAAGAGCACGTTTGNAAA-GCTGAAGGGAAG-CTTAA 427
********************** * * ******* *** ******** *** ** **
consensus_5831#0 TATACCTTATGATCAAACTCGGAGAGATCATCAGGAAGCTCTCAGGGCTCTGTGGAGTGC 594
consensus_5831#1 TATACCT-ATGATCC--------------------------------------------- 441
******* ******
consensus_5831#0 TTCATTTCCGGATGCAGAGCTGTCAAGCTTAATTTCAGAGCAGTGGAAGGACATGGGATG 654
consensus_5831#1 ------------------------------------------------------------
consensus_5831#0 GCAGGGCCCAAACCCATCGACTGATTTCAGGGGCTGTGGATTTGTGGGACTTGAGAATCT 714
consensus_5831#1 ------------------------------------------------------------
consensus_5831#0 TCTCTTCTTTGCAACAACATATCCGGCTTCTTACCAGAGGCTGCTTCTGAAGAAACAAGG 774
consensus_5831#1 ------------------------------------------------------------
consensus_5831#0 GATGAGAGCCACATGGGAGTACCCCTTTGCAGTTGCTGGTGTTAACGTCTCATACATGTT 834
consensus_5831#1 ------------------------------------------------------------
consensus_5831#0 GATCCAGCTGCTGGAGCTCAACGCAGAACGGCCCAAGTCTTTGCCAGGGATTAACTTTAT 894
consensus_5831#1 ------------------------------------------------------------
consensus_5831#0 CAAAGTGCTGTCAGAACACGAAGAGGCATTTGACGTCCTGTACTGTATAGCTTTCGAGAT 954
consensus_5831#1 ------------------------------------------------------------
consensus_5831#0 GATGGATGCCCAGTGGCTGGCAATGCGAGCATCCTACATGCAGTTCAAAGACGTGCTGGA 1014
consensus_5831#1 ------------------------------------------------------------
consensus_5831#0 AGCAACAAAGCAGCAGCTGGAGAGAGAGCTATCTCTGGAGGACGTCAATGGAATCCGTGA 1074
consensus_5831#1 ------------------------------------------------------------
consensus_5831#0 CATACCAGCTTACAACCTTTTGTACAAGTAGCTAGCTAGGGGAGGCTCAAGAAAACATAA 1134
consensus_5831#1 ------------------------------------------------------------
consensus_5831#0 ACAGAAACCTTCTTGTAAATTGCATATCAGCATGCATGTTTTATGTACTGCACCCAAGAG 1194
consensus_5831#1 ------------------------------------------------------------
consensus_5831#0 AGAAAAAGGCAGACTTTTACATTTATACACAATAATTTTATTTATACACACTTAT 1249
consensus_5831#1 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||