These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5838#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 3032 fasta sequence [CCCCTCTGCCCCATCGATCACCAGTTCGCCGGCGGCTGCCTTCCTCTTCCCCGACCTGCGTTCTTCCCCACCCACCACCTGTGATTGTAGGGTTGCCCCGTGGTGGTTGCCGCTGATTATAGTCGTCGTCCAGCTATCTCCATCGGTCAGGCTGTCAGCGCGCTGGCCGTACCCAACAAGGCTCCCGATTGTTGCCCTGGTCGAGCGGCTGCCATCTGCCAGCCCGTCTGCTCTGGACGGCTGCCTCCATCCTCGGTTTTCTTCATTTGAATGATGTCAGCCTCTTCTGGGCCATCAACACCTAAACCAGCTCGCAAGCGCAGGCAACCCGAGAGAGCTTTTATACCTTCAGGTTAGCTCCAAGCCATATAAATTTTTATTTCTACATTTGAAACCATTTTCCTATTGAGCTCTCCTATTTGTCAACAAATGATTCTGTTGTGCCATATCTATTTCCTGGGGAATATTCCTAGCGATGGCGTTGTTCTGCTGGCTGATGACGCCCTCTCCCATGTTGGTGATTTCCCTACAAGTTTTCATTTGCCATCAAGGCGCTCTATACGTCGAAGACTACTTGCTCAGTCTGCTGGATTTCCCCACCCGGATCCTATAACAGCTGCTCAATCATGTCGAAAGCGTAAGCTCTCTATGGCTGCCAAATCATCTAGAGAAATTAATAGTACCACTGAAATGATAGAGCATCGGACGCATATCCATGTGCTACAACGGAATGTTCGACAACGAACCAGTCTATCTCAGTCATCCACCTTGGTTCCTATCAATTGTGGCCATACACAACCTTTTGCAACTGTCGATGGAGACCATTTGCTCATCAATTATCGTGGTTTTGCTGATGTGAACCTGATGCTCGACATGTCAAATCAGATCACTCATACAGTATGATGCTCGACCTGCTGTTCGACTCACTAATGCACTATTTTCTCTCCATCAAGGCTTGGGCCCCCATGTCACACTTGTCCATATTGTGGGGCTTTCTTTTGGTTTGAGGAGCGTGTCCGCCGAGAACAGCACAGCTCATCACCAATATACAATACATGCTGTAAAGGTGGGATTGTCATCTTACCTCCATATAGGCCACCCCCAGAACCTTTGCATAGTCTACTCACAGGAGTTAACAGATCATTGTCAGCCCATTTTTTTGAGAACATTAGGTTCTACAATTCGATGTTTGCCTTCACATCGATGGGTGTAAATGTCATTGATTCTATCAATGATGGACGAGGCCCATATGTTTTCAAGATTAGTGGCCAGCTCTGCCACTGCATTGGGTCACTCATACCAAAAGAAGGAAGACGACCAGAGTATGCTCAGTTATATATCTTTGACACAGAAAATGAGATTAGGAATAGGATGAATGTTGGAACCTATGCAAATAGGAGTTTTTGTCCTAATGAGGATATTGTGGCTGGACTTATAGACATGTTCAACACCCACAATCCTATTGTCCACCTATTTAGGACAGCTCGTGATAGATTGGCTGAAAATGGTGATGATCGATACATCATAAGATTATTTGGTGATCCCGACAAGCATGGTGATATATTTAGTGCTCCAGTTGCATCAGAGGTTGTTGGGTTAGTTGTTGGTGATGTAGGTATAAGTGATGTTGGCCATGACCTTATTGTGCAGGACCAAGCGGGTCATTTACAAAAAGTTGAAGAAAAGCATTGTAAATTTATGTCAATGCAATATCCAATTCTATTTCCATATGGGGAGGATGGCTATCATGAAAATATCACATACCGACGTTGTGCTCGATCACAAGCTATCAAAAGAAAGAAGGCTACTATGGTTGAATACTTTGCATATAGGCTTCATGACAGAGCTGATGACTTCAATACTCCTATGCGCTGCAAGAGAGGAACCTAGGCCTATGTCATAGATGCCTATTGTTGTATGGAAGAATCTCGCCTGAGTCACTGCAGATCCAAGACATTTCAGCTTAAGTATAGAACAGCTTCATTCAGTGAGGTATCCACTATGGTCCATTCAGGCATCACAGAAGCATCAGATGCCGGGCAGCGAGTTATATTGCCTTCTTCTTATATTGGGGGGCCAAGATATTTATATCAAAATTACTTAGATTCAGTTGCTCTATGTAGAAAATATGGTTGCCCTGATTTGTTTATCACTTTCACATCAAATTCCTTATGGTCAGAGGTAACACAAGCTTTGGCTATCATCCCTGGGCAACACTCAGCAGATAGGCCTGATATTATTAATCGTGTATTCCATGTTAAGCTACACCTCTTCATGGACGACATCGTAAAGAAGAAATTTTTTGGCCCTGTCACTGCAGTTGTGTACACAATTGAATTTCAGAAGCGTGGACTTCCACATGTTCACATCATATTGTGGTTAGATAAGAGTGGTCCGTTGACACCTGCTGATATTGACAGACTAATATCGGCACAGCTTCCAGATCCATCCATTGATCGAGTTGGTTATGATGCTGTTGCGGCATTCATGATGCATGGACCTTGTGGTGATGCAAATCCGCATTGTTCATGCATGGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTCTGAGAAAACAACAATCCTGCCAAATGGCCATGTAAGGTATGCTCGGCCAAAAAATGATATAATTGTTGCCAAAAATAGAATTTCTCTTGATAATCGGCATGTTGTCCCCCACAACATCGATTTATTAGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGAAAAGTATCTATTCAAATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTAGTCTCAAGCGCAAGCGGGCATGTGCTGGAACTAATGAGATTCATGACTATTTAGAATGTAGATGTATAGCGCCGAATGAGGCGGCATGGCGTTTAAATGTAGATGTATAGCGCCGAATGAGGCGGCATGGCGTTTACTTCAGTTTGAGATTCATTATACTGATCCTGCTATTGAGCGTCTCCATGTACATATGCCATTAGAGAATAATGTTACATTCACAGAGGAT] [+] EMBL AK070196 [CCCCTCTGCCCCATCGATCACCAGTTCGCCGGCGGCTGCCTTCCTCTTCCCCGACCTGCGTTCTTCCCCACCCACCACCTGTGATTGTAGGGTTGCCCCGTGGTGGTTGCCGCTGATTATAGTCGTCGTCCAGCTATCTCCATCGGTCAGGCTGTCAGCGCGCTGGCCGTACCCAACAAGGCTCCCGATTGTTGCCCTGGTCGAGCGGCTGCCATCTGCCAGCCCGTCTGCTCTGGACGGCTGCCTCCATCCTCGGTTTTCTTCATTTGAATGATGTCAGCCTCTTCTGGGCCATCAACACCTAAACCAGCTCGCAAGCGCAGGCAACCCGAGAGAGCTTTTATACCTTCAGGTTAGCTCCAAGCCATATAAATTTTTATTTCTACATTTGAAACCATTTTCCTATTGAGCTCTCCTATTTGTCAACAAATGATTCTGTTGTGCCATATCTATTTCCTGGGGAATATTCCTAGCGATGGCGTTGTTCTGCTGGCTGATGACGCCCTCTCCCATGTTGGTGATTTCCCTACAAGTTTTCATTTGCCATCAAGGCGCTCTATACGTCGAAGACTACTTGCTCAGTCTGCTGGATTTCCCCACCCGGATCCTATAACAGCTGCTCAATCATGTCGAAAGCGTAAGCTCTCTATGGCTGCCAAATCATCTAGAGAAATTAATAGTACCACTGAAATGATAGAGCATCGGACGCATATCCATGTGCTACAACGGAATGTTCGACAACGAACCAGTCTATCTCAGTCATCCACCTTGGTTCCTATCAATTGTGGCCATACACAACCTTTTGCAACTGTCGATGGAGACCATTTGCTCATCAATTATCGTGGTTTTGCTGATGTGAACCTGATGCTCGACATGTCAAATCAGATCACTCATACAGTATGATGCTCGACCTGCTGTTCGACTCACTAATGCACTATTTTCTCTCCATCAAGGCTTGGGCCCCCATGTCACACTTGTCCATATTGTGGGGCTTTCTTTTGGTTTGAGGAGCGTGTCCGCCGAGAACAGCACAGCTCATCACCAATATACAATACATGCTGTAAAGGTGGGATTGTCATCTTACCTCCATATAGGCCACCCCCAGAACCTTTGCATAGTCTACTCACAGGAGTTAACAGATCATTGTCAGCCCATTTTTTTGAGAACATTAGGTTCTACAATTCGATGTTTGCCTTCACATCGATGGGTGTAAATGTCATTGATTCTATCAATGATGGACGAGGCCCATATGTTTTCAAGATTAGTGGCCAGCTCTGCCACTGCATTGGGTCACTCATACCAAAAGAAGGAAGACGACCAGAGTATGCTCAGTTATATATCTTTGACACAGAAAATGAGATTAGGAATAGGATGAATGTTGGAACCTATGCAAATAGGAGTTTTTGTCCTAATGAGGATATTGTGGCTGGACTTATAGACATGTTCAACACCCACAATCCTATTGTCCACCTATTTAGGACAGCTCGTGATAGATTGGCTGAAAATGGTGATGATCGATACATCATAAGATTATTTGGTGATCCCGACAAGCATGGTGATATATTTAGTGCTCCAGTTGCATCAGAGGTTGTTGGGTTAGTTGTTGGTGATGTAGGTATAAGTGATGTTGGCCATGACCTTATTGTGCAGGACCAAGCGGGTCATTTACAAAAAGTTGAAGAAAAGCATTGTAAATTTATGTCAATGCAATATCCAATTCTATTTCCATATGGGGAGGATGGCTATCATGAAAATATCACATACCGACGTTGTGCTCGATCACAAGCTATCAAAAGAAAGAAGGCTACTATGGTTGAATACTTTGCATATAGGCTTCATGACAGAGCTGATGACTTCAATACTCCTATGCGCTGCAAGAGAGGAACCTAGGCCTATGTCATAGATGCCTATTGTTGTATGGAAGAATCTCGCCTGAGTCACTGCAGATCCAAGACATTTCAGCTTAAGTATAGAACAGCTTCATTCAGTGAGGTATCCACTATGGTCCATTCAGGCATCACAGAAGCATCAGATGCCGGGCAGCGAGTTATATTGCCTTCTTCTTATATTGGGGGGCCAAGATATTTATATCAAAATTACTTAGATTCAGTTGCTCTATGTAGAAAATATGGTTGCCCTGATTTGTTTATCACTTTCACATCAAATTCCTTATGGTCAGAGGTAACACAAGCTTTGGCTATCATCCCTGGGCAACACTCAGCAGATAGGCCTGATATTATTAATCGTGTATTCCATGTTAAGCTACACCTCTTCATGGACGACATCGTAAAGAAGAAATTTTTTGGCCCTGTCACTGCAGTTGTGTACACAATTGAATTTCAGAAGCGTGGACTTCCACATGTTCACATCATATTGTGGTTAGATAAGAGTGGTCCGTTGACACCTGCTGATATTGACAGACTAATATCGGCACAGCTTCCAGATCCATCCATTGATCGAGTTGGTTATGATGCTGTTGCGGCATTCATGATGCATGGACCTTGTGGTGATGCAAATCCGCATTGTTCATGCATGGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTCTGAGAAAACAACAATCCTGCCAAATGGCCATGTAAGGTATGCTCGGCCAAAAAATGATATAATTGTTGCCAAAAATAGAATTTCTCTTGATAATCGGCATGTTGTCCCCCACAACATCGATTTATTAGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGAAAAGTATCTATTCAAATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTAGTCTCAAGCGCAAGCGGGCATGTGCTGGAACTAATGAGATTCATGACTATTTAGAATGTAGATGTATAGCGCCGAATGAGGCGGCATGGCGTTTAAATGTAGATGTATAGCGCCGAATGAGGCGGCATGGCGTTTACTTCAGTTTGAGATTCATTATACTGATCCTGCTATTGAGCGTCTCCATGTACATATGCCATTAGAGAATAATGTTACATTCACAGAGGAT] consensusID : consensus_5838#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2911 fasta sequence [TTTTTTCTCTATACTGCTCTTTGTTGCTGTTGGATGCCAATCTTGCTTTCTTTCAGTTTGAGTCACCGAGACAATGCCCAGGCTGATCAATCTTTGCTGTTGTTAACAGCCAAAACATGAATCTATTTCCCTATGCTTCCTTGCGATAGTTAGGCTGAGTGAATACTACCAAGTTTGAATGATGTCAGTCTCTTCTGGGCCATCAACACCTAAACCAGCTTGCAAGCGCAGGCAACCCGAGAGAGCTTTTATACCTTCAGATGATTCTGTTGTGCCATATCTATTTCCTAGGGAATATTCCTAGCGATGGCGTTGTTCTGCTGGCTGATGACGCCCTCTCCCATGTTTGTGATTTCCCTACAAGTTTTCATTTGCCATCAAGGCGCTCTATACGTCGAAGACTACTTACTCAGTCTGCTGGATTTCCCCACCCGGATCCTGTAACAGCTGCTCAATCACGTCGAAAGCGTAAGCTTGCTATGGCTGCCAAATCATCTAGAGAAATTAATAGTACCACTGAAATGATAGAGCATCGGACGCATATCCATGTGCTACAACGGAATGTTCGACAACGAACCGGTCTGTCTCAGTCATCCACCTTGGTTCCTATCAATTGTGGCCATACACAACCTTTTGCAACTGTCGATGGAGCATGTTCATCGTCGACCTCTTCAGCCCTATTGTCTCCATCTCCCACACATCAACACCATTTGCTCATCAATTCTCGCGGTTTTGCTGATGTAAACCTGATGCTCGACATGTCAAATCAGATCACTCATACAGTATGATGCTCGACTTGCTGTTCGACTCACTAATGCACTATTTTCTCTCCATCAAGGCTTGGGCCCCCATGTCACACTTGTCCATATTGTGGGGCTTTCTTTTGGTTTGAGGAGCGTGTCCGCCGAGAACAGCACAGCTCATCACCAATATACAATACATGTTGTAAAGGTGGGAGTGTCATCTTACCTCCATATAGGCCACCCCCAGAACCTTTGCATAGTCTACTCACAGGAGTTAACAGATCATTGTCAGCCCATTTTTTTAGAACATTAGGTTCTACAATTCGATGTTTGCCTTCACATCGATGGGTGTAAATGTCATTGATTCTATCAATGATGGACGAGGCCCATATGTTTTCAAGATTAGTGGCCAGCTCTGCCATCGCATTGGGTCACTCATACCAGAAGAAGGAAGACGACCAGAGTATGCTCACTTATATATCTTTGACACAGAAAATGAGATCAGGAATAGGATAAATGTTGGAACCTATGCAAATAGGAGTTTTCGTCCTAATGAGGATATTGTGGCTGGACTTATAGACATGTTCAACACCCACAATCCTATTGTCCACCTATTTAGGACAGCTCGTGATAGATTGGCTGAAAATGGTGATGATTGATACATCATAAGATTATTTGGTGATCCCGACAAGCATGGTGATATATTTAGTGCTCCAGTTGCATCGGAGGTTGTTGGGTTAGTTGTTGGTGATGTAGGTATAAGTGATGTTGGCCGTGACCTTATTGTGCAGGACCAAGCGGGTCATTTACAAAAAGTTGAAGAAAAGCATTGTAAATTTATGTCAATGCAATATCCAATTCTATTTCCATATGGGGAGGATGGCTATCATGAAAATATCACATACCGACGTTGTGCTCGATTACAAGCTATCAAAAGAAAGAAGTCTACTATGGTTGAATACTTTGCATATAGGCTTCATGACAAAGCTGATGACTTCAATACTCCTATGCGCTGCAAGAGAGGAACCCAGGCCTATGTCATAGATGCCTATTGTTGTATGGAAGAATCTCGCCTGAGTCACTATAGATCCAAGACATTTCAGCTTAAGTATAGAACAACTTCATTTAGTGAGGTATCCACTATGGTCCATTCAGGCATCACAGAAGCATCAGATGCCGGGCAGCAAGTTATATTGCCTTCTTCTTATATTGGGGGGGGGGCAAGATATTTATATCAAAATTACTTAGATTCAGTTGCTCTATGTAGAAAATATGGTTGCCCTGATTTGTTTATCACTTTCACATCAAATTCCTTATGGTCAGAGGTAACACAAGCTTTGGCTATCATCCCTGGGCAACACTCAGCAGATAGGCCTGATATTATTAATCGTGTATTCCATGTTAAGCTGCATCTCTTCATGGACGACATCGTAAAGAAGAAATTTTTTGGCCCTGTCACTGCAGTTGTGTACACAATTGAATTTCAGAAGCGTGGACTTCCACATGTTCACATCATATTGTGGTTAGATAAGAGTGGTCCATTGACACCTGCTGATATTGACAGACTAATATCGGCCCAGCTTCCAGATCCATCCATTGATCGAGTTGGTTATGATGCTGTTGCGGCATTCATGATGCATGGACCTTGTGGTGATGCAAATCCGCATTGTTCATGCATGGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTATGAGAAAACAACAATCCTGCCAAATGGCCGTGTAAGGTATGCTCGGCCAAAAAATGATATAATTGTTGCGAAAAATGGAATTTCTCTTGATAATTGGCATGTTGTCCCCCACAACGTCGATTTATTAGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGAAAAGTATCTATTCAAATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTGGTCTCAAGCGCAAGCGGGCATGTGCTGGAACTAATGAGATTCATGACTATTTAGAATGTAGATGTATAGCGCCGAATGAGGCGGCATGGCGTTTGCTTTAGTTTGAGATTCATTATACTGATCCTGCTATTGAGCGTCCATGTACATATGCCATTAGAGAATAATGTTACATTCACAGAGGATGATAATCTGGAACAGATCTTGGATAACCCACGCAA] [+] EMBL AK120244 [TTTTTTCTCTATACTGCTCTTTGTTGCTGTTGGATGCCAATCTTGCTTTCTTTCAGTTTGAGTCACCGAGACAATGCCCAGGCTGATCAATCTTTGCTGTTGTTAACAGCCAAAACATGAATCTATTTCCCTATGCTTCCTTGCGATAGTTAGGCTGAGTGAATACTACCAAGTTTGAATGATGTCAGTCTCTTCTGGGCCATCAACACCTAAACCAGCTTGCAAGCGCAGGCAACCCGAGAGAGCTTTTATACCTTCAGATGATTCTGTTGTGCCATATCTATTTCCTAGGGAATATTCCTAGCGATGGCGTTGTTCTGCTGGCTGATGACGCCCTCTCCCATGTTTGTGATTTCCCTACAAGTTTTCATTTGCCATCAAGGCGCTCTATACGTCGAAGACTACTTACTCAGTCTGCTGGATTTCCCCACCCGGATCCTGTAACAGCTGCTCAATCACGTCGAAAGCGTAAGCTTGCTATGGCTGCCAAATCATCTAGAGAAATTAATAGTACCACTGAAATGATAGAGCATCGGACGCATATCCATGTGCTACAACGGAATGTTCGACAACGAACCGGTCTGTCTCAGTCATCCACCTTGGTTCCTATCAATTGTGGCCATACACAACCTTTTGCAACTGTCGATGGAGCATGTTCATCGTCGACCTCTTCAGCCCTATTGTCTCCATCTCCCACACATCAACACCATTTGCTCATCAATTCTCGCGGTTTTGCTGATGTAAACCTGATGCTCGACATGTCAAATCAGATCACTCATACAGTATGATGCTCGACTTGCTGTTCGACTCACTAATGCACTATTTTCTCTCCATCAAGGCTTGGGCCCCCATGTCACACTTGTCCATATTGTGGGGCTTTCTTTTGGTTTGAGGAGCGTGTCCGCCGAGAACAGCACAGCTCATCACCAATATACAATACATGTTGTAAAGGTGGGAGTGTCATCTTACCTCCATATAGGCCACCCCCAGAACCTTTGCATAGTCTACTCACAGGAGTTAACAGATCATTGTCAGCCCATTTTTTTAGAACATTAGGTTCTACAATTCGATGTTTGCCTTCACATCGATGGGTGTAAATGTCATTGATTCTATCAATGATGGACGAGGCCCATATGTTTTCAAGATTAGTGGCCAGCTCTGCCATCGCATTGGGTCACTCATACCAGAAGAAGGAAGACGACCAGAGTATGCTCACTTATATATCTTTGACACAGAAAATGAGATCAGGAATAGGATAAATGTTGGAACCTATGCAAATAGGAGTTTTCGTCCTAATGAGGATATTGTGGCTGGACTTATAGACATGTTCAACACCCACAATCCTATTGTCCACCTATTTAGGACAGCTCGTGATAGATTGGCTGAAAATGGTGATGATTGATACATCATAAGATTATTTGGTGATCCCGACAAGCATGGTGATATATTTAGTGCTCCAGTTGCATCGGAGGTTGTTGGGTTAGTTGTTGGTGATGTAGGTATAAGTGATGTTGGCCGTGACCTTATTGTGCAGGACCAAGCGGGTCATTTACAAAAAGTTGAAGAAAAGCATTGTAAATTTATGTCAATGCAATATCCAATTCTATTTCCATATGGGGAGGATGGCTATCATGAAAATATCACATACCGACGTTGTGCTCGATTACAAGCTATCAAAAGAAAGAAGTCTACTATGGTTGAATACTTTGCATATAGGCTTCATGACAAAGCTGATGACTTCAATACTCCTATGCGCTGCAAGAGAGGAACCCAGGCCTATGTCATAGATGCCTATTGTTGTATGGAAGAATCTCGCCTGAGTCACTATAGATCCAAGACATTTCAGCTTAAGTATAGAACAACTTCATTTAGTGAGGTATCCACTATGGTCCATTCAGGCATCACAGAAGCATCAGATGCCGGGCAGCAAGTTATATTGCCTTCTTCTTATATTGGGGGGGGGGCAAGATATTTATATCAAAATTACTTAGATTCAGTTGCTCTATGTAGAAAATATGGTTGCCCTGATTTGTTTATCACTTTCACATCAAATTCCTTATGGTCAGAGGTAACACAAGCTTTGGCTATCATCCCTGGGCAACACTCAGCAGATAGGCCTGATATTATTAATCGTGTATTCCATGTTAAGCTGCATCTCTTCATGGACGACATCGTAAAGAAGAAATTTTTTGGCCCTGTCACTGCAGTTGTGTACACAATTGAATTTCAGAAGCGTGGACTTCCACATGTTCACATCATATTGTGGTTAGATAAGAGTGGTCCATTGACACCTGCTGATATTGACAGACTAATATCGGCCCAGCTTCCAGATCCATCCATTGATCGAGTTGGTTATGATGCTGTTGCGGCATTCATGATGCATGGACCTTGTGGTGATGCAAATCCGCATTGTTCATGCATGGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTATGAGAAAACAACAATCCTGCCAAATGGCCGTGTAAGGTATGCTCGGCCAAAAAATGATATAATTGTTGCGAAAAATGGAATTTCTCTTGATAATTGGCATGTTGTCCCCCACAACGTCGATTTATTAGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGAAAAGTATCTATTCAAATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTGGTCTCAAGCGCAAGCGGGCATGTGCTGGAACTAATGAGATTCATGACTATTTAGAATGTAGATGTATAGCGCCGAATGAGGCGGCATGGCGTTTGCTTTAGTTTGAGATTCATTATACTGATCCTGCTATTGAGCGTCCATGTACATATGCCATTAGAGAATAATGTTACATTCACAGAGGATGATAATCTGGAACAGATCTTGGATAACCCACGCAA] consensusID : consensus_5838#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [TCCGCATTGTTCATGCATAGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTGTGAGAAAACAACAATCCTGCCAAATGGCCATATAAGGTATGCTCGGCCAAAAAATGATATAATTGTTGCCAAAAATGGAATTTCTCTTGATAATCGGCATGTTGTCCCCCACAACGTCGATTTATTAGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGAAAAGTATCTATTCCCATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTGGTCTCAAGCGCAAGCGGGCATGTGCTGGAACTAATGAGATTCATGATTATTTAGAATGTAGATGTATAGCGTAGAATGAGTAGGAATGAAGTTTGATTTAGTAGATGCCCCCCCTCTCCGAGTAAAAGTGGAAAGGGAGTCTAGAATAGGGGGGAATCTACTGGTATAAGGGCGAAAAGCCGGCGGCGGTGTTGCCCCCGATTATTGTACATTTAAACATACTTACACGCTTGTTTA] [-] EMBL BE040288 [TCCGCATTGTTCATGCATAGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTGTGAGAAAACAACAATCCTGCCAAATGGCCATATAAGGTATGCTCGGCCAAAAAATGATATAATTGTTGCCAAAAATGGAATTTCTCTTGATAATCGGCATGTTGTCCCCCACAACGTCGATTTATTAGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGAAAAGTATCTATTCCCATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTGGTCTCAAGCGCAAGCGGGCATGTGCTGGAACTAATGAGATTCATGATTATTTAGAATGTAGATGTATAGCGTAGAATGAGTAGGAATGAAGTTTGATTTAGTAGATGCCCCCCCTCTCCGAGTAAAAGTGGAAAGGGAGTCTAGAATAGGGGGGAATCTACTGGTATAAGGGCGAAAAGCCGGCGGCGGTGTTGCCCCCGATTATTGTACATTTAAACATACTTACACGCTTGTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5838#0 CCCCTCTGCCCCATCGATCACCAGTTCGCCGGCGGCTGCCTTCCTCTTCCCCGACCTGCG 60 consensus_5838#1 ------------------------------------------------------------ consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 TTCTTCCCCACCCACCACCTGTGATTGTAGGGTTGCCCCGTGGTGGTTGCCGCTGATTAT 120 consensus_5838#1 -----------------------------TTTTTTCTCTATACTGCTCTTTGTTGCTGTT 31 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 AGTCGTCG-TCCAGCTATCTCCATCGGTCAGGCTGTCAGCGCGCTGGCCGTACCCAACAA 179 consensus_5838#1 GGATGCCAATCTTGCTTTCTTT-CAGTTTGAGTCACCGAGACAATGCCCAGGCTGATCAA 90 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 GGCTCCCGATTGTTGCCCTGGTCGAGCGGCTGCCATCTGCCAGCCCGTCTGCTCTGGACG 239 consensus_5838#1 TCTTTGCTGTTGTTAAC--AGCCAAAACATGAATCTATTTCCCTATGCTTCCTTGCGATA 148 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 GCTGCCTCCATCCTCGGTTTTCTTCATTTGAATGATGTCAGCCTCTTCTGGGCCATCAAC 299 consensus_5838#1 GTTAGGCTGAGTGAATACTACCAA-GTTTGAATGATGTCAGTCTCTTCTGGGCCATCAAC 207 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 ACCTAAACCAGCTCGCAAGCGCAGGCAACCCGAGAGAGCTTTTATACCTTCAGGTTAGCT 359 consensus_5838#1 ACCTAAACCAGCTTGCAAGCGCAGGCAACCCGAGAGAGCTTTTATACCTTCAG------- 260 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 CCAAGCCATATAAATTTTTATTTCTACATTTGAAACCATTTTCCTATTGAGCTCTCCTAT 419 consensus_5838#1 ------------------------------------------------------------ consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 TTGTCAACAAATGATTCTGTTGTGCCATATCTATTTCCTGGGGAATATTCCTAGCGATGG 479 consensus_5838#1 ----------ATGATTCTGTTGTGCCATATCTATTTCCTAGGGAATATTCCTAGCGATGG 310 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 CGTTGTTCTGCTGGCTGATGACGCCCTCTCCCATGTTGGTGATTTCCCTACAAGTTTTCA 539 consensus_5838#1 CGTTGTTCTGCTGGCTGATGACGCCCTCTCCCATGTTTGTGATTTCCCTACAAGTTTTCA 370 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 TTTGCCATCAAGGCGCTCTATACGTCGAAGACTACTTGCTCAGTCTGCTGGATTTCCCCA 599 consensus_5838#1 TTTGCCATCAAGGCGCTCTATACGTCGAAGACTACTTACTCAGTCTGCTGGATTTCCCCA 430 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 CCCGGATCCTATAACAGCTGCTCAATCATGTCGAAAGCGTAAGCTCTCTATGGCTGCCAA 659 consensus_5838#1 CCCGGATCCTGTAACAGCTGCTCAATCACGTCGAAAGCGTAAGCTTGCTATGGCTGCCAA 490 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 ATCATCTAGAGAAATTAATAGTACCACTGAAATGATAGAGCATCGGACGCATATCCATGT 719 consensus_5838#1 ATCATCTAGAGAAATTAATAGTACCACTGAAATGATAGAGCATCGGACGCATATCCATGT 550 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 GCTACAACGGAATGTTCGACAACGAACCAGTCTATCTCAGTCATCCACCTTGGTTCCTAT 779 consensus_5838#1 GCTACAACGGAATGTTCGACAACGAACCGGTCTGTCTCAGTCATCCACCTTGGTTCCTAT 610 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 CAATTGTGGCCATACACAACCTTTTGCAACTGTCGATGGAG------------------- 820 consensus_5838#1 CAATTGTGGCCATACACAACCTTTTGCAACTGTCGATGGAGCATGTTCATCGTCGACCTC 670 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 -----------------------------------ACCATTTGCTCATCAATTATCGTGG 845 consensus_5838#1 TTCAGCCCTATTGTCTCCATCTCCCACACATCAACACCATTTGCTCATCAATTCTCGCGG 730 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 TTTTGCTGATGTGAACCTGATGCTCGACATGTCAAATCAGATCACTCATACAGTATGATG 905 consensus_5838#1 TTTTGCTGATGTAAACCTGATGCTCGACATGTCAAATCAGATCACTCATACAGTATGATG 790 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 CTCGACCTGCTGTTCGACTCACTAATGCACTATTTTCTCTCCATCAAGGCTTGGGCCCCC 965 consensus_5838#1 CTCGACTTGCTGTTCGACTCACTAATGCACTATTTTCTCTCCATCAAGGCTTGGGCCCCC 850 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 ATGTCACACTTGTCCATATTGTGGGGCTTTCTTTTGGTTTGAGGAGCGTGTCCGCCGAGA 1025 consensus_5838#1 ATGTCACACTTGTCCATATTGTGGGGCTTTCTTTTGGTTTGAGGAGCGTGTCCGCCGAGA 910 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 ACAGCACAGCTCATCACCAATATACAATACATGCTGTAAAGGTGGGATTGTCATCTTACC 1085 consensus_5838#1 ACAGCACAGCTCATCACCAATATACAATACATGTTGTAAAGGTGGGAGTGTCATCTTACC 970 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 TCCATATAGGCCACCCCCAGAACCTTTGCATAGTCTACTCACAGGAGTTAACAGATCATT 1145 consensus_5838#1 TCCATATAGGCCACCCCCAGAACCTTTGCATAGTCTACTCACAGGAGTTAACAGATCATT 1030 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 GTCAGCCCATTTTTTTGAGAACATTAGGTTCTACAATTCGATGTTTGCCTTCACATCGAT 1205 consensus_5838#1 GTCAGCCCATTTTTTT-AGAACATTAGGTTCTACAATTCGATGTTTGCCTTCACATCGAT 1089 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 GGGTGTAAATGTCATTGATTCTATCAATGATGGACGAGGCCCATATGTTTTCAAGATTAG 1265 consensus_5838#1 GGGTGTAAATGTCATTGATTCTATCAATGATGGACGAGGCCCATATGTTTTCAAGATTAG 1149 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 TGGCCAGCTCTGCCACTGCATTGGGTCACTCATACCAAAAGAAGGAAGACGACCAGAGTA 1325 consensus_5838#1 TGGCCAGCTCTGCCATCGCATTGGGTCACTCATACCAGAAGAAGGAAGACGACCAGAGTA 1209 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 TGCTCAGTTATATATCTTTGACACAGAAAATGAGATTAGGAATAGGATGAATGTTGGAAC 1385 consensus_5838#1 TGCTCACTTATATATCTTTGACACAGAAAATGAGATCAGGAATAGGATAAATGTTGGAAC 1269 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 CTATGCAAATAGGAGTTTTTGTCCTAATGAGGATATTGTGGCTGGACTTATAGACATGTT 1445 consensus_5838#1 CTATGCAAATAGGAGTTTTCGTCCTAATGAGGATATTGTGGCTGGACTTATAGACATGTT 1329 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 CAACACCCACAATCCTATTGTCCACCTATTTAGGACAGCTCGTGATAGATTGGCTGAAAA 1505 consensus_5838#1 CAACACCCACAATCCTATTGTCCACCTATTTAGGACAGCTCGTGATAGATTGGCTGAAAA 1389 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 TGGTGATGATCGATACATCATAAGATTATTTGGTGATCCCGACAAGCATGGTGATATATT 1565 consensus_5838#1 TGGTGATGATTGATACATCATAAGATTATTTGGTGATCCCGACAAGCATGGTGATATATT 1449 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 TAGTGCTCCAGTTGCATCAGAGGTTGTTGGGTTAGTTGTTGGTGATGTAGGTATAAGTGA 1625 consensus_5838#1 TAGTGCTCCAGTTGCATCGGAGGTTGTTGGGTTAGTTGTTGGTGATGTAGGTATAAGTGA 1509 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 TGTTGGCCATGACCTTATTGTGCAGGACCAAGCGGGTCATTTACAAAAAGTTGAAGAAAA 1685 consensus_5838#1 TGTTGGCCGTGACCTTATTGTGCAGGACCAAGCGGGTCATTTACAAAAAGTTGAAGAAAA 1569 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 GCATTGTAAATTTATGTCAATGCAATATCCAATTCTATTTCCATATGGGGAGGATGGCTA 1745 consensus_5838#1 GCATTGTAAATTTATGTCAATGCAATATCCAATTCTATTTCCATATGGGGAGGATGGCTA 1629 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 TCATGAAAATATCACATACCGACGTTGTGCTCGATCACAAGCTATCAAAAGAAAGAAGGC 1805 consensus_5838#1 TCATGAAAATATCACATACCGACGTTGTGCTCGATTACAAGCTATCAAAAGAAAGAAGTC 1689 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 TACTATGGTTGAATACTTTGCATATAGGCTTCATGACAGAGCTGATGACTTCAATACTCC 1865 consensus_5838#1 TACTATGGTTGAATACTTTGCATATAGGCTTCATGACAAAGCTGATGACTTCAATACTCC 1749 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 TATGCGCTGCAAGAGAGGAACCTAGGCCTATGTCATAGATGCCTATTGTTGTATGGAAGA 1925 consensus_5838#1 TATGCGCTGCAAGAGAGGAACCCAGGCCTATGTCATAGATGCCTATTGTTGTATGGAAGA 1809 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 ATCTCGCCTGAGTCACTGCAGATCCAAGACATTTCAGCTTAAGTATAGAACAGCTTCATT 1985 consensus_5838#1 ATCTCGCCTGAGTCACTATAGATCCAAGACATTTCAGCTTAAGTATAGAACAACTTCATT 1869 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 CAGTGAGGTATCCACTATGGTCCATTCAGGCATCACAGAAGCATCAGATGCCGGGCAGCG 2045 consensus_5838#1 TAGTGAGGTATCCACTATGGTCCATTCAGGCATCACAGAAGCATCAGATGCCGGGCAGCA 1929 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 AGTTATATTGCCTTCTTCTTATATTGGGGGGC---CAAGATATTTATATCAAAATTACTT 2102 consensus_5838#1 AGTTATATTGCCTTCTTCTTATATTGGGGGGGGGGCAAGATATTTATATCAAAATTACTT 1989 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 AGATTCAGTTGCTCTATGTAGAAAATATGGTTGCCCTGATTTGTTTATCACTTTCACATC 2162 consensus_5838#1 AGATTCAGTTGCTCTATGTAGAAAATATGGTTGCCCTGATTTGTTTATCACTTTCACATC 2049 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 AAATTCCTTATGGTCAGAGGTAACACAAGCTTTGGCTATCATCCCTGGGCAACACTCAGC 2222 consensus_5838#1 AAATTCCTTATGGTCAGAGGTAACACAAGCTTTGGCTATCATCCCTGGGCAACACTCAGC 2109 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 AGATAGGCCTGATATTATTAATCGTGTATTCCATGTTAAGCTACACCTCTTCATGGACGA 2282 consensus_5838#1 AGATAGGCCTGATATTATTAATCGTGTATTCCATGTTAAGCTGCATCTCTTCATGGACGA 2169 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 CATCGTAAAGAAGAAATTTTTTGGCCCTGTCACTGCAGTTGTGTACACAATTGAATTTCA 2342 consensus_5838#1 CATCGTAAAGAAGAAATTTTTTGGCCCTGTCACTGCAGTTGTGTACACAATTGAATTTCA 2229 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 GAAGCGTGGACTTCCACATGTTCACATCATATTGTGGTTAGATAAGAGTGGTCCGTTGAC 2402 consensus_5838#1 GAAGCGTGGACTTCCACATGTTCACATCATATTGTGGTTAGATAAGAGTGGTCCATTGAC 2289 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 ACCTGCTGATATTGACAGACTAATATCGGCACAGCTTCCAGATCCATCCATTGATCGAGT 2462 consensus_5838#1 ACCTGCTGATATTGACAGACTAATATCGGCCCAGCTTCCAGATCCATCCATTGATCGAGT 2349 consensus_5838#2 ------------------------------------------------------------ consensus_5838#0 TGGTTATGATGCTGTTGCGGCATTCATGATGCATGGACCTTGTGGTGATGCAAATCCGCA 2522 consensus_5838#1 TGGTTATGATGCTGTTGCGGCATTCATGATGCATGGACCTTGTGGTGATGCAAATCCGCA 2409 consensus_5838#2 ------------------------------------------------------TCCGCA 6 ****** consensus_5838#0 TTGTTCATGCATGGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTCTGAGAA 2582 consensus_5838#1 TTGTTCATGCATGGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTATGAGAA 2469 consensus_5838#2 TTGTTCATGCATAGTTGACGGTAAATGCTCAAAGAATTACCCGAAGGAATATTGTGAGAA 66 ************ **************************************** ****** consensus_5838#0 AACAACAATCCTGCCAAATGGCCATGTAAGGTATGCTCGGCCAAAAAATGATATAATTGT 2642 consensus_5838#1 AACAACAATCCTGCCAAATGGCCGTGTAAGGTATGCTCGGCCAAAAAATGATATAATTGT 2529 consensus_5838#2 AACAACAATCCTGCCAAATGGCCATATAAGGTATGCTCGGCCAAAAAATGATATAATTGT 126 *********************** * ********************************** consensus_5838#0 TGCCAAAAATAGAATTTCTCTTGATAATCGGCATGTTGTCCCCCACAACATCGATTTATT 2702 consensus_5838#1 TGCGAAAAATGGAATTTCTCTTGATAATTGGCATGTTGTCCCCCACAACGTCGATTTATT 2589 consensus_5838#2 TGCCAAAAATGGAATTTCTCTTGATAATCGGCATGTTGTCCCCCACAACGTCGATTTATT 186 *** ****** ***************** ******************** ********** consensus_5838#0 AGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGAAAAGTA 2762 consensus_5838#1 AGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGAAAAGTA 2649 consensus_5838#2 AGTCAAATATGAGGCGCATATCAACGTGGAAAGAGTTAATCGTGATGGAATGGAAAAGTA 246 ************************************************************ consensus_5838#0 TCTATTCAAATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTAGTCTCAAGCGCAAGCG 2822 consensus_5838#1 TCTATTCAAATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTGGTCTCAAGCGCAAGCG 2709 consensus_5838#2 TCTATTCCCATATGTTGCTAAGGGTTTTGATTGTTCGAGGGTTGGTCTCAAGCGCAAGCG 306 ******* ********************************** **************** consensus_5838#0 GGCATGTGCTGGAACTAATGAGATTCATGACTATTTAGAATGTAGATGTATAGCGCCGAA 2882 consensus_5838#1 GGCATGTGCTGGAACTAATGAGATTCATGACTATTTAGAATGTAGATGTATAGCGCCGAA 2769 consensus_5838#2 GGCATGTGCTGGAACTAATGAGATTCATGATTATTTAGAATGTAGATGTATAGCGTAGAA 366 ****************************** ************************ *** consensus_5838#0 TGAGGCGGCATGGCGTTTAAAT--GTAGATGTATAGCGCCGAATGAGGCGGCATGGCGTT 2940 consensus_5838#1 TGAGGCGGCATGGC-------------------------------------------GTT 2786 consensus_5838#2 TGAGTAGGAATGAAGTTTGATTTAGTAGATGCCCCCCCTCTCCGAGTAAAAGTGGAAAGG 426 **** ** *** consensus_5838#0 TACTTCAGTTTGAGATTCATTATACTGATCCTGCTATTGAGCGTCTCCATGTACATATGC 3000 consensus_5838#1 TGCTTTAGTTTGAGATTCATTATACTGATCCTGCTATTGAGCGTC--CATGTACATATGC 2844 consensus_5838#2 GAGTCTAGAATAGGGGGGAATCTACTGGTATAAGGGCGAAAAGCC----GGCGGCGGTGT 482 * ** * * * * ***** * * * * * ** consensus_5838#0 CATTAGAGAATAATGTTACATTCACAGAGGAT---------------------------- 3032 consensus_5838#1 CATTAGAGAATAATGTTACATTCACAGAGGATGATAATCTGGAACAGATCTTGGATAACC 2904 consensus_5838#2 TGCCCCCGATTATTGT-ACATTTAAACATACTTACACGCTTGTTTA-------------- 527 ** ** *** ***** * * * * consensus_5838#0 ------- consensus_5838#1 CACGCAA 2911 consensus_5838#2 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||