These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5839#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 679 fasta sequence [CNTGCCAAAATGGTTACATTTACGGTATCCCGCCCTTCTACAGTCCCCTTTTTGGACACAGAAAATNCCAAAGGGAAGACAAGAAAGTNCCTTGTTGATGGAAGATGGACCCTTGCTTTTAGAGATGAGCAATCATGTAAGGAAGCAGAGACTATGGTTATAGAGGAGATGAAGCTCCAACAAGGTGCTNTTGGAGAACAGTTGAAGCTATTGCTTGAATTTGACATGCCTGAGGATGGATTACAGCATCCTTGCTCCTCTCATGAAACCACTTCGGATGATGGGTCATGACTTGCTAGAACATCATCGATGATCGCTCATGCCTTACTGGAGGTTTCATCATGTGCAGTGTTCGAGCTTTGAAAACATGGTGGCAGGAAAACCCCGTCGCTGCCATCTCCGACGAGCAAGTCGGTCACGCTCTGTACATTACATCGGCAGATTTAGGGAGGTCCCCTTGTTGACACACTGTAGAGTTTCGAGTTTTGACTGTTTTTGAGTTAAGTTAGCTCGATAGGATTCTTTGTACAATAGTTTGTACCTGTCCTTTGTAATGTCATACAAATCACATTCCATTCTTTCATAAGCTTCAGGGCAGAGTTGGGCTGTGTACACTAATTGTTTGAAGAAATGTGCAGGCAATCATATCTGTTGTCAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU093850 [CNTGCCAAAATGGTTACATTTACGGTATCCCGCCCTTCTACAGTCCCCTTTTTGGACACAGAAAATNCCAAAGGGAAGACAAGAAAGTNCCTTGTTGATGGAAGATGGACCCTTGCTTTTAGAGATGAGCAATCATGTAAGGAAGCAGAGACTATGGTTATAGAGGAGATGAAGCTCCAACAAGGTGCTNTTGGAGAACAGTTGAAGCTATTGCTTGAATTTGACATGCCTGAGGATGGATTACAGCATCCTTGCTCCTCTCATGAAACCACTTCGGATGATGGGTCATGACTTGCTAGAACATCATCGATGATCGCTCATGCCTTACTGGAGGTTTCATCATGTGCAGTGTTCGAGCTTTGAAAACATGGTGGCAGGAAAACCCCGTCGCTGCCATCTCCGACGAGCAAGTCGGTCACGCTCTGTACATTACATCGGCAGATTTAGGGAGGTCCCCTTGTTGACACACTGTAGAGTTTCGAGTTTTGACTGTTTTTGAGTTAAGTTAGCTCGATAGGATTCTTTGTACAATAGTTTGTACCTGTCCTTTGTAATGTCATACAAATCACATTCCATTCTTTCATAAGCTTCAGGGCAGAGTTGGGCTGTGTACACTAATTGTTTGAAGAAATGTGCAGGCAATCATATCTGTTGTCAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA882899 [ TCGGCAGATTTAGGGAGGTCCCCTTGTTGACACACTGTAGAGTTTCGAGTTTTGACTGTTTTTGAGTTAAGTTAGCTCGATAG ] consensusID : consensus_5839#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence [ATCGCTCATCGCCTTACTGGAGGTTTCATCATGTCCAGTGTTCGAGCTTTTGAAAACCTGGTGCCAGGAAACCCCGTCGCGTGCCATTTCCGACGAGCACAGTCGGTCACCTCTCTGTACCTTACATCGGCAGATTTAGGGAGGTCCCCTTGTGGACACACTGTAGAGTTTCGAGTTTTGACTGTTTTTGAGTTAAGTTAGCTCGATAGGATTCTTTGTACCATAGTTTGTACCTGTCCTTTGTAATGTCATACAAATCACATTCCATTCTTTCATAAGCTTCAGGCAGAGTTGGGCTGTGTACACCTAATTGTTTGAAGAAATGTCAGGCAATCATATCTGTTGTCAAAAGGATGCCCTGACTATAGTAATAAAATATGAATTTTGAGCTCCCAAAAAAAAAA] [+] EMBL BI807975 [ATCGCTCATCGCCTTACTGGAGGTTTCATCATGTCCAGTGTTCGAGCTTTTGAAAACCTGGTGCCAGGAAACCCCGTCGCGTGCCATTTCCGACGAGCACAGTCGGTCACCTCTCTGTACCTTACATCGGCAGATTTAGGGAGGTCCCCTTGTGGACACACTGTAGAGTTTCGAGTTTTGACTGTTTTTGAGTTAAGTTAGCTCGATAGGATTCTTTGTACCATAGTTTGTACCTGTCCTTTGTAATGTCATACAAATCACATTCCATTCTTTCATAAGCTTCAGGCAGAGTTGGGCTGTGTACACCTAATTGTTTGAAGAAATGTCAGGCAATCATATCTGTTGTCAAAAGGATGCCCTGACTATAGTAATAAAATATGAATTTTGAGCTCCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5839#0 CNTGCCAAAATGGTTACATTTACGGTATCCCGCCCTTCTACAGTCCCCTTTTTGGACACA 60 consensus_5839#1 ------------------------------------------------------------ consensus_5839#0 GAAAATNCCAAAGGGAAGACAAGAAAGTNCCTTGTTGATGGAAGATGGACCCTTGCTTTT 120 consensus_5839#1 ------------------------------------------------------------ consensus_5839#0 AGAGATGAGCAATCATGTAAGGAAGCAGAGACTATGGTTATAGAGGAGATGAAGCTCCAA 180 consensus_5839#1 ------------------------------------------------------------ consensus_5839#0 CAAGGTGCTNTTGGAGAACAGTTGAAGCTATTGCTTGAATTTGACATGCCTGAGGATGGA 240 consensus_5839#1 ------------------------------------------------------------ consensus_5839#0 TTACAGCATCCTTGCTCCTCTCATGAAACCACTTCGGATGATGGGTCATGACTTGCTAGA 300 consensus_5839#1 ------------------------------------------------------------ consensus_5839#0 ACATCATCGATGATCGCTCAT-GCCTTACTGGAGGTTTCATCATGTGCAGTGTTCGAGCT 359 consensus_5839#1 ------------ATCGCTCATCGCCTTACTGGAGGTTTCATCATGTCCAGTGTTCGAGCT 48 ********* ************************ ************* consensus_5839#0 TT-GAAAACATGGTGGCAGGAAAACCCCGTCGC-TGCCATCTCCGACGAGCA-AGTCGGT 416 consensus_5839#1 TTTGAAAACCTGGTGCCAGGAAA-CCCCGTCGCGTGCCATTTCCGACGAGCACAGTCGGT 107 ** ****** ***** ******* ********* ****** *********** ******* consensus_5839#0 CACG-CTCTGTACATTACATCGGCAGATTTAGGGAGGTCCCCTTGTTGACACACTGTAGA 475 consensus_5839#1 CACCTCTCTGTACCTTACATCGGCAGATTTAGGGAGGTCCCCTTGTGGACACACTGTAGA 167 *** ******** ******************************** ************* consensus_5839#0 GTTTCGAGTTTTGACTGTTTTTGAGTTAAGTTAGCTCGATAGGATTCTTTGTACAATAGT 535 consensus_5839#1 GTTTCGAGTTTTGACTGTTTTTGAGTTAAGTTAGCTCGATAGGATTCTTTGTACCATAGT 227 ****************************************************** ***** consensus_5839#0 TTGTACCTGTCCTTTGTAATGTCATACAAATCACATTCCATTCTTTCATAAGCTTCAGGG 595 consensus_5839#1 TTGTACCTGTCCTTTGTAATGTCATACAAATCACATTCCATTCTTTCATAAGCTTCAGG- 286 *********************************************************** consensus_5839#0 CAGAGTTGGGCTGTGTACAC-TAATTGTTTGAAGAAATGTGCAGGCAATCATATCTGTTG 654 consensus_5839#1 CAGAGTTGGGCTGTGTACACCTAATTGTTTGAAGAAATGT-CAGGCAATCATATCTGTTG 345 ******************** ******************* ******************* consensus_5839#0 TCAAAAAAA------AAAAAAAAAAAAAAAA---------------------------- 679 consensus_5839#1 TCAAAAGGATGCCCTGACTATAGTAATAAAATATGAATTTTGAGCTCCCAAAAAAAAAA 404 ****** * * * * ** **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||