These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5843#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1814 fasta sequence [CCCGACGACGCCGCTTCCCCAATTCCGGCTCCGGCGGCGAGCAGCTGGCTGCGGACGCGCCGTCAAAACCCCAGGAGGATGTGGATCTCCGGTGTACTCTCCGCGGCATGCCGGCATCGGCGGCGCGAAGATTCTGCACCGGCTTAGATCGACGGCGCCCCTCGCCGCGGGGCTTTCGTGGAGAGCAGCCAATTGTCTGAAGATGTGAATATCAAGATTCCAAATGACTAGCGACAAGATCATGTATGTGCAGACGACCCCTGAGGCTGAACCAAACTCATCCAGGCATGGCATGGGGAAAAAACAGACCATAGCTCATCCCGGCATGAACGAAGAACCCGACATTTTGCATATTTTTTCTGATGCTCTGGATTCATGCTAACGATGGCCAGAAGCTGCACCTAGAAGCAGAAGCTTAACAGGTGGCACAAACGGCAGTTGAAGCTTGACTCCAATTAGAAGTCATGATAGTTTTTCTGTTGCTACTTGGACTGGAAGAGCTGGTGTGCCAGGGCACCATCCTCTGTGTTCTTGAAGTTTAAGTCAACACCTCAATAGGCACTGGTTTAATGAGCTCTTCTCAGCCATCACAAACTTCGAATAGCAGGGCCAAAGTCTGACAAACTTTTAGTTAGGATACCTGGAATGTGAGGAGCTGCTTCAGATGCACTTGAACTTCCCTTTGCAATTCGCTACAAAGAAAAAGATAAAGAGGATCTGGAACATCAGCTCAACCTGGGACTGGCTTCCAATCACACACCAAGTTCATCATAGAAAGGCCATGCATCAAGCTCTTCTACTAGGAACATTATTATTCAGTCTCAGTCCTAATTCGCCAATGTGCACCTTCAGTCTTGAGCCAGCTCTGCAAGCAATAACTGAACATTTAAAGAACTGCATTTTGTGCAGCGATATGGTGCGGTTTCAGAATCTGTTGAAGGAAATAGCAGTGTTGTAAAGATGCACAAATGGTGCAACATGGGTGCTCAAACCTGACTACCGTTAATGTGTTTATCTGCACCTTGGACGGCAGAGGGGAACCTCTCTATTTAGACCTGAAGAGTCATTGCAAAGAGTCATTACTGGACAGTCTTATTTGGTAGAAGGAGAATGGCCTCATGCAAGAAGAGTGTTCTCTTTGTTGTCTCTGAACCTGCCTGTCTAGGATGCCCATCTTGGTACCCAGTTGGCACCTTGCAAGGACGTTGCAATATTGTTTGGAAAACAACCTCATCATTCTCAAATATTTTGCAATGTAGTGTATGCATGCAGCAAGATGGACACAACACAAATCGATGAAACCAGCCTCAGTGAGAGTCCGAGCTGGCCGAGGGTCAGCCTCCAAATTAAAAAAATATTTTTTTCCTGGTCTTTGGAATGCCAAGACGATGGAGATGCAGGCAATCCTGACCGTTCATTTTTTCACGTGTCAGCACAGGAGCCCTCTAGATTGGGCCGGTGTTTTCCGTTACCAGTGCCTTTCAGCTCATGGGCCACGGCCAGCAATTGTTCCAACTGCCACTTTTGGGGCCCATTCCGTTGGGTGCGTGCCCAAGGTGATCCGGACATGTGGGCCCCTCTCGTGGTAGAAACCCTTGAACAACCGATCAAGATCAGCTCAAAATCGAATCAGCATGGGAACAAAGGAAGAGAGATGCATGGATGTAGTTTAATTTGCTCCTAATCTTATCTTAGCCACGTAGCATGTGTACGGTTTGATGTGTGTCCACAGATGGGAGAATTTACTAATCATAAAACATGAAGTGGTACCGATTGCCTCTATAAAATTATGGGGAAAATTCCAAATACCTCTA] [+] EMBL AK109597 [CCCGACGACGCCGCTTCCCCAATTCCGGCTCCGGCGGCGAGCAGCTGGCTGCGGACGCGCCGTCAAAACCCCAGGAGGATGTGGATCTCCGGTGTACTCTCCGCGGCATGCCGGCATCGGCGGCGCGAAGATTCTGCACCGGCTTAGATCGACGGCGCCCCTCGCCGCGGGGCTTTCGTGGAGAGCAGCCAATTGTCTGAAGATGTGAATATCAAGATTCCAAATGACTAGCGACAAGATCATGTATGTGCAGACGACCCCTGAGGCTGAACCAAACTCATCCAGGCATGGCATGGGGAAAAAACAGACCATAGCTCATCCCGGCATGAACGAAGAACCCGACATTTTGCATATTTTTTCTGATGCTCTGGATTCATGCTAACGATGGCCAGAAGCTGCACCTAGAAGCAGAAGCTTAACAGGTGGCACAAACGGCAGTTGAAGCTTGACTCCAATTAGAAGTCATGATAGTTTTTCTGTTGCTACTTGGACTGGAAGAGCTGGTGTGCCAGGGCACCATCCTCTGTGTTCTTGAAGTTTAAGTCAACACCTCAATAGGCACTGGTTTAATGAGCTCTTCTCAGCCATCACAAACTTCGAATAGCAGGGCCAAAGTCTGACAAACTTTTAGTTAGGATACCTGGAATGTGAGGAGCTGCTTCAGATGCACTTGAACTTCCCTTTGCAATTCGCTACAAAGAAAAAGATAAAGAGGATCTGGAACATCAGCTCAACCTGGGACTGGCTTCCAATCACACACCAAGTTCATCATAGAAAGGCCATGCATCAAGCTCTTCTACTAGGAACATTATTATTCAGTCTCAGTCCTAATTCGCCAATGTGCACCTTCAGTCTTGAGCCAGCTCTGCAAGCAATAACTGAACATTTAAAGAACTGCATTTTGTGCAGCGATATGGTGCGGTTTCAGAATCTGTTGAAGGAAATAGCAGTGTTGTAAAGATGCACAAATGGTGCAACATGGGTGCTCAAACCTGACTACCGTTAATGTGTTTATCTGCACCTTGGACGGCAGAGGGGAACCTCTCTATTTAGACCTGAAGAGTCATTGCAAAGAGTCATTACTGGACAGTCTTATTTGGTAGAAGGAGAATGGCCTCATGCAAGAAGAGTGTTCTCTTTGTTGTCTCTGAACCTGCCTGTCTAGGATGCCCATCTTGGTACCCAGTTGGCACCTTGCAAGGACGTTGCAATATTGTTTGGAAAACAACCTCATCATTCTCAAATATTTTGCAATGTAGTGTATGCATGCAGCAAGATGGACACAACACAAATCGATGAAACCAGCCTCAGTGAGAGTCCGAGCTGGCCGAGGGTCAGCCTCCAAATTAAAAAAATATTTTTTTCCTGGTCTTTGGAATGCCAAGACGATGGAGATGCAGGCAATCCTGACCGTTCATTTTTTCACGTGTCAGCACAGGAGCCCTCTAGATTGGGCCGGTGTTTTCCGTTACCAGTGCCTTTCAGCTCATGGGCCACGGCCAGCAATTGTTCCAACTGCCACTTTTGGGGCCCATTCCGTTGGGTGCGTGCCCAAGGTGATCCGGACATGTGGGCCCCTCTCGTGGTAGAAACCCTTGAACAACCGATCAAGATCAGCTCAAAATCGAATCAGCATGGGAACAAAGGAAGAGAGATGCATGGATGTAGTTTAATTTGCTCCTAATCTTATCTTAGCCACGTAGCATGTGTACGGTTTGATGTGTGTCCACAGATGGGAGAATTTACTAATCATAAAACATGAAGTGGTACCGATTGCCTCTATAAAATTATGGGGAAAATTCCAAATACCTCTA] consensusID : consensus_5843#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 838 fasta sequence [TTCTTCTCAGCCATCAGAAACTTCAAATAGCACGGCCAAAGTCTGCAAACTTTTAGGTAGGATGCACTTAGAACATCTCTTGCATATTCGCTACAAAGAAAAAGATGATCTAGGGACTAGCTTCTAATCACACACCAAGTTTATCATAGAAAGGTCATGCATCAAGCTCTTCTACTAGGAACATTATCATGCAACCTCAAGTCCTAATTTACCAATATGCACCTTCAGGCTTCAGCCAGCTCAACAAGCATTAACCAGGCATTTCAAGAACTCCATTATGTCCAAGGATATGCTGCTATTTAAGAATCTGCTGAAGGAAATAGCAATGTTGCAAAGATGCAAAAATGATGCAACATGGATGCTCAAACCTTACTACCAGTAATTTTAGCTGTACTTGAGTGGAACAATATTTGGCTAGGTCTGGTGTGCTGCATAAATTAGTTTCATTCAGATAGGACATGCAAATTAGAGATAGGGGGAATGTTTCCAACATCTTTTTGAAACCTTTTGGCATTGCTGACTGATTCTTTTTGTAAGAAAGGAACAAATCTGAAACAAGAGCATGTTAGGTGACATGTGGCAAATAGATGAATACAAACATTTATCACCGGAAGGATTGGTGGCGATTTTTTTTTTCAAAACAAACTTGTGGGAGGACTGCGGCAATTCGTTCTTCCCCCAACTTGTAGTGTTATACACGAAACATGATAGGCATGTTGAAGCATGAAAATACGTCCTTCACACTTTGTTTTTTCCTCATTTTTTAGATTTCCAGCTGCAACAAATTTGGTGCAAAATTGCTTATGGGGACCTGGTTGGACTGCTGAAAAGAAGCTCA] [+] EMBL CB631299 [TTCTTCTCAGCCATCAGAAACTTCAAATAGCACGGCCAAAGTCTGCAAACTTTTAGGTAGGATGCACTTAGAACATCTCTTGCATATTCGCTACAAAGAAAAAGATGATCTAGGGACTAGCTTCTAATCACACACCAAGTTTATCATAGAAAGGTCATGCATCAAGCTCTTCTACTAGGAACATTATCATGCAACCTCAAGTCCTAATTTACCAATATGCACCTTCAGGCTTCAGCCAGCTCAACAAGCATTAACCAGGCATTTCAAGAACTCCATTATGTCCAAGGATATGCTGCTATTTAAGAATCTGCTGAAGGAAATAGCAATGTTGCAAAGATGCAAAAATGATGCAACATGGATGCTCAAACCTTACTACCAGTAATTTTAGCTGTACTTGAGTGGAACAATATTTGGCTAGGTCTGGTGTGCTGCATAAATTAGTTTCATTCAGATAGGACATGCAAATTAGAGATAGGGGGAATGTTTCCAACATCTTTTTGAAACCTTTTGGCATTGCTGACTGATTCTTTTTGTAAGAAAGGAACAAATCTGAAACAAGAGCATGTTAGGTGACATGTGGCAAATAGATGAATACAAACATTTATCACCGGAAGGATTGGTGGCGATTTTTTTTTTCAAAACAAACTTGTGGGAGGACTGCGGCAATTCGTTCTTCCCCCAACTTGTAGTGTTATACACGAAACATGATAGGCATGTTGAAGCATGAAAATACGTCCTTCACACTTTGTTTTTTCCTCATTTTTTAGATTTCCAGCTGCAACAAATTTGGTGCAAAATTGCTTATGGGGACCTGGTTGGACTGCTGAAAAGAAGCTCA] consensusID : consensus_5843#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence [ACGAAAATTAAATAAAGATTGTTGTTTGAGCTTCCTTTCAGCAGTCCAACCAGGTCCCCATAAGCAATTTTGCACCAAATTTGTTGCAGCTGGAAATCTAAAAAATGNGGAAAAAACAAAGTGTGAAGGACGTATTTTCATGCTTCAACATGCCTATCATGTTTNNTGTATAACACTACAAGTTGGGGGAAGAANNNATTGCCGNNNNCCTCCCACAAGTTTGTTTTGAAAAAAAAAATNGCNNCCAATCCTTCCNNNNNNNNNNNTTTGTATTCATCTNTTTGN] [+] EMBL CF197246 [ACGAAAATTAAATAAAGATTGTTGTTTGAGCTTCCTTTCAGCAGTCCAACCAGGTCCCCATAAGCAATTTTGCACCAAATTTGTTGCAGCTGGAAATCTAAAAAATGNGGAAAAAACAAAGTGTGAAGGACGTATTTTCATGCTTCAACATGCCTATCATGTTTNNTGTATAACACTACAAGTTGGGGGAAGAANNNATTGCCGNNNNCCTCCCACAAGTTTGTTTTGAAAAAAAAAATNGCNNCCAATCCTTCCNNNNNNNNNNNTTTGTATTCATCTNTTTGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5843#0 CCCGACGACGCCGCTTCCCCAATTCCGGCTCCGGCGGCGAGCAGCTGGCTGCGGACGCGC 60 consensus_5843#1 ------------------------------------------------------------ consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 CGTCAAAACCCCAGGAGGATGTGGATCTCCGGTGTACTCTCCGCGGCATGCCGGCATCGG 120 consensus_5843#1 ------------------------------------------------------------ consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 CGGCGCGAAGATTCTGCACCGGCTTAGATCGACGGCGCCCCTCGCCGCGGGGCTTTCGTG 180 consensus_5843#1 ------------------------------------------------------------ consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 GAGAGCAGCCAATTGTCTGAAGATGTGAATATCAAGATTCCAAATGACTAGCGACAAGAT 240 consensus_5843#1 ------------------------------------------------------------ consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 CATGTATGTGCAGACGACCCCTGAGGCTGAACCAAACTCATCCAGGCATGGCATGGGGAA 300 consensus_5843#1 ------------------------------------------------------------ consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 AAAACAGACCATAGCTCATCCCGGCATGAACGAAGAACCCGACATTTTGCATATTTTTTC 360 consensus_5843#1 ------------------------------------------------------------ consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 TGATGCTCTGGATTCATGCTAACGATGGCCAGAAGCTGCACCTAGAAGCAGAAGCTTAAC 420 consensus_5843#1 ------------------------------------------------------------ consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 AGGTGGCACAAACGGCAGTTGAAGCTTGACTCCAATTAGAAGTCATGATAGTTTTTCTGT 480 consensus_5843#1 ------------------------------------------------------------ consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 TGCTACTTGGACTGGAAGAGCTGGTGTGCCAGGGCACCATCCTCTGTGTTCTTGAAGTTT 540 consensus_5843#1 ------------------------------------------------------------ consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 AAGTCAACACCTCAATAGGCACTGGTTTAATGAGCTCTTCTCAGCCATCACAAACTTCGA 600 consensus_5843#1 ----------------------------------TTCTTCTCAGCCATCAGAAACTTCAA 26 consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 ATAGCAGGGCCAAAGTCTGACAAACTTTTAGTTAGGATACCTGGAATGTGAGGAGCTGCT 660 consensus_5843#1 ATAGCACGGCCAAAGTCTG-CAAACTTTTAGGTAGGAT---------------------- 63 consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 TCAGATGCACTTGAACTTCCCTTTGCA-ATTCGCTACAAAGAAAAAGATAAAGAGGATCT 719 consensus_5843#1 ------GCACTTAGAACATCTCTTGCATATTCGCTACAAAGAAAAAGAT------GATCT 111 consensus_5843#2 ------------------------------ACGAAAATTAAATAAAGATT-----GTTGT 25 ** * * * ****** * * * consensus_5843#0 GGAACATCAGCTCAACCTGGGACTGGCTTCCAATCACACACCAAGTTCATCATAGAAAGG 779 consensus_5843#1 AG-----------------GGACTAGCTTCTAATCACACACCAAGTTTATCATAGAAAGG 154 consensus_5843#2 TT-----------------GAGCTTCCTTTCAGCAGTCCAACCAGGTCCCCATA-AGCAA 67 * ** *** * ** * ** * **** * consensus_5843#0 CCATGCATCAAGCTC-TTCTACTAGGAACATTATTATTCAGTCTCA-GTCCTAATTCGCC 837 consensus_5843#1 TCATGCATCAAGCTC-TTCTACTAGGAACATTATCATGCAACCTCAAGTCCTAATTTACC 213 consensus_5843#2 TTTTGCACCAAATTTGTTGCAGCTGGAAATCTAAAAAATGNGGAAAAAACAAAGTGTGA- 126 **** *** * ** * **** ** * * * * * consensus_5843#0 AATGTGCACCTTCAGTCTTGAGCCAGCTCTGCAAGCAATAACTG-AACATTTAAAGAACT 896 consensus_5843#1 AATATGCACCTTCAGGCTTCAGCCAGCTCAACAAGCATTAACCA-GGCATTTCAAGAACT 272 consensus_5843#2 AGGACGTATTTTCATGCTTCAACATGCCTATCATGTTTNNTGTATAACACTACAAGTTGG 186 * * * **** *** * * ** ** * ** * *** consensus_5843#0 GCATTTTGTGCAGCGATATGGTGCGGTTTCAGAATCTGTTGAAGGAAATAGCAGTGTTGT 956 consensus_5843#1 CCATTATGTCCAAGGATATGCTGCTATTTAAGAATCTGCTGAAGGAAATAGCAATGTTGC 332 consensus_5843#2 GGGAAGAANNNATTGCCGNNNNCCT-CCCACAAGTTTGTTTTGAAAAAAAAAATNGCNNC 245 * * * * * ** * *** * * * consensus_5843#0 AAAGATGCACAAATGGTGCAACATGGGTGCTCAAACCTGACTACCGTTAATGTGTTTATC 1016 consensus_5843#1 AAAGATGCAAAAATGATGCAACATGGATGCTCAAACCTTACTACCAGTAAT---TTTAGC 389 consensus_5843#2 CAATCCTTCCNNNNNNNNNNNTTTGTATTCATCTNTTTGN-------------------- 285 ** ** * * * consensus_5843#0 TGCACCTTGGACGGCAGAGGGGAACCTCTCTATTTAGACCTGAAGAGTCATTGCAAAGAG 1076 consensus_5843#1 TGTAC-TTGAGTGGAACAA-------TATTTGGCTAGGTCTGGTGTGC---TGCATAAAT 438 consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 TCATTACTGGACAGTCTTATTTGGTAGAAGGAGAATGGCCTCATGCAAGAAGAGTGTTCT 1136 consensus_5843#1 T-----------AGTTTCATTCAGATAGGACATGCAAATTAGAGATAGGGGGAATGTTTC 487 consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 CTTTGTTGTCTCTGAACCTGCCTGTCTAGGATGCCCATCTTGGTACCCAGTTGGCACCTT 1196 consensus_5843#1 CAACATCTTTTTGAAACCT-----TTTGGCAT--------TGCTGACTGATT--CTTTTT 532 consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 GCAAGGACGTTGCAATATTGTTTGGAAAACAACCTCATCATTCTCAAATATTTTGCAATG 1256 consensus_5843#1 GTAAGAAAGGAACAA----ATCTGAAACAAGAGCATGTTAGGT---GACATGTGGCAAAT 585 consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 TAGTGTATGCATGCAGCAAGATGGACACAACACAAATCGATGAAACCAGCCTCAGTGAGA 1316 consensus_5843#1 AGATGAATACAAACATTTAT-----CACCGGAAGGATTGGTGGCGATTTTTTTTTTCAAA 640 consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 GTCCGAGCTGGCCGAGGGTCAGCCTCCAAATTAAAAAAATATTTTTTTCCTGGTCTTTGG 1376 consensus_5843#1 A--CAAACTTGTGGGAGGACTGCGGC--AATT-------CGTTCTTCCCCCAA--CTTGT 687 consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 AATGCCAAGACGATGGAGATGCAGGCAATCCTGACCGTTCATTTTTTCACGTGTCAGCAC 1436 consensus_5843#1 AGTGTTA------------TACACG-AAACATGATAGG-CATGTTGAAGCATGAAAATAC 733 consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 AGGAGCCCTCTAGATTGGGCCGGTGTTTTCCGTTACCAGTGCCTTTCAGCTCATGGGCCA 1496 consensus_5843#1 ----GTCCTTCACACTTTGT-----TTTTTCCTCATT------TTTTAGATTTCCAGCTG 778 consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 CGGCCAGCAATTGTTCCAACTGCCACTTTTGGGGCCCATTCCGTTGGGTGCGTGCCCAAG 1556 consensus_5843#1 CAACAAAT--TTGGTGCAAA-ATTGCTTATGGGGACC---TGGTTGGAC---TGCTGAAA 829 consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 GTGATCCGGACATGTGGGCCCCTCTCGTGGTAGAAACCCTTGAACAACCGATCAAGATCA 1616 consensus_5843#1 AGAAGCTCA--------------------------------------------------- 838 consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 GCTCAAAATCGAATCAGCATGGGAACAAAGGAAGAGAGATGCATGGATGTAGTTTAATTT 1676 consensus_5843#1 ------------------------------------------------------------ consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 GCTCCTAATCTTATCTTAGCCACGTAGCATGTGTACGGTTTGATGTGTGTCCACAGATGG 1736 consensus_5843#1 ------------------------------------------------------------ consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 GAGAATTTACTAATCATAAAACATGAAGTGGTACCGATTGCCTCTATAAAATTATGGGGA 1796 consensus_5843#1 ------------------------------------------------------------ consensus_5843#2 ------------------------------------------------------------ consensus_5843#0 AAATTCCAAATACCTCTA 1814 consensus_5843#1 ------------------ consensus_5843#2 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||