cluster # 5857

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Oryza sativa
cluster # 5857 cluster # 5857 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5857#0 length = 800 sequences # 1

consensus_5857#1 length = 565 sequences # 1
consensus_5857#2 length = 200 sequences # 1

consensusID : consensus_5857#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 800
fasta sequence

                              [TTGTACAATAGTTTATCTCGCGTAATGAACTACATGTCCTACTCTCGTAATAATACGAGAGGAGCAAATGTTCACGGTAGGAATGTTGATACATTATTTGAGAATATTTGACAAAAAAGACTGACAAAAACAGTACTGTTAGCGATTGTTTGGAGAGAAAAAAACAGCTACAAACACATATTCCTTGCCGGATCGGACAAAGGTTGGTACGGAGTACAGTATATGGCAACGGTAATTGTCAACAGTATTGAAGACGCGCGGTTGTTTTCAATAAACCATTCCCGGTAAGTTGTATGCCCCTTCAGAAGTGGTTTTGGAAGGAATAGGTTTACTACTGTATAGCAGTGTACTATCTGGTCGTTGGATGATTTATTCTATTGTTAATTATTTTTGGAGAATGCTATAGAACGATATCCCGTTCGGACAAGATAATACCTCTGAGGTATCACCTGATACCTGGTAGGTATCCGCTGGTACCCTGTTCGGTCGAAATGATACGTCTAAGGTATCAGCTGATACCTGATAGGTATCGACTGGTACCTAGGTATTAAGCAATACCTATCATTCCTCTATTATTTTCTATGGATCAGTATTAAAGAACCGACATAATTAAATATAGAGTAGTCTAACTTAAACATAATTATAATTTTGGAAAATATCTATGTACAAACTAATCTACACAACCATGCAAAAAGATATATCGAAACGTAAACCCTAGGTGATCAACGTACAAAACACTATTACAATATGCCTGCCAGTTATACTATAACTATATGTATTATGCAACCTTATTAGGTCAC]

[+] EMBL CB663200             [TTGTACAATAGTTTATCTCGCGTAATGAACTACATGTCCTACTCTCGTAATAATACGAGAGGAGCAAATGTTCACGGTAGGAATGTTGATACATTATTTGAGAATATTTGACAAAAAAGACTGACAAAAACAGTACTGTTAGCGATTGTTTGGAGAGAAAAAAACAGCTACAAACACATATTCCTTGCCGGATCGGACAAAGGTTGGTACGGAGTACAGTATATGGCAACGGTAATTGTCAACAGTATTGAAGACGCGCGGTTGTTTTCAATAAACCATTCCCGGTAAGTTGTATGCCCCTTCAGAAGTGGTTTTGGAAGGAATAGGTTTACTACTGTATAGCAGTGTACTATCTGGTCGTTGGATGATTTATTCTATTGTTAATTATTTTTGGAGAATGCTATAGAACGATATCCCGTTCGGACAAGATAATACCTCTGAGGTATCACCTGATACCTGGTAGGTATCCGCTGGTACCCTGTTCGGTCGAAATGATACGTCTAAGGTATCAGCTGATACCTGATAGGTATCGACTGGTACCTAGGTATTAAGCAATACCTATCATTCCTCTATTATTTTCTATGGATCAGTATTAAAGAACCGACATAATTAAATATAGAGTAGTCTAACTTAAACATAATTATAATTTTGGAAAATATCTATGTACAAACTAATCTACACAACCATGCAAAAAGATATATCGAAACGTAAACCCTAGGTGATCAACGTACAAAACACTATTACAATATGCCTGCCAGTTATACTATAACTATATGTATTATGCAACCTTATTAGGTCAC]




>consensus_5857#0
TTGTACAATAGTTTATCTCGCGTAATGAACTACATGTCCTACTCTCGTAATAATACGAGA
GGAGCAAATGTTCACGGTAGGAATGTTGATACATTATTTGAGAATATTTGACAAAAAAGA
CTGACAAAAACAGTACTGTTAGCGATTGTTTGGAGAGAAAAAAACAGCTACAAACACATA
TTCCTTGCCGGATCGGACAAAGGTTGGTACGGAGTACAGTATATGGCAACGGTAATTGTC
AACAGTATTGAAGACGCGCGGTTGTTTTCAATAAACCATTCCCGGTAAGTTGTATGCCCC
TTCAGAAGTGGTTTTGGAAGGAATAGGTTTACTACTGTATAGCAGTGTACTATCTGGTCG
TTGGATGATTTATTCTATTGTTAATTATTTTTGGAGAATGCTATAGAACGATATCCCGTT
CGGACAAGATAATACCTCTGAGGTATCACCTGATACCTGGTAGGTATCCGCTGGTACCCT
GTTCGGTCGAAATGATACGTCTAAGGTATCAGCTGATACCTGATAGGTATCGACTGGTAC
CTAGGTATTAAGCAATACCTATCATTCCTCTATTATTTTCTATGGATCAGTATTAAAGAA
CCGACATAATTAAATATAGAGTAGTCTAACTTAAACATAATTATAATTTTGGAAAATATC
TATGTACAAACTAATCTACACAACCATGCAAAAAGATATATCGAAACGTAAACCCTAGGT
GATCAACGTACAAAACACTATTACAATATGCCTGCCAGTTATACTATAACTATATGTATT
ATGCAACCTTATTAGGTCAC

consensusID : consensus_5857#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence

                              [AGATATCATTTTGTTCGAACAAGATACCATCGTGTAGCATTTCTCTATTATTCTCTATGGATCAGTATTAAAGACCCGACATAATTAAATATAGAGTAGTCTAACTTAAACATAATTATAATTTTGGAAAATATCTATGTACAAACTAATGTACACAACCATGCAAAAAGATATATCGAAACGTAAACCCTAGGTGATCAACGTACAAAACACTATTACAATATGCCTGCCAGTTATACTATAACTATATGTATTATGCAACCTTATTAGGTCACCGATACTTTTAAGTGAGTGATAAAATACCAAAACTGTTAGCTTATACTAGGGGTAGACGCCATGTTTTGTTATGGTAGCAAAATGCGAACGTCACGTCCAAAATAGCCTATCAGTAATTTATAGCAAGTATCTAATTAATGGCTAAAATAAATAGACAATGTGATTTTACCTAGAAATATTATTTATTGTTACTAATAACTATATATGGATCAATCTTATAGATTAACATAGATAAAAATATATCGCAGGGGACGATAGATTGGGCAACAACCACACCGAGGAGAGATTA]

[-] EMBL CB631708             [AGATATCATTTTGTTCGAACAAGATACCATCGTGTAGCATTTCTCTATTATTCTCTATGGATCAGTATTAAAGACCCGACATAATTAAATATAGAGTAGTCTAACTTAAACATAATTATAATTTTGGAAAATATCTATGTACAAACTAATGTACACAACCATGCAAAAAGATATATCGAAACGTAAACCCTAGGTGATCAACGTACAAAACACTATTACAATATGCCTGCCAGTTATACTATAACTATATGTATTATGCAACCTTATTAGGTCACCGATACTTTTAAGTGAGTGATAAAATACCAAAACTGTTAGCTTATACTAGGGGTAGACGCCATGTTTTGTTATGGTAGCAAAATGCGAACGTCACGTCCAAAATAGCCTATCAGTAATTTATAGCAAGTATCTAATTAATGGCTAAAATAAATAGACAATGTGATTTTACCTAGAAATATTATTTATTGTTACTAATAACTATATATGGATCAATCTTATAGATTAACATAGATAAAAATATATCGCAGGGGACGATAGATTGGGCAACAACCACACCGAGGAGAGATTA]




>consensus_5857#1
AGATATCATTTTGTTCGAACAAGATACCATCGTGTAGCATTTCTCTATTATTCTCTATGG
ATCAGTATTAAAGACCCGACATAATTAAATATAGAGTAGTCTAACTTAAACATAATTATA
ATTTTGGAAAATATCTATGTACAAACTAATGTACACAACCATGCAAAAAGATATATCGAA
ACGTAAACCCTAGGTGATCAACGTACAAAACACTATTACAATATGCCTGCCAGTTATACT
ATAACTATATGTATTATGCAACCTTATTAGGTCACCGATACTTTTAAGTGAGTGATAAAA
TACCAAAACTGTTAGCTTATACTAGGGGTAGACGCCATGTTTTGTTATGGTAGCAAAATG
CGAACGTCACGTCCAAAATAGCCTATCAGTAATTTATAGCAAGTATCTAATTAATGGCTA
AAATAAATAGACAATGTGATTTTACCTAGAAATATTATTTATTGTTACTAATAACTATAT
ATGGATCAATCTTATAGATTAACATAGATAAAAATATATCGCAGGGGACGATAGATTGGG
CAACAACCACACCGAGGAGAGATTA

consensusID : consensus_5857#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 200
fasta sequence

                              [TTTGTACATAGATATTTTCCAAAATCATAATTAAATATAGAGTAGTCTAACTTAAACATAATTATAATTTTGGAAAATATCTATGTACAAACTAATCTACACAACCATGCAAANAGNTATATCGAAACGTAAACCCTAGGTGATCANCGTNCANAACACTATTACANTATGNCTGCCAGTTATACTATNNCTATNTGTAT]

[+] EMBL OSR15532B            [TTTGTACATAGATATTTTCCAAAATCATAATTAAATATAGAGTAGTCTAACTTAAACATAATTATAATTTTGGAAAATATCTATGTACAAACTAATCTACACAACCATGCAAANAGNTATATCGAAACGTAAACCCTAGGTGATCANCGTNCANAACACTATTACANTATGNCTGCCAGTTATACTATNNCTATNTGTAT]




>consensus_5857#2
TTTGTACATAGATATTTTCCAAAATCATAATTAAATATAGAGTAGTCTAACTTAAACATA
ATTATAATTTTGGAAAATATCTATGTACAAACTAATCTACACAACCATGCAAANAGNTAT
ATCGAAACGTAAACCCTAGGTGATCANCGTNCANAACACTATTACANTATGNCTGCCAGT
TATACTATNNCTATNTGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5857#0      TTGTACAATAGTTTATCTCGCGTAATGAACTACATGTCCTACTCTCGTAATAATACGAGA 60
consensus_5857#2      ------------------------------------------------------------
consensus_5857#1      ------------------------------------------------------------
                                                                                  

consensus_5857#0      GGAGCAAATGTTCACGGTAGGAATGTTGATACATTATTTGAGAATATTTGACAAAAAAGA 120
consensus_5857#2      ------------------------------------------------------------
consensus_5857#1      ------------------------------------------------------------
                                                                                  

consensus_5857#0      CTGACAAAAACAGTACTGTTAGCGATTGTTTGGAGAGAAAAAAACAGCTACAAACACATA 180
consensus_5857#2      ------------------------------------------------------------
consensus_5857#1      -------------------------------------------------------AGATA 5
                                                                                  

consensus_5857#0      TTCCTTGCCGGATCGGACAAAGGTTGGTACGGAGTACAGTATATGGCAACGGTAATTGTC 240
consensus_5857#2      ------------------------------------------------------------
consensus_5857#1      TCATTTT---GTTCGAACAA--GATACCATCGTGTAGCATTTCTC-TATTATTCTCTATG 59
                                                                                  

consensus_5857#0      AA-CAGTATTGAAGACGCGCGGTTGTTTTCAATAAACCATTCCCGGTAAGTTGTATGCCC 299
consensus_5857#2      ------------------------------------------------------------
consensus_5857#1      GATCAGTATTAAAGACCCGACATAATTAAATATAGAGTAGTC----TAACTTAAACATAA 115
                                                                                  

consensus_5857#0      CTTCAGAAGTGGTTTTGGAAGGAATAGGTTTAC----TACTGTATAGCAGTGTACTATCT 355
consensus_5857#2      ------------------------------------------------------------
consensus_5857#1      TT------ATAATTTTGGAAAATATCTATGTACAAACTAATGTACACAACCATGCAAAAA 169
                                                                                  

consensus_5857#0      GGTCGTTGGATGATTTATTCTATTGTTAATTATTTTTGGAGAATGCTATAGAACGATATC 415
consensus_5857#2      ------------------------------------------------------------
consensus_5857#1      GATATATCGA-AACGTAAACCCTAGGTGATCAACGT-ACAAAACACTAT--TACAATATG 225
                                                                                  

consensus_5857#0      CCGTTCGGACAAGATAATACCTCTGAGGTATCACCTGATACCTGGTAGGTATCCGCTGGT 475
consensus_5857#2      ------------------------------------------------------------
consensus_5857#1      CCTGCCAGTTATACTA-TAACTAT-ATGTATTATGCAAC-CTTATTAGGT---CACCGAT 279
                                                                                  

consensus_5857#0      ACCCTGTTCGGTCGAAATGATACGTCTAAGGTATCAGCTGATACCTGA--TAGGTATCGA 533
consensus_5857#2      ------------------------------------------------------------
consensus_5857#1      ACTTT-TAAGTGAGTGATAAAATACCAAAACTGTTAGCTTATACTAGGGGTAGACGCCAT 338
                                                                                  

consensus_5857#0      CTGGTACCTAGGTATTAAGCAATACCTATCATTCCT--------CTATTATTTTCTATGG 585
consensus_5857#2      -----------------------------------------------------TTTGTAC 7
consensus_5857#1      GTTTTGTTATGGTAGCAAAATGCGAACGTCACGTCCAAAATAGCCTATCAGTAATTTATA 398
                                                                             *    

consensus_5857#0      ATCAGTATTAAAGAACCGACATAATTAAATATAGA--GTAGTCTAACTTAAACATAATTA 643
consensus_5857#2      ATAGATATTTTCCAAA-ATCATAATTAAATATAGA--GTAGTCTAACTTAAACATAATTA 64
consensus_5857#1      GCAAGTATCTAATTAATGGCTAAAATAAATAGACAATGTGATTTTACCTAGAAATATTAT 458
                           ***      *    *  ** ****** * *  **  * * ** ** * *** *  

consensus_5857#0      TAATTTTGGAAAATATCTATGTACAAACTAATCT---ACACAACCATGCAAAAAGATATA 700
consensus_5857#2      TAATTTTGGAAAATATCTATGTACAAACTAATCT---ACACAACCATGCAAANAGNTATA 121
consensus_5857#1      TTATTGTTACTAATAACTATATATGGATCAATCTTATAGATTAACATAGATAAAAATATA 518
                      * *** *    **** **** **   *  *****   * *  * ***  * * *  ****

consensus_5857#0      TCGAAACGTAAACCCTAGGT-GATCAACGTACAAAACACTATTACAATATGCCTGCCAGT 759
consensus_5857#2      TCGAAACGTAAACCCTAGGT-GATCANCGTNCANAACACTATTACANTATGNCTGCCAGT 180
consensus_5857#1      TCGCAGGG--GACGATAGATTGGGCAACAACCACACCGAGGAGAGATTA----------- 565
                      *** *  *   **  *** * *  ** *   ** * *      * * **           

consensus_5857#0      TATACTATAACTATATGTATTATGCAACCTTATTAGGTCAC 800
consensus_5857#2      TATACTATNNCTATNTGTAT--------------------- 200
consensus_5857#1      -----------------------------------------