These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5859#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2365 fasta sequence [GCTCGTGATCCCATCAGATCAGCAAGCAGTCGCGAAATGGTGCCGATGGCTAAGGCTCTCGCGGTCGTGTCCGCTTTCTGCCTTCTTGTGGCGCCGGCCGCCGCGGCGCGTAGCCTCGTCGACGTCATCGGCGGGGCGTTCGGTGGCCGGAAGGACTACTACACGCCCGGTCCTACTGGCCAGCACCACTCTTCTAGTCCCAGTCATTCGCACAAGGCTCCGCCCTGCGCGCCGACGCCGCCACAGGGAGGTGGTGGAGGCTACAACCCACCCTCGCCGTCCATTGGAACCTCTCCGACAACGCCGGGAGGAGGTGGAGGCTACACGCCGACGCCGAGCGACACGCCACCCTCTCCGTCCAGTGACACCTCGCCGAGCACTCCGGGTGGCGGCTGCTCGTCCTCACCCACGCCGTGCGACGCACCGCCCTCACCGTCCAGTGACACGTCCCCGACAACGCCGGGGGGAGGTGGAGGCTACTCGCCGACACCGAGTGACACTCCGCCCTCGCCGTCCAGTGACACCTCTCCGACAACGCCGGGTGGAGGTGGAGGCTACACGCCGACGCCGAGCGACGCGCCGCCCTCGCCTTCTAGTGACACCTCTCCGACAACGCCAGGTGGAGGTGGAGGCTACACGCCGACGCCGAGCGACGCGCCGCCTTCGCCGTCCAGTGACACCTCTCCGACAACGCCGGGTGGAGGTGGAGGCTACACGCCGACGCCGAGCGACACGCCGCCCTCGCCGTCCAGTGGCAGCTCCCCGACAACGCCGGGTGGAGGTGGAGGCTACACGCCGACACCGAGCGACACGCCGCCCTCGCCGTCCAGTGGCAGCTCTCGCACTACACCGGGTGGATGCTCCACTCCCACGCCGTGCGGCACGCCGCCCGCGCCGTCGAGTGGCACCTCTCCGACCACACCGGGTGGAAGCTACTACCCGCCCACGCCGTCCATTGGCGACGTGCCACCCTCGCCGTCCAGCGACACCTCTCCGACCACACCGGGCGGAGGCTCCCCGTCCACGCCATGCGACACGCCGCCCTCGCCGTCCAGTGGCACGTCCCCGACCACGCCAGGTGGAGGCTACTACCCGCCCACGCCATCCGTCGGCGACGTGCCTCCCTCGCCGGCCAGTGGCACCTCCCCATCCACGCCAGGTAGTGGAGGCTACTCTCCGTCCACGCCATGCAGTGCGCCGCCGTCGCCTTCAAGTGGCACCTCCCCAACCACGCCGGGTGGAGGCTATTCTCCTTCCACGCCGTGCAATGCGCCGCCCTCCCCTTCAAGTGACACCTCCCCGACAACACCTGGTGGCGGCAACTACCCGCCCGCGCCCACCATTGGCAACGTCCCGCCATCGCCATCCAGCGGCACCTCCCCGAGCACACCGGGTGGTGGCTGCTCATCCTCACCCACGCCATGCGACGCGCCGCCCTCGCCATCCAGTGACACTTCCCCGACAACACCGGGTGGAGGGTACTACCCGCCCACGCCGTCCATCGGCACCTCGCCATCCACACCGGGCACCGGCGGAGGCTACTACCCTCCCTCCCCTTCCACCGGCGGCTACACGCCGACTCCGGACGTTCCGATCAGCACCCCGTCGAGCCCCTACTCCCCGCTGGTGCCCACGCCGCCGTCGAGCACCACCCCGATGCCTTCGACCCCAACACGGCACCCTTCCCGTGCTCATACTGGCTGTCGCACCCGGGCGTGATATGGGGCCTGTTCGGGTTCTGGTGCCCGATGGCGCGGCTGTTCGGGCCGACCGCCGCGGCGCCGTTCGGACACGACCTGACCGTGCCGGAGGCGCTGGCGAACACGCGCGCCGACGGCGTGGGCGAGCTCTACCGCGAGGGCACGGCGTCGCTTCTCAACTCCATGGTGAACAGCAGGTTCCCC-TTCA-CCACGCAGCAGGTGAAGGACGCGTTCAGCGCCGCGCTCAGCTCAGGAGGCGACCACGCCGCCGCGGCTCAGGCGCAGCTCTTCAAGAAGGCCAACGAAGGCCACGTCATGCGTTAGGCTAGGCGGCCTCTCGATCCTCTGTACTTGAACGTACTCGCCACGTGAGGCGGATTCGATGCGATGTACACGCGAGCATGCGTGCAGGTTCATGTCGGGGTGGGGTTTGGAGTAATCCGGCGTGTTTGCAACTTTGCATTATGTTTGATCTAGAGCGGATGGCCTCTGGAATAACTATAGGAGAGTTAAGTACGTATGTTTTGTTATCCTTTTAGAGTCCATGGCCGCACGGAATGACTACAGGAGTGTTCTCTGTGGCCTTTTAATTCAGTATGTACTTGTGGCGTTAAGCATCAGACGTGTTCTAGTATTTCTAGTTCTATGAAACTACTGGCAGCGGC] [+] EMBL AK100192 [GCTCGTGATCCCATCAGATCAGCAAGCAGTCGCGAAATGGTGCCGATGGCTAAGGCTCTCGCGGTCGTGTCCGCTTTCTGCCTTCTTGTGGCGCCGGCCGCCGCGGCGCGTAGCCTCGTCGACGTCATCGGCGGGGCGTTCGGTGGCCGGAAGGACTACTACACGCCCGGTCCTACTGGCCAGCACCACTCTTCTAGTCCCAGTCATTCGCACAAGGCTCCGCCCTGCGCGCCGACGCCGCCACAGGGAGGTGGTGGAGGCTACAACCCACCCTCGCCGTCCATTGGAACCTCTCCGACAACGCCGGGAGGAGGTGGAGGCTACACGCCGACGCCGAGCGACACGCCACCCTCTCCGTCCAGTGACACCTCGCCGAGCACTCCGGGTGGCGGCTGCTCGTCCTCACCCACGCCGTGCGACGCACCGCCCTCACCGTCCAGTGACACGTCCCCGACAACGCCGGGGGGAGGTGGAGGCTACTCGCCGACACCGAGTGACACTCCGCCCTCGCCGTCCAGTGACACCTCTCCGACAACGCCGGGTGGAGGTGGAGGCTACACGCCGACGCCGAGCGACGCGCCGCCCTCGCCTTCTAGTGACACCTCTCCGACAACGCCAGGTGGAGGTGGAGGCTACACGCCGACGCCGAGCGACGCGCCGCCTTCGCCGTCCAGTGACACCTCTCCGACAACGCCGGGTGGAGGTGGAGGCTACACGCCGACGCCGAGCGACACGCCGCCCTCGCCGTCCAGTGGCAGCTCCCCGACAACGCCGGGTGGAGGTGGAGGCTACACGCCGACACCGAGCGACACGCCGCCCTCGCCGTCCAGTGGCAGCTCTCGCACTACACCGGGTGGATGCTCCACTCCCACGCCGTGCGGCACGCCGCCCGCGCCGTCGAGTGGCACCTCTCCGACCACACCGGGTGGAAGCTACTACCCGCCCACGCCGTCCATTGGCGACGTGCCACCCTCGCCGTCCAGCGACACCTCTCCGACCACACCGGGCGGAGGCTCCCCGTCCACGCCATGCGACACGCCGCCCTCGCCGTCCAGTGGCACGTCCCCGACCACGCCAGGTGGAGGCTACTACCCGCCCACGCCATCCGTCGGCGACGTGCCTCCCTCGCCGGCCAGTGGCACCTCCCCATCCACGCCAGGTAGTGGAGGCTACTCTCCGTCCACGCCATGCAGTGCGCCGCCGTCGCCTTCAAGTGGCACCTCCCCAACCACGCCGGGTGGAGGCTATTCTCCTTCCACGCCGTGCAATGCGCCGCCCTCCCCTTCAAGTGACACCTCCCCGACAACACCTGGTGGCGGCAACTACCCGCCCGCGCCCACCATTGGCAACGTCCCGCCATCGCCATCCAGCGGCACCTCCCCGAGCACACCGGGTGGTGGCTGCTCATCCTCACCCACGCCATGCGACGCGCCGCCCTCGCCATCCAGTGACACTTCCCCGACAACACCGGGTGGAGGGTACTACCCGCCCACGCCGTCCATCGGCACCTCGCCATCCACACCGGGCACCGGCGGAGGCTACTACCCTCCCTCCCCTTCCACCGGCGGCTACACGCCGACTCCGGACGTTCCGATCAGCACCCCGTCGAGCCCCTACTCCCCGCTGGTGCCCACGCCGCCGTCGAGCACCACCCCGATGCCTTCGACCCCAACACGGCACCCTTCCCGTGCTCATACTGGCTGTCGCACCCGGGCGTGATATGGGGCCTGTTCGGGTTCTGGTGCCCGATGGCGCGGCTGTTCGGGCCGACCGCCGCGGCGCCGTTCGGACACGACCTGACCGTGCCGGAGGCGCTGGCGAACACGCGCGCCGACGGCGTGGGCGAGCTCTACCGCGAGGGCACGGCGTCGCTTCTCAACTCCATGGTGAACAGCAGGTTCCCC TTCA CCACGCAGCAGGTGAAGGACGCGTTCAGCGCCGCGCTCAGCTCAGGAGGCGACCACGCCGCCGCGGCTCAGGCGCAGCTCTTCAAGAAGGCCAACGAAGGCCACGTCATGCGTTAGGCTAGGCGGCCTCTCGATCCTCTGTACTTGAACGTACTCGCCACGTGAGGCGGATTCGATGCGATGTACACGCGAGCATGCGTGCAGGTTCATGTCGGGGTGGGGTTTGGAGTAATCCGGCGTGTTTGCAACTTTGCATTATGTTTGATCTAGAGCGGATGGCCTCTGGAATAACTATAGGAGAGTTAAGTACGTATGTTTTGTTATCCTTTTAGAGTCCATGGCCGCACGGAATGACTACAGGAGTGTTCTCTGTGGCCTTTTAATTCAGTATGTACTTGTGGCGTTAAGCATCAGACGTGTTCTAGTATTTCTAGTTCTATGA ] [-] EMBL AU225590 [ ccgctcagGGTTCCCCTTTCACCCACGCAGCAGGTGCAAGACGCGTTCAGCGCCGCGCTCAGCTCAGGAGGCGACCACGCCGCCGCGGCTCAGGCGCAGCTCTTCAAGAAGGCCAACGAAGGCCACGTCATGCGTTAGGCTAGGCGGCCTCTCGATCCTCTGTACTTGAACGTACTCGCCACGTGAGGCGGATTCGATGCGATGTACACGCGAGCATGCGTGCAGGTTCATGTCGGGGTGGGGTTTGGAGTAATCCGGCGTGTTTGCAACTTTGCATTATGTTTGATCTAGAGCGGATGGCCTCTGGAATAACTATAGGAGAGTTAAGTACGTATGTTTTGTTATCCTTTTAGAGTCCATGGCCGCACGGAATGACTACAGGAGTGTTCTCTGTGGCCTTTTAATTCAGTATGTACTTGTGGCGTTAAGCATCAGACGTGTTCTAGTATTTCTAGTTCTATGTAACTACTGGCAGCGGC] consensusID : consensus_5859#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence [GAGACAAGGGGTAGGGAGACAGAGGACGAGACAAGGGGGGAGTAATCCGGCGTGTTTGCAACTTTGCATTATGTTTGATCTAGAGCGGATGGCCTCTGGAATAACTATAGGAGAGTTAAGTACGTATGTTTTGTTATCCTTTTAGAGCGCATGGTCGCACGGAATGACTACAGGAGTGTTCTCTGTGGTCTTTTAATTCAGTATGTACTTGTGGCGTTAAGCATCAGACGTGTTCTAGTATTTCTAGTTCTATGAAAAAAAAAATAAAAAAAAAAAAAAA] [-] EMBL CA761928 [GAGACAAGGGGTAGGGAGACAGAGGACGAGACAAGGGGGGAGTAATCCGGCGTGTTTGCAACTTTGCATTATGTTTGATCTAGAGCGGATGGCCTCTGGAATAACTATAGGAGAGTTAAGTACGTATGTTTTGTTATCCTTTTAGAGCGCATGGTCGCACGGAATGACTACAGGAGTGTTCTCTGTGGTCTTTTAATTCAGTATGTACTTGTGGCGTTAAGCATCAGACGTGTTCTAGTATTTCTAGTTCTATGAAAAAAAAAATAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5859#0 GCTCGTGATCCCATCAGATCAGCAAGCAGTCGCGAAATGGTGCCGATGGCTAAGGCTCTC 60 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 GCGGTCGTGTCCGCTTTCTGCCTTCTTGTGGCGCCGGCCGCCGCGGCGCGTAGCCTCGTC 120 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 GACGTCATCGGCGGGGCGTTCGGTGGCCGGAAGGACTACTACACGCCCGGTCCTACTGGC 180 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 CAGCACCACTCTTCTAGTCCCAGTCATTCGCACAAGGCTCCGCCCTGCGCGCCGACGCCG 240 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 CCACAGGGAGGTGGTGGAGGCTACAACCCACCCTCGCCGTCCATTGGAACCTCTCCGACA 300 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 ACGCCGGGAGGAGGTGGAGGCTACACGCCGACGCCGAGCGACACGCCACCCTCTCCGTCC 360 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 AGTGACACCTCGCCGAGCACTCCGGGTGGCGGCTGCTCGTCCTCACCCACGCCGTGCGAC 420 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 GCACCGCCCTCACCGTCCAGTGACACGTCCCCGACAACGCCGGGGGGAGGTGGAGGCTAC 480 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 TCGCCGACACCGAGTGACACTCCGCCCTCGCCGTCCAGTGACACCTCTCCGACAACGCCG 540 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 GGTGGAGGTGGAGGCTACACGCCGACGCCGAGCGACGCGCCGCCCTCGCCTTCTAGTGAC 600 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 ACCTCTCCGACAACGCCAGGTGGAGGTGGAGGCTACACGCCGACGCCGAGCGACGCGCCG 660 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 CCTTCGCCGTCCAGTGACACCTCTCCGACAACGCCGGGTGGAGGTGGAGGCTACACGCCG 720 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 ACGCCGAGCGACACGCCGCCCTCGCCGTCCAGTGGCAGCTCCCCGACAACGCCGGGTGGA 780 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 GGTGGAGGCTACACGCCGACACCGAGCGACACGCCGCCCTCGCCGTCCAGTGGCAGCTCT 840 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 CGCACTACACCGGGTGGATGCTCCACTCCCACGCCGTGCGGCACGCCGCCCGCGCCGTCG 900 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 AGTGGCACCTCTCCGACCACACCGGGTGGAAGCTACTACCCGCCCACGCCGTCCATTGGC 960 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 GACGTGCCACCCTCGCCGTCCAGCGACACCTCTCCGACCACACCGGGCGGAGGCTCCCCG 1020 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 TCCACGCCATGCGACACGCCGCCCTCGCCGTCCAGTGGCACGTCCCCGACCACGCCAGGT 1080 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 GGAGGCTACTACCCGCCCACGCCATCCGTCGGCGACGTGCCTCCCTCGCCGGCCAGTGGC 1140 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 ACCTCCCCATCCACGCCAGGTAGTGGAGGCTACTCTCCGTCCACGCCATGCAGTGCGCCG 1200 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 CCGTCGCCTTCAAGTGGCACCTCCCCAACCACGCCGGGTGGAGGCTATTCTCCTTCCACG 1260 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 CCGTGCAATGCGCCGCCCTCCCCTTCAAGTGACACCTCCCCGACAACACCTGGTGGCGGC 1320 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 AACTACCCGCCCGCGCCCACCATTGGCAACGTCCCGCCATCGCCATCCAGCGGCACCTCC 1380 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 CCGAGCACACCGGGTGGTGGCTGCTCATCCTCACCCACGCCATGCGACGCGCCGCCCTCG 1440 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 CCATCCAGTGACACTTCCCCGACAACACCGGGTGGAGGGTACTACCCGCCCACGCCGTCC 1500 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 ATCGGCACCTCGCCATCCACACCGGGCACCGGCGGAGGCTACTACCCTCCCTCCCCTTCC 1560 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 ACCGGCGGCTACACGCCGACTCCGGACGTTCCGATCAGCACCCCGTCGAGCCCCTACTCC 1620 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 CCGCTGGTGCCCACGCCGCCGTCGAGCACCACCCCGATGCCTTCGACCCCAACACGGCAC 1680 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 CCTTCCCGTGCTCATACTGGCTGTCGCACCCGGGCGTGATATGGGGCCTGTTCGGGTTCT 1740 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 GGTGCCCGATGGCGCGGCTGTTCGGGCCGACCGCCGCGGCGCCGTTCGGACACGACCTGA 1800 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 CCGTGCCGGAGGCGCTGGCGAACACGCGCGCCGACGGCGTGGGCGAGCTCTACCGCGAGG 1860 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 GCACGGCGTCGCTTCTCAACTCCATGGTGAACAGCAGGTTCCCCTTCACCACGCAGCAGG 1920 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 TGAAGGACGCGTTCAGCGCCGCGCTCAGCTCAGGAGGCGACCACGCCGCCGCGGCTCAGG 1980 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 CGCAGCTCTTCAAGAAGGCCAACGAAGGCCACGTCATGCGTTAGGCTAGGCGGCCTCTCG 2040 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 ATCCTCTGTACTTGAACGTACTCGCCACGTGAGGCGGATTCGATGCGATGTACACGCGAG 2100 consensus_5859#1 ----------------------------------------------------GAGACAAG 8 * * ** consensus_5859#0 CATGCGTGCAGGTTCATGTCGGGGTGGGGTTTGGAGTAATCCGGCGTGTTTGCAACTTTG 2160 consensus_5859#1 -GGGTAGGGAGACAGAGGACGAGACAAGGGG-GGAGTAATCCGGCGTGTTTGCAACTTTG 66 * * ** * * ** * ** **************************** consensus_5859#0 CATTATGTTTGATCTAGAGCGGATGGCCTCTGGAATAACTATAGGAGAGTTAAGTACGTA 2220 consensus_5859#1 CATTATGTTTGATCTAGAGCGGATGGCCTCTGGAATAACTATAGGAGAGTTAAGTACGTA 126 ************************************************************ consensus_5859#0 TGTTTTGTTATCCTTTTAGAGTCCATGGCCGCACGGAATGACTACAGGAGTGTTCTCTGT 2280 consensus_5859#1 TGTTTTGTTATCCTTTTAGAGCGCATGGTCGCACGGAATGACTACAGGAGTGTTCTCTGT 186 ********************* ***** ******************************* consensus_5859#0 GGCCTTTTAATTCAGTATGTACTTGTGGCGTTAAGCATCAGACGTGTTCTAGTATTTCTA 2340 consensus_5859#1 GGTCTTTTAATTCAGTATGTACTTGTGGCGTTAAGCATCAGACGTGTTCTAGTATTTCTA 246 ** ********************************************************* consensus_5859#0 GTTCTATGAAACTACTGGCAGCGGC--------- 2365 consensus_5859#1 GTTCTATGAAAAAAAAAATAAAAAAAAAAAAAAA 280 *********** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||